jgi.p|Nanoce1779_2|537606, mRNA_467 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|537606
Unique Name	mRNA_467
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1786
Alignment location	scaffold_3:1135337..1137192 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	537692
Track	FilteredModels2
ProteinId	537606

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1135337..1137192 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|537606	gene_467	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|537606	mRNA_467-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_467	CDS_467	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1135337..1137192-
coding sequence from alignment at scaffold_3:1135337..1137192-

mRNA sequence

>mRNA_467 ID=mRNA_467|Name=jgi.p|Nanoce1779_2|537606|organism=Nannochloropsis oceanica|type=mRNA|length=1786bp
ACAGACCGTAATAATCTGCGGAAGTCTTCCCCTTCCCTGTGACCTCCTCT
CCCAAACCTCAAGCCGCCAACCAAGACGCCAAAGGCATGGGCAAGAAAAG
TGCGCGTGCCCTGGCCGCGGCAGGCAAAAAAGGAAAGGGCGCAGGATTGA
CAAGTGACGATGAACGCGAAAGCGTTACCTCTGAGGCCTCATTCCTCTCC
CAAGAGGCTGTGGAGCATCCCGCTTCTGCGATCGTGGACGATTCGGTCGC
AGGTTCAAACAGTAGAGTCGCTTCTCCTGCTTATGAGAACGAGGCGGATT
TTGCTGAGGTGCTTGAAAAGCTGGCGGAGAAACGAACGTCGACCCGCGAG
ACTGGCTTGAAGGAGTTGACTGCAGGGCTTCGCTCGTACGCATTTGCCGA
TGCGGCGCAGGCAAACCGCGAAATAATCTTCTCGACTTTGATTAGTCTGA
TCCGCCGGGGTGGGGAGAAGGAGGGTGTGTTGTGTGCTGAGGCCTTGGGG
TTGATGTTTTTGTTGATTGGACCGGAGGAAGACGAGATTTTCATGCAGAT
CCGCGGACCCTTGGAATATCTAGTGACGCGCGGGCAGCATGAAGAGGTGA
GGGTGGAGGCTGCACGAGCTTTGGCGATGGGGTCATTTATTTGTAATACG
GAGGAGGAGGTGACGTTGGCGAACCTGTCGTTTTTCCAAGGCTTATTTTC
GGGTGAAAGCGAGGGAGAAAGGGCCTCCGAAGAGCTCAAGGCTGCGGGCG
TCGATTCTTGGGCACTTTTAGCGACTGTTGCACCTAATGGCTACCACACG
CATGAATTAAGGGTTCAGTTGCTAGAGGAGCTGCTGGGACTGCTGGATGC
TTCGTCGGCTGAGTTGAAGGTGGCGGCGGGGGAGGGGTTGGCTTTGCTGC
GTGAGTACTGGCGCCAGGTCCCTGTGGCCTCTCATGATGTATCGGCGGAG
GAGGAGGATTTGCTGGAAAGTATTGTGGATAGATTGCGGGACATGGCTAG
AGAGGGGAGTAAACGGATGAGTCGAAAAGATAAGAAAGCGCAGAGGGCGT
CGTTTCGTGAGGTATACGCGGCAGTGGCGGAGGGACAGCCTCCAGAGGAG
GTGATTAATTTTAGGACGCGGAGCTTTCGGTTGACAAGTTGGGTGAAGAT
GAAGCAGTTAGAATCGTTTCGAGACTGTCTACAGGGGGGCTTGTTGGCGG
CTTTTGGGACGAACCCGGTAATTCACGATGTGCTGGAAATCGACCCTGCG
AGCTTCGAGACGCCGTTGGAGAGGAGAATGGTTGATAAAAACAGCGAATT
GGGAAAGTGGAGGACGACGACCCGCTCCAGGAATCGTCGGACAAGAGAGA
GTGCTAAGCATCATTTTACGGAGGATGGGGAGGATAGTTAGAGGATTTGG
GCGGTGGGGAGGTAGGTAAGTTTTAGAGAGGTGGAAGAGGGAAATGAGGG
TAGTGACGGGAGAATGAAGGGGAGGAGAGATGTTTCAGGGAGCGCTGGGT
TGAGAAGTCCAAGCGGTGATGAGTCAAAAATCATATAGATTGGTAGGTGT
AGAGTTGTGCATGTGCTCGGACATTTGCGTGCTGATGTACGTGCCTGCGG
TATGCACAAGAAAAAAGGGGACGAGCGGGGGGGAAGGTTCTAGAGACCAG
TATGAGGAAGAGACGAGATACAGTTGACTCACTACAGTAGTTCTCTTCCT
AGCTTTCACAGAAAGACCTGAAAAGGTTACGACAAAGACGTAGTGCGTAA
CAACAAATAAAGAAAAGAACACTGGGAAACTCTGAC

protein sequence of jgi.p|Nanoce1779_2|537606

>mRNA_467-protein ID=mRNA_467-protein|Name=jgi.p|Nanoce1779_2|537606|organism=Nannochloropsis oceanica|type=polypeptide|length=435bp
MGKKSARALAAAGKKGKGAGLTSDDERESVTSEASFLSQEAVEHPASAIV
DDSVAGSNSRVASPAYENEADFAEVLEKLAEKRTSTRETGLKELTAGLRS
YAFADAAQANREIIFSTLISLIRRGGEKEGVLCAEALGLMFLLIGPEEDE
IFMQIRGPLEYLVTRGQHEEVRVEAARALAMGSFICNTEEEVTLANLSFF
QGLFSGESEGERASEELKAAGVDSWALLATVAPNGYHTHELRVQLLEELL
GLLDASSAELKVAAGEGLALLREYWRQVPVASHDVSAEEEDLLESIVDRL
RDMAREGSKRMSRKDKKAQRASFREVYAAVAEGQPPEEVINFRTRSFRLT
SWVKMKQLESFRDCLQGGLLAAFGTNPVIHDVLEIDPASFETPLERRMVD
KNSELGKWRTTTRSRNRRTRESAKHHFTEDGEDS*

mRNA from alignment at scaffold_3:1135337..1137192-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_467 ID=mRNA_467|Name=jgi.p|Nanoce1779_2|537606|organism=Nannochloropsis oceanica|type=mRNA|length=1856bp|location=Sequence derived from alignment at scaffold_3:1135337..1137192- (Nannochloropsis oceanica)
ACAGACCGTAATAATCTGCGGAAGTCTTCCCCTTCCCTGTGACCTCCTCT
CCCAAACCTCAAGCCGCCAACCAAGACGCCAAAGGCATGGGCAAGAAAAG
TAAGTACCGTCGTTACGTGGCACAATGCCTGTATGTCTTGAGCTGGCATA
CCATCTCTCTTCCCTTTAGGTGCGCGTGCCCTGGCCGCGGCAGGCAAAAA
AGGAAAGGGCGCAGGATTGACAAGTGACGATGAACGCGAAAGCGTTACCT
CTGAGGCCTCATTCCTCTCCCAAGAGGCTGTGGAGCATCCCGCTTCTGCG
ATCGTGGACGATTCGGTCGCAGGTTCAAACAGTAGAGTCGCTTCTCCTGC
TTATGAGAACGAGGCGGATTTTGCTGAGGTGCTTGAAAAGCTGGCGGAGA
AACGAACGTCGACCCGCGAGACTGGCTTGAAGGAGTTGACTGCAGGGCTT
CGCTCGTACGCATTTGCCGATGCGGCGCAGGCAAACCGCGAAATAATCTT
CTCGACTTTGATTAGTCTGATCCGCCGGGGTGGGGAGAAGGAGGGTGTGT
TGTGTGCTGAGGCCTTGGGGTTGATGTTTTTGTTGATTGGACCGGAGGAA
GACGAGATTTTCATGCAGATCCGCGGACCCTTGGAATATCTAGTGACGCG
CGGGCAGCATGAAGAGGTGAGGGTGGAGGCTGCACGAGCTTTGGCGATGG
GGTCATTTATTTGTAATACGGAGGAGGAGGTGACGTTGGCGAACCTGTCG
TTTTTCCAAGGCTTATTTTCGGGTGAAAGCGAGGGAGAAAGGGCCTCCGA
AGAGCTCAAGGCTGCGGGCGTCGATTCTTGGGCACTTTTAGCGACTGTTG
CACCTAATGGCTACCACACGCATGAATTAAGGGTTCAGTTGCTAGAGGAG
CTGCTGGGACTGCTGGATGCTTCGTCGGCTGAGTTGAAGGTGGCGGCGGG
GGAGGGGTTGGCTTTGCTGCGTGAGTACTGGCGCCAGGTCCCTGTGGCCT
CTCATGATGTATCGGCGGAGGAGGAGGATTTGCTGGAAAGTATTGTGGAT
AGATTGCGGGACATGGCTAGAGAGGGGAGTAAACGGATGAGTCGAAAAGA
TAAGAAAGCGCAGAGGGCGTCGTTTCGTGAGGTATACGCGGCAGTGGCGG
AGGGACAGCCTCCAGAGGAGGTGATTAATTTTAGGACGCGGAGCTTTCGG
TTGACAAGTTGGGTGAAGATGAAGCAGTTAGAATCGTTTCGAGACTGTCT
ACAGGGGGGCTTGTTGGCGGCTTTTGGGACGAACCCGGTAATTCACGATG
TGCTGGAAATCGACCCTGCGAGCTTCGAGACGCCGTTGGAGAGGAGAATG
GTTGATAAAAACAGCGAATTGGGAAAGTGGAGGACGACGACCCGCTCCAG
GAATCGTCGGACAAGAGAGAGTGCTAAGCATCATTTTACGGAGGATGGGG
AGGATAGTTAGAGGATTTGGGCGGTGGGGAGGTAGGTAAGTTTTAGAGAG
GTGGAAGAGGGAAATGAGGGTAGTGACGGGAGAATGAAGGGGAGGAGAGA
TGTTTCAGGGAGCGCTGGGTTGAGAAGTCCAAGCGGTGATGAGTCAAAAA
TCATATAGATTGGTAGGTGTAGAGTTGTGCATGTGCTCGGACATTTGCGT
GCTGATGTACGTGCCTGCGGTATGCACAAGAAAAAAGGGGACGAGCGGGG
GGGAAGGTTCTAGAGACCAGTATGAGGAAGAGACGAGATACAGTTGACTC
ACTACAGTAGTTCTCTTCCTAGCTTTCACAGAAAGACCTGAAAAGGTTAC
GACAAAGACGTAGTGCGTAACAACAAATAAAGAAAAGAACACTGGGAAAC
TCTGAC

Coding sequence (CDS) from alignment at scaffold_3:1135337..1137192-

>mRNA_467 ID=mRNA_467|Name=jgi.p|Nanoce1779_2|537606|organism=Nannochloropsis oceanica|type=CDS|length=2610bp|location=Sequence derived from alignment at scaffold_3:1135337..1137192- (Nannochloropsis oceanica)
GTGCGCGTGCCCTGGCCGCGGCAGGCAAAAAAGGAAAGGGCGCAGGATTG
ACAAGTGACGATGAACGCGAAAGCGTTACCTCTGAGGCCTCATTCCTCTC
CCAAGAGGCTGTGGAGCATCCCGCTTCTGCGATCGTGGACGATTCGGTCG
CAGGTTCAAACAGTAGAGTCGCTTCTCCTGCTTATGAGAACGAGGCGGAT
TTTGCTGAGGTGCTTGAAAAGCTGGCGGAGAAACGAACGTCGACCCGCGA
GACTGGCTTGAAGGAGTTGACTGCAGGGCTTCGCTCGTACGCATTTGCCG
ATGCGGCGCAGGCAAACCGCGAAATAATCTTCTCGACTTTGATTAGTCTG
ATCCGCCGGGGTGGGGAGAAGGAGGGTGTGTTGTGTGCTGAGGCCTTGGG
GTTGATGTTTTTGTTGATTGGACCGGAGGAAGACGAGATTTTCATGCAGA
TCCGCGGACCCTTGGAATATCTAGTGACGCGCGGGCAGCATGAAGAGGTG
AGGGTGGAGGCTGCACGAGCTTTGGCGATGGGGTCATTTATTTGTAATAC
GGAGGAGGAGGTGACGTTGGCGAACCTGTCGTTTTTCCAAGGCTTATTTT
CGGGTGAAAGCGAGGGAGAAAGGGCCTCCGAAGAGCTCAAGGCTGCGGGC
GTCGATTCTTGGGCACTTTTAGCGACTGTTGCACCTAATGGCTACCACAC
GCATGAATTAAGGGTTCAGTTGCTAGAGGAGCTGCTGGGACTGCTGGATG
CTTCGTCGGCTGAGTTGAAGGTGGCGGCGGGGGAGGGGTTGGCTTTGCTG
CGTGAGTACTGGCGCCAGGTCCCTGTGGCCTCTCATGATGTATCGGCGGA
GGAGGAGGATTTGCTGGAAAGTATTGTGGATAGATTGCGGGACATGGCTA
GAGAGGGGAGTAAACGGATGAGTCGAAAAGATAAGAAAGCGCAGAGGGCG
TCGTTTCGTGAGGTATACGCGGCAGTGGCGGAGGGACAGCCTCCAGAGGA
GGTGATTAATTTTAGGACGCGGAGCTTTCGGTTGACAAGTTGGGTGAAGA
TGAAGCAGTTAGAATCGTTTCGAGACTGTCTACAGGGGGGCTTGTTGGCG
GCTTTTGGGACGAACCCGGTAATTCACGATGTGCTGGAAATCGACCCTGC
GAGCTTCGAGACGCCGTTGGAGAGGAGAATGGTTGATAAAAACAGCGAAT
TGGGAAAGTGGAGGACGACGACCCGCTCCAGGAATCGTCGGACAAGAGAG
AGTGCTAAGCATCATTTTACGGAGGATGGGGAGGATAGTTAGATGGGCAA
GAAAAGTGCGCGTGCCCTGGCCGCGGCAGGCAAAAAAGGAAAGGGCGCAG
GATTGACAAGTGACGATGAACGCGAAAGCGTTACCTCTGAGGCCTCATTC
CTCTCCCAAGAGGCTGTGGAGCATCCCGCTTCTGCGATCGTGGACGATTC
GGTCGCAGGTTCAAACAGTAGAGTCGCTTCTCCTGCTTATGAGAACGAGG
CGGATTTTGCTGAGGTGCTTGAAAAGCTGGCGGAGAAACGAACGTCGACC
CGCGAGACTGGCTTGAAGGAGTTGACTGCAGGGCTTCGCTCGTACGCATT
TGCCGATGCGGCGCAGGCAAACCGCGAAATAATCTTCTCGACTTTGATTA
GTCTGATCCGCCGGGGTGGGGAGAAGGAGGGTGTGTTGTGTGCTGAGGCC
TTGGGGTTGATGTTTTTGTTGATTGGACCGGAGGAAGACGAGATTTTCAT
GCAGATCCGCGGACCCTTGGAATATCTAGTGACGCGCGGGCAGCATGAAG
AGGTGAGGGTGGAGGCTGCACGAGCTTTGGCGATGGGGTCATTTATTTGT
AATACGGAGGAGGAGGTGACGTTGGCGAACCTGTCGTTTTTCCAAGGCTT
ATTTTCGGGTGAAAGCGAGGGAGAAAGGGCCTCCGAAGAGCTCAAGGCTG
CGGGCGTCGATTCTTGGGCACTTTTAGCGACTGTTGCACCTAATGGCTAC
CACACGCATGAATTAAGGGTTCAGTTGCTAGAGGAGCTGCTGGGACTGCT
GGATGCTTCGTCGGCTGAGTTGAAGGTGGCGGCGGGGGAGGGGTTGGCTT
TGCTGCGTGAGTACTGGCGCCAGGTCCCTGTGGCCTCTCATGATGTATCG
GCGGAGGAGGAGGATTTGCTGGAAAGTATTGTGGATAGATTGCGGGACAT
GGCTAGAGAGGGGAGTAAACGGATGAGTCGAAAAGATAAGAAAGCGCAGA
GGGCGTCGTTTCGTGAGGTATACGCGGCAGTGGCGGAGGGACAGCCTCCA
GAGGAGGTGATTAATTTTAGGACGCGGAGCTTTCGGTTGACAAGTTGGGT
GAAGATGAAGCAGTTAGAATCGTTTCGAGACTGTCTACAGGGGGGCTTGT
TGGCGGCTTTTGGGACGAACCCGGTAATTCACGATGTGCTGGAAATCGAC
CCTGCGAGCTTCGAGACGCCGTTGGAGAGGAGAATGGTTGATAAAAACAG
CGAATTGGGAAAGTGGAGGACGACGACCCGCTCCAGGAATCGTCGGACAA
GAGAGAGTGCTAAGCATCATTTTACGGAGGATGGGGAGGATAGTTAGATG
GGCAAGAAAA

Synonyms

Publications