jgi.p|Nanoce1779_2|587456, mRNA_4673 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587456
Unique NamemRNA_4673
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2105
Alignment locationscaffold_9:348849..350953 -

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Properties
Property NameValue
TranscriptId587542
TrackFilteredModels2
ProteinId587456
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:348849..350953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587456gene_4673Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587456mRNA_4673-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4673CDS_4673Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4673 ID=mRNA_4673|Name=jgi.p|Nanoce1779_2|587456|organism=Nannochloropsis oceanica|type=mRNA|length=2105bp
CAGACGAAACATGAGGCTGAGGTTTCTCACAACTGGTGCATTAAGCTTGG
CGTGGCTCGGCATAGCCATGGGAATCGGCACCATGAGCCCGGAGGATGCC
CGGCTGGACCGCAAGCGCCTGGAAAAGATTACGCAAGAACTGCAGACGCA
AGTGAGCCGCAATCAGTTGCCGGGCGCGGCCTTCCAAGTCTATCGGGCTG
GTAAGCTCGTATTTCAAGATGCCGTCGGGTTTCAGGACCGGGAGCTGATG
CGGCCCATGGGCATGGGCACCATTGTGCGCCTAATGTCCCAGACGAAGCC
CTTAACGGCGGCCGGCGTCATGATTCTGATCGAGCGAGGCTTGCTTAAGT
TGGACGACCCGCTCTGGAAGTACCATCCCAGGTTTCGTAACATGAGAGTT
CTCAAGTACGATGGGGCCACGGAAACCGTCCCTGCCGACCGTGACATCAC
CATCAACGACCTCCTCCTGCACACGGCCGGCTTCGGCTACTCCGGAGGCT
TCAACGACCCTACTGGGGATGGGCCTTGGCAGACCCTGGAGCTGCCCTTT
GAATCCCTCGAATTCTTTATGGACGACCTGGCTGACAAGCCCTTATTCTG
GCAGCCTGGCACAACTTGGCGATACTCCTGGAGTTATGACGTGCTGGGGT
ACGTGATCAAGCGCATCACCAATCAGAGCCCCGATGACTGGCTTCGCCAG
AATTTGTTCGTACCCCTGCAGATGTACGACACGGACTTCTATGTCCCCAT
GTCCAAGATTGATCGCTTTGCCGTCGCCTACACTATGACGCGCGGGAATG
TCCTCATTCCATTTATCCGCCCTCGCATGGACCCTCTTCAGGCCTTCAGT
CCCCCGACCTTCCTATCTTGTGGCTCGGGCATCGTCTCCACGCTCCACGA
CTACAGCCGCTTCGCACTCATGTTGCTCAATGGCGGGGAGATCGACGGGA
TCCGTATTTTGCAATCTTCAACGGTAGATATGATGTGGCGCAATAACCTG
AACCTAGCCTTGCTGCCCATGGACCTCAATGGATGGAAGTCCGATATGAA
CACAGGCTGGGGTTATGGTTTCACTGTGTCTGCCCCTGGCCCCTTGCCGG
GCGTCGACTGGAGCAAGCACACGGGTGCAAACAAAACTGGTTCTATTGGA
TGGGGTGGCGGGATGATGACCAATTGGATTGCTTCCGCTGATAATGACTT
GCTGGTAGTTTTTGCCACGCAGCGTTTAGCTACACCTATTCCCAACACAT
TCCAGGAGATCGTGGTGGAGGGTGTGATGAAGTCCATCAAGGGCAACTCT
CCCCGCAAGCTCCCCGGCCCCGAGGGTCCTGCTGTGGACTATGAGGTCGA
CGATGGGACCAACCATGCAGGGGGGAGCGGCGGTAACAACCGCGGGTTTG
GACTAGGTCGGGCTGCTAGGAACCCTCTGCCCGGGTTGTGGGGTAATCAG
TGGGTGCAGACAGACCAGATGGAGCTGTTGGAGTCCTTGACTCAGGAGCA
GGCCGAGAGATCTGAGACTTATCAGGCAGTCGAAAAGGATGTGGTGGGGA
CCAAGACGACGACTCGTTTCCGCAACAATGCGTAAATGTATAACAAGTAT
AAAATATAGATTTGACAGGAGAACTGGAACAGGGATTAAGATTTTCGTCT
GGGACTCTCCGTACCAGTTCATCTCAGTTCGCTCACTCATAAGTATAATC
GGAATCGTCTTATCATCACCAGCAATCAACACACGAACCATCGATATTGT
AGTTTTAGTGTAGCACGTGCACTCACAAGTGTCTGTTTAGAGGAATATGT
ATGTAGACTTCTCTTTGTGTCGCACATGTCATTTGTTTTCCACCACTCCG
AAGGGATAGCGTGATGAAAAGTTGTAAATGACTTTTGAACTTGGGTCAAG
ACGAAAAGGGAAGATCAAGCAGGATGGCATTCGAGGGAGATAGCAGAGAG
GAGGAAGGCAGGGGGGAGTCACGAACAGGGCCAGATTGCATTTTTGTTGG
AGGACAAACATAAAGGGACTTTGTATAACCATGGAAAGATACACATTCAA
GAAGAAAAGGAATATAAAGTGGTCCTTGCAACTAATTTACATGCTTGTGG
TAGGC
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protein sequence of jgi.p|Nanoce1779_2|587456

>mRNA_4673-protein ID=mRNA_4673-protein|Name=jgi.p|Nanoce1779_2|587456|organism=Nannochloropsis oceanica|type=polypeptide|length=525bp
MRLRFLTTGALSLAWLGIAMGIGTMSPEDARLDRKRLEKITQELQTQVSR
NQLPGAAFQVYRAGKLVFQDAVGFQDRELMRPMGMGTIVRLMSQTKPLTA
AGVMILIERGLLKLDDPLWKYHPRFRNMRVLKYDGATETVPADRDITIND
LLLHTAGFGYSGGFNDPTGDGPWQTLELPFESLEFFMDDLADKPLFWQPG
TTWRYSWSYDVLGYVIKRITNQSPDDWLRQNLFVPLQMYDTDFYVPMSKI
DRFAVAYTMTRGNVLIPFIRPRMDPLQAFSPPTFLSCGSGIVSTLHDYSR
FALMLLNGGEIDGIRILQSSTVDMMWRNNLNLALLPMDLNGWKSDMNTGW
GYGFTVSAPGPLPGVDWSKHTGANKTGSIGWGGGMMTNWIASADNDLLVV
FATQRLATPIPNTFQEIVVEGVMKSIKGNSPRKLPGPEGPAVDYEVDDGT
NHAGGSGGNNRGFGLGRAARNPLPGLWGNQWVQTDQMELLESLTQEQAER
SETYQAVEKDVVGTKTTTRFRNNA*
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mRNA from alignment at scaffold_9:348849..350953-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4673 ID=mRNA_4673|Name=jgi.p|Nanoce1779_2|587456|organism=Nannochloropsis oceanica|type=mRNA|length=2105bp|location=Sequence derived from alignment at scaffold_9:348849..350953- (Nannochloropsis oceanica)
CAGACGAAACATGAGGCTGAGGTTTCTCACAACTGGTGCATTAAGCTTGG
CGTGGCTCGGCATAGCCATGGGAATCGGCACCATGAGCCCGGAGGATGCC
CGGCTGGACCGCAAGCGCCTGGAAAAGATTACGCAAGAACTGCAGACGCA
AGTGAGCCGCAATCAGTTGCCGGGCGCGGCCTTCCAAGTCTATCGGGCTG
GTAAGCTCGTATTTCAAGATGCCGTCGGGTTTCAGGACCGGGAGCTGATG
CGGCCCATGGGCATGGGCACCATTGTGCGCCTAATGTCCCAGACGAAGCC
CTTAACGGCGGCCGGCGTCATGATTCTGATCGAGCGAGGCTTGCTTAAGT
TGGACGACCCGCTCTGGAAGTACCATCCCAGGTTTCGTAACATGAGAGTT
CTCAAGTACGATGGGGCCACGGAAACCGTCCCTGCCGACCGTGACATCAC
CATCAACGACCTCCTCCTGCACACGGCCGGCTTCGGCTACTCCGGAGGCT
TCAACGACCCTACTGGGGATGGGCCTTGGCAGACCCTGGAGCTGCCCTTT
GAATCCCTCGAATTCTTTATGGACGACCTGGCTGACAAGCCCTTATTCTG
GCAGCCTGGCACAACTTGGCGATACTCCTGGAGTTATGACGTGCTGGGGT
ACGTGATCAAGCGCATCACCAATCAGAGCCCCGATGACTGGCTTCGCCAG
AATTTGTTCGTACCCCTGCAGATGTACGACACGGACTTCTATGTCCCCAT
GTCCAAGATTGATCGCTTTGCCGTCGCCTACACTATGACGCGCGGGAATG
TCCTCATTCCATTTATCCGCCCTCGCATGGACCCTCTTCAGGCCTTCAGT
CCCCCGACCTTCCTATCTTGTGGCTCGGGCATCGTCTCCACGCTCCACGA
CTACAGCCGCTTCGCACTCATGTTGCTCAATGGCGGGGAGATCGACGGGA
TCCGTATTTTGCAATCTTCAACGGTAGATATGATGTGGCGCAATAACCTG
AACCTAGCCTTGCTGCCCATGGACCTCAATGGATGGAAGTCCGATATGAA
CACAGGCTGGGGTTATGGTTTCACTGTGTCTGCCCCTGGCCCCTTGCCGG
GCGTCGACTGGAGCAAGCACACGGGTGCAAACAAAACTGGTTCTATTGGA
TGGGGTGGCGGGATGATGACCAATTGGATTGCTTCCGCTGATAATGACTT
GCTGGTAGTTTTTGCCACGCAGCGTTTAGCTACACCTATTCCCAACACAT
TCCAGGAGATCGTGGTGGAGGGTGTGATGAAGTCCATCAAGGGCAACTCT
CCCCGCAAGCTCCCCGGCCCCGAGGGTCCTGCTGTGGACTATGAGGTCGA
CGATGGGACCAACCATGCAGGGGGGAGCGGCGGTAACAACCGCGGGTTTG
GACTAGGTCGGGCTGCTAGGAACCCTCTGCCCGGGTTGTGGGGTAATCAG
TGGGTGCAGACAGACCAGATGGAGCTGTTGGAGTCCTTGACTCAGGAGCA
GGCCGAGAGATCTGAGACTTATCAGGCAGTCGAAAAGGATGTGGTGGGGA
CCAAGACGACGACTCGTTTCCGCAACAATGCGTAAATGTATAACAAGTAT
AAAATATAGATTTGACAGGAGAACTGGAACAGGGATTAAGATTTTCGTCT
GGGACTCTCCGTACCAGTTCATCTCAGTTCGCTCACTCATAAGTATAATC
GGAATCGTCTTATCATCACCAGCAATCAACACACGAACCATCGATATTGT
AGTTTTAGTGTAGCACGTGCACTCACAAGTGTCTGTTTAGAGGAATATGT
ATGTAGACTTCTCTTTGTGTCGCACATGTCATTTGTTTTCCACCACTCCG
AAGGGATAGCGTGATGAAAAGTTGTAAATGACTTTTGAACTTGGGTCAAG
ACGAAAAGGGAAGATCAAGCAGGATGGCATTCGAGGGAGATAGCAGAGAG
GAGGAAGGCAGGGGGGAGTCACGAACAGGGCCAGATTGCATTTTTGTTGG
AGGACAAACATAAAGGGACTTTGTATAACCATGGAAAGATACACATTCAA
GAAGAAAAGGAATATAAAGTGGTCCTTGCAACTAATTTACATGCTTGTGG
TAGGC
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Coding sequence (CDS) from alignment at scaffold_9:348849..350953-

>mRNA_4673 ID=mRNA_4673|Name=jgi.p|Nanoce1779_2|587456|organism=Nannochloropsis oceanica|type=CDS|length=1575bp|location=Sequence derived from alignment at scaffold_9:348849..350953- (Nannochloropsis oceanica)
ATGAGGCTGAGGTTTCTCACAACTGGTGCATTAAGCTTGGCGTGGCTCGG
CATAGCCATGGGAATCGGCACCATGAGCCCGGAGGATGCCCGGCTGGACC
GCAAGCGCCTGGAAAAGATTACGCAAGAACTGCAGACGCAAGTGAGCCGC
AATCAGTTGCCGGGCGCGGCCTTCCAAGTCTATCGGGCTGGTAAGCTCGT
ATTTCAAGATGCCGTCGGGTTTCAGGACCGGGAGCTGATGCGGCCCATGG
GCATGGGCACCATTGTGCGCCTAATGTCCCAGACGAAGCCCTTAACGGCG
GCCGGCGTCATGATTCTGATCGAGCGAGGCTTGCTTAAGTTGGACGACCC
GCTCTGGAAGTACCATCCCAGGTTTCGTAACATGAGAGTTCTCAAGTACG
ATGGGGCCACGGAAACCGTCCCTGCCGACCGTGACATCACCATCAACGAC
CTCCTCCTGCACACGGCCGGCTTCGGCTACTCCGGAGGCTTCAACGACCC
TACTGGGGATGGGCCTTGGCAGACCCTGGAGCTGCCCTTTGAATCCCTCG
AATTCTTTATGGACGACCTGGCTGACAAGCCCTTATTCTGGCAGCCTGGC
ACAACTTGGCGATACTCCTGGAGTTATGACGTGCTGGGGTACGTGATCAA
GCGCATCACCAATCAGAGCCCCGATGACTGGCTTCGCCAGAATTTGTTCG
TACCCCTGCAGATGTACGACACGGACTTCTATGTCCCCATGTCCAAGATT
GATCGCTTTGCCGTCGCCTACACTATGACGCGCGGGAATGTCCTCATTCC
ATTTATCCGCCCTCGCATGGACCCTCTTCAGGCCTTCAGTCCCCCGACCT
TCCTATCTTGTGGCTCGGGCATCGTCTCCACGCTCCACGACTACAGCCGC
TTCGCACTCATGTTGCTCAATGGCGGGGAGATCGACGGGATCCGTATTTT
GCAATCTTCAACGGTAGATATGATGTGGCGCAATAACCTGAACCTAGCCT
TGCTGCCCATGGACCTCAATGGATGGAAGTCCGATATGAACACAGGCTGG
GGTTATGGTTTCACTGTGTCTGCCCCTGGCCCCTTGCCGGGCGTCGACTG
GAGCAAGCACACGGGTGCAAACAAAACTGGTTCTATTGGATGGGGTGGCG
GGATGATGACCAATTGGATTGCTTCCGCTGATAATGACTTGCTGGTAGTT
TTTGCCACGCAGCGTTTAGCTACACCTATTCCCAACACATTCCAGGAGAT
CGTGGTGGAGGGTGTGATGAAGTCCATCAAGGGCAACTCTCCCCGCAAGC
TCCCCGGCCCCGAGGGTCCTGCTGTGGACTATGAGGTCGACGATGGGACC
AACCATGCAGGGGGGAGCGGCGGTAACAACCGCGGGTTTGGACTAGGTCG
GGCTGCTAGGAACCCTCTGCCCGGGTTGTGGGGTAATCAGTGGGTGCAGA
CAGACCAGATGGAGCTGTTGGAGTCCTTGACTCAGGAGCAGGCCGAGAGA
TCTGAGACTTATCAGGCAGTCGAAAAGGATGTGGTGGGGACCAAGACGAC
GACTCGTTTCCGCAACAATGCGTAA
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Synonyms
Publications