jgi.p|Nanoce1779_2|587455, mRNA_4672 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|587455
Unique Name	mRNA_4672
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1699
Alignment location	scaffold_9:346819..348848 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	587541
Track	FilteredModels2
ProteinId	587455

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:346819..348848 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587455	gene_4672	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587455	mRNA_4672-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4672	CDS_4672	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:346819..348848+
coding sequence from alignment at scaffold_9:346819..348848+

mRNA sequence

>mRNA_4672 ID=mRNA_4672|Name=jgi.p|Nanoce1779_2|587455|organism=Nannochloropsis oceanica|type=mRNA|length=1699bp
AAACACAACAGTTGTACATAGAAGCTTTTCTGGGGATCATCTACGATACG
GCGTTCCTTCCACCTCGCACATAACATGACCCGCCAAGCAGGATCCTCCA
GCACGCACACCACAGCGGCTCCGCATGCCCCATTTTCTTCTACCGACCAC
AAGACGGTGACGACGATGATGACAAAGGAAAGGCGGCGTGTTATTCTGTT
TAATGGATGGTTGCGGCAATGGTCCTATCCCAGGCTTTGGATGAAGCCTC
TGGCGGAGGATTTGTTGAGAACACGCTACTGCTCCAAGGACGGTGGCAAC
GACAAGCAAGCAGTCGAGGTCGAAGTCGTAGGCAACACAATGCCTGCGCA
GACATCCGACGCGGAAAAATATATTAAGCACTTAGCGGCCATGGTAGGCC
CCGGCGGCCCTGATGAAAACACGTTTTTCATCGGGCAATCGATTGGATGT
CAGGTTATTCTCAGGTATTTGGCACGATTGCCGCCAGGGTCCAAGGTCGG
CGGCTGCCTTTGCGTGGGTTGTTGGTTGACTCTAGATCACACGACGCGGA
AGAGAAGATCCTCCGCGATCGACGAGCTGATTCGGGACGAATGGGACACG
TTCGAGAAGGGGTGGATGGACTATCACAACATTGATTTCGCGAACGTGCG
ACGCGTCTGCCCGCCGGGCAAGCTCATGTGTCTCATGTCCGACAATGACC
CATATCGCGGCCTTGACGACGGTGGACAAAGCAACAAGCAAGACTTTGAG
GAAATTGTGGGCGCACGGGTATTTTTTCGGCATGGCAAAAGCCACTTTAA
CTCGAGCCGGTTGGACGAAGAAGATGTGCGACTGATTGAGACGGATTTGC
TGGGTTTAATCAGGCAAACCTTGCCTGTGGAGGCAGCAATGGTAAAGAGA
AGTAGCAATCGGACGATTAATATTGCCCACAACACAAGTTCTCAAAGGCG
ACGAAAGAATTTGGTTACAAGCAAGGCAAGATCAAAGCTATGAAAAAATC
CAGCGGTGCGATGAACGTAAATCAATTAACACGGTGTGGCATTATGTTTA
TAACAAACTCCTCGTTCTCCAATCTAGTAAGCGTGCGGAAAGCAAATGAG
GGGAGCAATGAAGGCAAACAGGCATGTTAAACATGGGCCCTCAAGAGATA
TGCAGGTAGTCCACTTGCCTCCTGTTACCACAGACAAATCTGAATATGAC
TGGCGAAAGTTTGCAACTGGCCAGAGTAGTCCACCCAGTCGCAGAACATG
GGACGATTTAAGGTGAATGCTTTCTCGCTTTTTATGCCGTATGTTATACG
TACGTGTACATATATATATATCCTTTCCATCTCTTCTTTTTTCCCTTCAA
ATTATTCCAACAATGACGACGACGTCGGCACGTTTGTCCAACAGTATTGT
CATATGTAGGCGGGGCAGAGTGTTGGTTAAGTTGGTTGCTTTTAATAGAC
CTCTTTTCTAATTCTAAGGCCCAAGACGCATAAGCTCGCAAAGTAAAAAC
GTGCCACCCATCACCACGCATGTCCGCTTGTCTGTCCGTCTTTGTTTACA
TGTGTATGTGTGTAAGAGCACTGATTTAATTATTGTGTTGATTTATCATA
ATCAGAAAATATAAGACACCCTAAACACAATCTTGCAAAAACACGGTTTC
ACCAGATGAAAGTAAGAAATCCACCAATAGGGAAAGCATAGATATATTT

protein sequence of jgi.p|Nanoce1779_2|587455

>mRNA_4672-protein ID=mRNA_4672-protein|Name=jgi.p|Nanoce1779_2|587455|organism=Nannochloropsis oceanica|type=polypeptide|length=306bp
MTRQAGSSSTHTTAAPHAPFSSTDHKTVTTMMTKERRRVILFNGWLRQWS
YPRLWMKPLAEDLLRTRYCSKDGGNDKQAVEVEVVGNTMPAQTSDAEKYI
KHLAAMVGPGGPDENTFFIGQSIGCQVILRYLARLPPGSKVGGCLCVGCW
LTLDHTTRKRRSSAIDELIRDEWDTFEKGWMDYHNIDFANVRRVCPPGKL
MCLMSDNDPYRGLDDGGQSNKQDFEEIVGARVFFRHGKSHFNSSRLDEED
VRLIETDLLGLIRQTLPVEAAMVKRSSNRTINIAHNTSSQRRRKNLVTSK
ARSKL*

mRNA from alignment at scaffold_9:346819..348848+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4672 ID=mRNA_4672|Name=jgi.p|Nanoce1779_2|587455|organism=Nannochloropsis oceanica|type=mRNA|length=2030bp|location=Sequence derived from alignment at scaffold_9:346819..348848+ (Nannochloropsis oceanica)
AAACACAACAGTTGTACATAGAAGCTTTTCTGGGGATCATCTACGATACG
GCGTTCCTTCCACCTCGCACATAACATGACCCGCCAAGCAGGATCCTCCA
GCACGCACACCACAGCGGCTCCGCATGCCCCATTTTCTTCTACCGACCAC
AAGACGGTGACGACGATGATGACAAAGGAAAGGCGGCGTGTTATTCTGTT
TAATGGATGGTTGCGGCAATGGTCCTATCCCAGGCTTTGGATGAAGCCTC
TGGCGGAGGATTTGTTGAGAACACGCTACTGCTCCAAGGACGGTGGCAAC
GACAAGCAAGCAGTCGAGGTCGAAGTCGTAGGCAACACAATGCCTGCGCA
GACATCCGACGCGGAAAAATATATTAAGCACTTAGCGGCCATGGTAGGCC
CCGGCGGCCCTGATGAAAACACGTTTTTCATCGGGCAATCGATTGGATGT
CAGGTTATTCTCAGGTATTTGGCACGATTGCCGCCAGGGTCCAAGGTAAG
AGCAAGACGTCTGTTCAATCCTAGCGGATAGGATTGTATGCACAACGAGG
GTGGATTCCTTTGAAATTTCATATAACGGGTCCGCCTCTTTGAGCAGCGA
GTGTGAGCGTGACTTATTGCCATGATTAATTCTCAGACTGCCCATATGTA
GTAAATTATGTAGCCAGCAGGATGCGGGAGTCTGTGACATTTAATTCTCT
TCATCATATTACCTTCTCTCTTGGAATGTTTCCGGTCCTCTCCTCAGGTC
GGCGGCTGCCTTTGCGTGGGTTGTTGGTTGACTCTAGATCACACGACGCG
GAAGAGAAGATCCTCCGCGATCGACGAGCTGATTCGGGACGAATGGGACA
CGTTCGAGAAGGGGTGGATGGACTATCACAACATTGATTTCGCGGTACGG
TTTTGCGGCTCATATTCCTGCACGGTGCTTGCGTCACACTGACATTATTG
TTCAACTTTTTTCTCCCGCTCAGAACGTGCGACGCGTCTGCCCGCCGGGC
AAGCTCATGTGTCTCATGTCCGACAATGACCCATATCGCGGCCTTGACGA
CGGTGGACAAAGCAACAAGCAAGACTTTGAGGAAATTGTGGGCGCACGGG
TATTTTTTCGGCATGGCAAAAGCCACTTTAACTCGAGCCGGTTGGACGAA
GAAGATGTGCGACTGATTGAGACGGATTTGCTGGGTTTAATCAGGCAAAC
CTTGCCTGTGGAGGCAGCAATGGTAAAGAGAAGTAGCAATCGGACGATTA
ATATTGCCCACAACACAAGTTCTCAAAGGCGACGAAAGAATTTGGTTACA
AGCAAGGCAAGATCAAAGCTATGAAAAAATCCAGCGGTGCGATGAACGTA
AATCAATTAACACGGTGTGGCATTATGTTTATAACAAACTCCTCGTTCTC
CAATCTAGTAAGCGTGCGGAAAGCAAATGAGGGGAGCAATGAAGGCAAAC
AGGCATGTTAAACATGGGCCCTCAAGAGATATGCAGGTAGTCCACTTGCC
TCCTGTTACCACAGACAAATCTGAATATGACTGGCGAAAGTTTGCAACTG
GCCAGAGTAGTCCACCCAGTCGCAGAACATGGGACGATTTAAGGTGAATG
CTTTCTCGCTTTTTATGCCGTATGTTATACGTACGTGTACATATATATAT
ATCCTTTCCATCTCTTCTTTTTTCCCTTCAAATTATTCCAACAATGACGA
CGACGTCGGCACGTTTGTCCAACAGTATTGTCATATGTAGGCGGGGCAGA
GTGTTGGTTAAGTTGGTTGCTTTTAATAGACCTCTTTTCTAATTCTAAGG
CCCAAGACGCATAAGCTCGCAAAGTAAAAACGTGCCACCCATCACCACGC
ATGTCCGCTTGTCTGTCCGTCTTTGTTTACATGTGTATGTGTGTAAGAGC
ACTGATTTAATTATTGTGTTGATTTATCATAATCAGAAAATATAAGACAC
CCTAAACACAATCTTGCAAAAACACGGTTTCACCAGATGAAAGTAAGAAA
TCCACCAATAGGGAAAGCATAGATATATTT

Coding sequence (CDS) from alignment at scaffold_9:346819..348848+

>mRNA_4672 ID=mRNA_4672|Name=jgi.p|Nanoce1779_2|587455|organism=Nannochloropsis oceanica|type=CDS|length=2754bp|location=Sequence derived from alignment at scaffold_9:346819..348848+ (Nannochloropsis oceanica)
ATGACCCGCCAAGCAGGATCCTCCAGCACGCACACCACAGCGGCTCCGCA
TGCCCCATTTTCTTCTACCGACCACAAGACGGTGACGACGATGATGACAA
AGGAAAGGCGGCGTGTTATTCTGTTTAATGGATGGTTGCGGCAATGGTCC
TATCCCAGGCTTTGGATGAAGCCTCTGGCGGAGGATTTGTTGAGAACACG
CTACTGCTCCAAGGACGGTGGCAACGACAAGCAAGCAGTCGAGGTCGAAG
TCGTAGGCAACACAATGCCTGCGCAGACATCCGACGCGGAAAAATATATT
AAGCACTTAGCGGCCATGGTAGGCCCCGGCGGCCCTGATGAAAACACGTT
TTTCATCGGGCAATCGATTGGATGTCAGGTTATTCTCAGGTATTTGGCAC
GATTGCCGCCAGGGTCCAAGGTCGGCGGCTGCCTTTGCGTGGGTTGTTGG
TTGACTCTAGATCACACGACGCGGAAGAGAAGATCCTCCGCGATCGACGA
GCTGATTCGGGACGAATGGGACACGTTCGAGAAGGGGTGGATGGACTATC
ACAACATTGATTTCGCGAACGTGCGACGCGTCTGCCCGCCGGGCAAGCTC
ATGTGTCTCATGTCCGACAATGACCCATATCGCGGCCTTGACGACGGTGG
ACAAAGCAACAAGCAAGACTTTGAGGAAATTGTGGGCGCACGGGTATTTT
TTCGGCATGGCAAAAGCCACTTTAACTCGAGCCGGTTGGACGAAGAAGAT
GTGCGACTGATTGAGACGGATTTGCTGGGTTTAATCAGGCAAACCTTGCC
TGTGGAGGCAGCAATGGTAAAGAGAAGTAGCAATCGGACGATTAATATTG
CCCACAACACAAGTTCTCAAAGGCGACGAAAGAATTTGGTTACAAGCAAG
GCAAGATCAAAGCTATGAATGACCCGCCAAGCAGGATCCTCCAGCACGCA
CACCACAGCGGCTCCGCATGCCCCATTTTCTTCTACCGACCACAAGACGG
TGACGACGATGATGACAAAGGAAAGGCGGCGTGTTATTCTGTTTAATGGA
TGGTTGCGGCAATGGTCCTATCCCAGGCTTTGGATGAAGCCTCTGGCGGA
GGATTTGTTGAGAACACGCTACTGCTCCAAGGACGGTGGCAACGACAAGC
AAGCAGTCGAGGTCGAAGTCGTAGGCAACACAATGCCTGCGCAGACATCC
GACGCGGAAAAATATATTAAGCACTTAGCGGCCATGGTAGGCCCCGGCGG
CCCTGATGAAAACACGTTTTTCATCGGGCAATCGATTGGATGTCAGGTTA
TTCTCAGGTATTTGGCACGATTGCCGCCAGGGTCCAAGGTCGGCGGCTGC
CTTTGCGTGGGTTGTTGGTTGACTCTAGATCACACGACGCGGAAGAGAAG
ATCCTCCGCGATCGACGAGCTGATTCGGGACGAATGGGACACGTTCGAGA
AGGGGTGGATGGACTATCACAACATTGATTTCGCGAACGTGCGACGCGTC
TGCCCGCCGGGCAAGCTCATGTGTCTCATGTCCGACAATGACCCATATCG
CGGCCTTGACGACGGTGGACAAAGCAACAAGCAAGACTTTGAGGAAATTG
TGGGCGCACGGGTATTTTTTCGGCATGGCAAAAGCCACTTTAACTCGAGC
CGGTTGGACGAAGAAGATGTGCGACTGATTGAGACGGATTTGCTGGGTTT
AATCAGGCAAACCTTGCCTGTGGAGGCAGCAATGGTAAAGAGAAGTAGCA
ATCGGACGATTAATATTGCCCACAACACAAGTTCTCAAAGGCGACGAAAG
AATTTGGTTACAAGCAAGGCAAGATCAAAGCTATGAATGACCCGCCAAGC
AGGATCCTCCAGCACGCACACCACAGCGGCTCCGCATGCCCCATTTTCTT
CTACCGACCACAAGACGGTGACGACGATGATGACAAAGGAAAGGCGGCGT
GTTATTCTGTTTAATGGATGGTTGCGGCAATGGTCCTATCCCAGGCTTTG
GATGAAGCCTCTGGCGGAGGATTTGTTGAGAACACGCTACTGCTCCAAGG
ACGGTGGCAACGACAAGCAAGCAGTCGAGGTCGAAGTCGTAGGCAACACA
ATGCCTGCGCAGACATCCGACGCGGAAAAATATATTAAGCACTTAGCGGC
CATGGTAGGCCCCGGCGGCCCTGATGAAAACACGTTTTTCATCGGGCAAT
CGATTGGATGTCAGGTTATTCTCAGGTATTTGGCACGATTGCCGCCAGGG
TCCAAGGTCGGCGGCTGCCTTTGCGTGGGTTGTTGGTTGACTCTAGATCA
CACGACGCGGAAGAGAAGATCCTCCGCGATCGACGAGCTGATTCGGGACG
AATGGGACACGTTCGAGAAGGGGTGGATGGACTATCACAACATTGATTTC
GCGAACGTGCGACGCGTCTGCCCGCCGGGCAAGCTCATGTGTCTCATGTC
CGACAATGACCCATATCGCGGCCTTGACGACGGTGGACAAAGCAACAAGC
AAGACTTTGAGGAAATTGTGGGCGCACGGGTATTTTTTCGGCATGGCAAA
AGCCACTTTAACTCGAGCCGGTTGGACGAAGAAGATGTGCGACTGATTGA
GACGGATTTGCTGGGTTTAATCAGGCAAACCTTGCCTGTGGAGGCAGCAA
TGGTAAAGAGAAGTAGCAATCGGACGATTAATATTGCCCACAACACAAGT
TCTCAAAGGCGACGAAAGAATTTGGTTACAAGCAAGGCAAGATCAAAGCT
ATGA

Synonyms

Publications