jgi.p|Nanoce1779_2|587448, mRNA_4671 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587448
Unique NamemRNA_4671
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1160
Alignment locationscaffold_9:344350..345946 -

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Properties
Property NameValue
TranscriptId587534
TrackFilteredModels2
ProteinId587448
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:344350..345946 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587448gene_4671Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587448mRNA_4671-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4671CDS_4671Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4671 ID=mRNA_4671|Name=jgi.p|Nanoce1779_2|587448|organism=Nannochloropsis oceanica|type=mRNA|length=1160bp
CAGACGTTTAACCACTGCCACCACAACCCCCTCTACCGGACACGATATGG
GGGCCAAGCACTCCATCGTGGCCATCGTGCCCGAACCTCTCGAGCTGCAA
AGCGGTCCAGATGGCTCGTCCATCCATGCAGAATTGCTCCCCAAGGCCTA
CCGCCACCTGAGCCAATTTCCCGTGCTGGGCAAGAAGGCTCGGGGCCCCA
TTCGCCCATACCCAAACGAGAATGTAACGCACTTCCTGAAGGAGCAGACC
GAGCCCGCTGCCCTCATCGCGGATTTCTTGTCTGTCCAAGAGCGCTTAGC
CTTTTTGCAGACTCACAAAGTGGGTCTTCCTCCAAAGCTTCTCAAGCCCC
TCCTCTTCAAAGGGCCCTCCCGGGAGCTCAACTTTTTGTGCTGTCCAACT
ACTACCGCTGCCGTCGAAAACCCTTCCTCTTTGAACACCAATTATGACAA
CCCTGTGGTCGCAAATGGTGCGGGGATGGTAGATAAGAACGAGCAGGGAA
AGTGCTTCCAACTCGAGGTGCGGTATCGGGGCAGCGTATTGTCCCGGGCC
GTGCCCTTGCCGCTGGTAGCCACTGCCCTTCACCGGGTGATTCGAAGCTG
GCTTGACAATCGCTTGCGCAAGCAAGGCTTTCCTTTGATCCTGGCCATGG
TGAATAAGCTCCTTTCCGTCTTCCGACCTACGGAAGAGGTCTGGTATGCA
ATTGTGAATAATTGCGGAGAGGACGGGGCCTCCCTTCTTACGTATGCCTG
CGCAGACCCCTCTATTCCACTCCCCATCATCGAGCAACTTCTTGAAATTC
CATGCCTTGATCTGGGCCTCCCTGACCGAAAGAGTGGACTCAATGCTATT
CAGCTTGCACACACCAAAAACCGTCAAGAGCTGCTCGTCTACTTTGCATC
ATTGGTCGGTTTCTAAATATTCCCGTGGAAAATGATTCGGTCCGCTGCGA
GCTTTGGTAGCGTGGCAGAATCGCGCCATGACTTCCCCCGGACATTTGCG
AAGGGGCTTTCACACGAGGTCAAAATAAATGTGCAACGCAAGAAGAAGAA
ATAATCGGATTTGTAAAGGTGTGTGTCGGCATTGAGCTGGTCAAGCACAA
CAAAAAACCCATTATGCACCATACATCGCCACATTGCCAAATTAATTACG
CATTATTTGT
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protein sequence of jgi.p|Nanoce1779_2|587448

>mRNA_4671-protein ID=mRNA_4671-protein|Name=jgi.p|Nanoce1779_2|587448|organism=Nannochloropsis oceanica|type=polypeptide|length=290bp
MGAKHSIVAIVPEPLELQSGPDGSSIHAELLPKAYRHLSQFPVLGKKARG
PIRPYPNENVTHFLKEQTEPAALIADFLSVQERLAFLQTHKVGLPPKLLK
PLLFKGPSRELNFLCCPTTTAAVENPSSLNTNYDNPVVANGAGMVDKNEQ
GKCFQLEVRYRGSVLSRAVPLPLVATALHRVIRSWLDNRLRKQGFPLILA
MVNKLLSVFRPTEEVWYAIVNNCGEDGASLLTYACADPSIPLPIIEQLLE
IPCLDLGLPDRKSGLNAIQLAHTKNRQELLVYFASLVGF*
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mRNA from alignment at scaffold_9:344350..345946-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4671 ID=mRNA_4671|Name=jgi.p|Nanoce1779_2|587448|organism=Nannochloropsis oceanica|type=mRNA|length=1597bp|location=Sequence derived from alignment at scaffold_9:344350..345946- (Nannochloropsis oceanica)
CAGACGTTTAACCACTGCCACCACAACCCCCTCTACCGGACACGATATGG
GGGCCAAGCACTCCATCGTGGCCATCGTGCCCGAACCTCTCGAGCTGCAA
AGCGGTCCAGATGGCTCGTCCATCCATGCAGAATTGCTCCCCAAGGCCTA
CCGCCACCTGAGCCAATTTCCCGTGCTGGGCAAGAAGGCTCGGGGCCCCA
TTCGCCCATACCCAAACGAGAATGTAACGCAGTGAGTCATACGTGTTAGG
GGGAGCAAGAGGAAGAAAGGCTCAATGACAAAGATTGTTCTTTTCCCACA
GCCATGTATAGAATGAAGACACTCTTATATCTTGTCCAAAACAATTCCTC
TCCCATCTACCCACAGCTTCCTGAAGGAGCAGACCGAGCCCGCTGCCCTC
ATCGCGGATTTCTTGTCTGTCCAAGAGCGCTTAGCCTTTTTGCAGACTCA
CAAGTACGTTGCATATGTATGACGTATCTCCGTTTCATTCGCTGGTGTTG
GATGTAGTACTGGACTCTTTTACCGACACGCTTGTCCTCTTCTCATACCA
CACGACCTGTCTGCATACCCATGTCTCTCTCTGAATGGGACCGATCCCCC
ACCTCCTCAACACCTGATTATGTCCTAACCATGCTCCAATTGAAGCACTG
GATACGCATCTTCCAGCGAATTATTTATAACGTCTCACTCTCAACACACA
CGCGGTGACCTACTCACTGACTCACCTTTGCACCACAACCACGACTAACG
AACAGAGTGGGTCTTCCTCCAAAGCTTCTCAAGCCCCTCCTCTTCAAAGG
GCCCTCCCGGGAGCTCAACTTTTTGTGCTGTCCAACTACTACCGCTGCCG
TCGAAAACCCTTCCTCTTTGAACACCAATTATGACAACCCTGTGGTCGCA
AATGGTGCGGGGATGGTAGATAAGAACGAGCAGGGAAAGTGCTTCCAACT
CGAGGTGCGGTATCGGGGCAGCGTATTGTCCCGGGCCGTGCCCTTGCCGC
TGGTAGCCACTGCCCTTCACCGGGTGATTCGAAGCTGGCTTGACAATCGC
TTGCGCAAGCAAGGCTTTCCTTTGATCCTGGCCATGGTGAATAAGCTCCT
TTCCGTCTTCCGACCTACGGAAGAGGTCTGGTATGCAATTGTGAATAATT
GCGGAGAGGACGGGGCCTCCCTTCTTACGTATGCCTGCGCAGACCCCTCT
ATTCCACTCCCCATCATCGAGCAACTTCTTGAAATTCCATGCCTTGATCT
GGGCCTCCCTGACCGAAAGAGTGGACTCAATGCTATTCAGCTTGCACACA
CCAAAAACCGTCAAGAGCTGCTCGTCTACTTTGCATCATTGGTCGGTTTC
TAAATATTCCCGTGGAAAATGATTCGGTCCGCTGCGAGCTTTGGTAGCGT
GGCAGAATCGCGCCATGACTTCCCCCGGACATTTGCGAAGGGGCTTTCAC
ACGAGGTCAAAATAAATGTGCAACGCAAGAAGAAGAAATAATCGGATTTG
TAAAGGTGTGTGTCGGCATTGAGCTGGTCAAGCACAACAAAAAACCCATT
ATGCACCATACATCGCCACATTGCCAAATTAATTACGCATTATTTGT
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Coding sequence (CDS) from alignment at scaffold_9:344350..345946-

>mRNA_4671 ID=mRNA_4671|Name=jgi.p|Nanoce1779_2|587448|organism=Nannochloropsis oceanica|type=CDS|length=2610bp|location=Sequence derived from alignment at scaffold_9:344350..345946- (Nannochloropsis oceanica)
AGTGGGTCTTCCTCCAAAGCTTCTCAAGCCCCTCCTCTTCAAAGGGCCCT
CCCGGGAGCTCAACTTTTTGTGCTGTCCAACTACTACCGCTGCCGTCGAA
AACCCTTCCTCTTTGAACACCAATTATGACAACCCTGTGGTCGCAAATGG
TGCGGGGATGGTAGATAAGAACGAGCAGGGAAAGTGCTTCCAACTCGAGG
TGCGGTATCGGGGCAGCGTATTGTCCCGGGCCGTGCCCTTGCCGCTGGTA
GCCACTGCCCTTCACCGGGTGATTCGAAGCTGGCTTGACAATCGCTTGCG
CAAGCAAGGCTTTCCTTTGATCCTGGCCATGGTGAATAAGCTCCTTTCCG
TCTTCCGACCTACGGAAGAGGTCTGGTATGCAATTGTGAATAATTGCGGA
GAGGACGGGGCCTCCCTTCTTACGTATGCCTGCGCAGACCCCTCTATTCC
ACTCCCCATCATCGAGCAACTTCTTGAAATTCCATGCCTTGATCTGGGCC
TCCCTGACCGAAAGAGTGGACTCAATGCTATTCAGCTTGCACACACCAAA
AACCGTCAAGAGCTGCTCGTCTACTTTGCATCATTGGTCGGTTTCTAACT
TCCTGAAGGAGCAGACCGAGCCCGCTGCCCTCATCGCGGATTTCTTGTCT
GTCCAAGAGCGCTTAGCCTTTTTGCAGACTCACAAATGGGGGCCAAGCAC
TCCATCGTGGCCATCGTGCCCGAACCTCTCGAGCTGCAAAGCGGTCCAGA
TGGCTCGTCCATCCATGCAGAATTGCTCCCCAAGGCCTACCGCCACCTGA
GCCAATTTCCCGTGCTGGGCAAGAAGGCTCGGGGCCCCATTCGCCCATAC
CCAAACGAGAATGTAACGCAAGTGGGTCTTCCTCCAAAGCTTCTCAAGCC
CCTCCTCTTCAAAGGGCCCTCCCGGGAGCTCAACTTTTTGTGCTGTCCAA
CTACTACCGCTGCCGTCGAAAACCCTTCCTCTTTGAACACCAATTATGAC
AACCCTGTGGTCGCAAATGGTGCGGGGATGGTAGATAAGAACGAGCAGGG
AAAGTGCTTCCAACTCGAGGTGCGGTATCGGGGCAGCGTATTGTCCCGGG
CCGTGCCCTTGCCGCTGGTAGCCACTGCCCTTCACCGGGTGATTCGAAGC
TGGCTTGACAATCGCTTGCGCAAGCAAGGCTTTCCTTTGATCCTGGCCAT
GGTGAATAAGCTCCTTTCCGTCTTCCGACCTACGGAAGAGGTCTGGTATG
CAATTGTGAATAATTGCGGAGAGGACGGGGCCTCCCTTCTTACGTATGCC
TGCGCAGACCCCTCTATTCCACTCCCCATCATCGAGCAACTTCTTGAAAT
TCCATGCCTTGATCTGGGCCTCCCTGACCGAAAGAGTGGACTCAATGCTA
TTCAGCTTGCACACACCAAAAACCGTCAAGAGCTGCTCGTCTACTTTGCA
TCATTGGTCGGTTTCTAACTTCCTGAAGGAGCAGACCGAGCCCGCTGCCC
TCATCGCGGATTTCTTGTCTGTCCAAGAGCGCTTAGCCTTTTTGCAGACT
CACAAATGGGGGCCAAGCACTCCATCGTGGCCATCGTGCCCGAACCTCTC
GAGCTGCAAAGCGGTCCAGATGGCTCGTCCATCCATGCAGAATTGCTCCC
CAAGGCCTACCGCCACCTGAGCCAATTTCCCGTGCTGGGCAAGAAGGCTC
GGGGCCCCATTCGCCCATACCCAAACGAGAATGTAACGCAAGTGGGTCTT
CCTCCAAAGCTTCTCAAGCCCCTCCTCTTCAAAGGGCCCTCCCGGGAGCT
CAACTTTTTGTGCTGTCCAACTACTACCGCTGCCGTCGAAAACCCTTCCT
CTTTGAACACCAATTATGACAACCCTGTGGTCGCAAATGGTGCGGGGATG
GTAGATAAGAACGAGCAGGGAAAGTGCTTCCAACTCGAGGTGCGGTATCG
GGGCAGCGTATTGTCCCGGGCCGTGCCCTTGCCGCTGGTAGCCACTGCCC
TTCACCGGGTGATTCGAAGCTGGCTTGACAATCGCTTGCGCAAGCAAGGC
TTTCCTTTGATCCTGGCCATGGTGAATAAGCTCCTTTCCGTCTTCCGACC
TACGGAAGAGGTCTGGTATGCAATTGTGAATAATTGCGGAGAGGACGGGG
CCTCCCTTCTTACGTATGCCTGCGCAGACCCCTCTATTCCACTCCCCATC
ATCGAGCAACTTCTTGAAATTCCATGCCTTGATCTGGGCCTCCCTGACCG
AAAGAGTGGACTCAATGCTATTCAGCTTGCACACACCAAAAACCGTCAAG
AGCTGCTCGTCTACTTTGCATCATTGGTCGGTTTCTAACTTCCTGAAGGA
GCAGACCGAGCCCGCTGCCCTCATCGCGGATTTCTTGTCTGTCCAAGAGC
GCTTAGCCTTTTTGCAGACTCACAAATGGGGGCCAAGCACTCCATCGTGG
CCATCGTGCCCGAACCTCTCGAGCTGCAAAGCGGTCCAGATGGCTCGTCC
ATCCATGCAGAATTGCTCCCCAAGGCCTACCGCCACCTGAGCCAATTTCC
CGTGCTGGGCAAGAAGGCTCGGGGCCCCATTCGCCCATACCCAAACGAGA
ATGTAACGCA
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Synonyms
Publications