jgi.p|Nanoce1779_2|587413, mRNA_4666 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587413
Unique NamemRNA_4666
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length435
Alignment locationscaffold_9:332248..333007 +

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Properties
Property NameValue
TranscriptId587499
TrackFilteredModels2
ProteinId587413
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:332248..333007 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587413gene_4666Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587413mRNA_4666-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4666CDS_4666Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4666 ID=mRNA_4666|Name=jgi.p|Nanoce1779_2|587413|organism=Nannochloropsis oceanica|type=mRNA|length=435bp
ACAGAAAGGTCTCGCATCCGCTCCTGCAATGGTTGACGTCGTTGACCGCC
CGCTGCCGCCTAGGGAGCCACGATTTCTTGCGGCCGAGGACACTTCCATC
AAGATAGAATGGGATGCGATTAGCACGTTAAACTATCGCATCCAGTATAA
GGAATACCTCCAGACCTGGGAAGAGGCCACATCGATTAATGTTCCCACTG
GACAGAACACCATGATTACGGCCCTGTCTGATCTGCAGCCTTGTGCAACC
TACTGCGTAAGAATTGTTGCGATAGGACAGAACAATGTGGAGAGCTTGGC
AGGCCCGGAGATCGTAATTGACACGGCAGCTGCAAATTGTACGCCGAGAA
CTAAAAAGGCATGTTGTATATGTTAGTGGCGCTCGTTGAATGAAAAGGAA
AAGTAATGCGCATAAAGCCTGTCATTGTGTGGCCC
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protein sequence of jgi.p|Nanoce1779_2|587413

>mRNA_4666-protein ID=mRNA_4666-protein|Name=jgi.p|Nanoce1779_2|587413|organism=Nannochloropsis oceanica|type=polypeptide|length=116bp
MVDVVDRPLPPREPRFLAAEDTSIKIEWDAISTLNYRIQYKEYLQTWEEA
TSINVPTGQNTMITALSDLQPCATYCVRIVAIGQNNVESLAGPEIVIDTA
AANCTPRTKKACCIC*
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mRNA from alignment at scaffold_9:332248..333007+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4666 ID=mRNA_4666|Name=jgi.p|Nanoce1779_2|587413|organism=Nannochloropsis oceanica|type=mRNA|length=760bp|location=Sequence derived from alignment at scaffold_9:332248..333007+ (Nannochloropsis oceanica)
ACAGAAAGGTCTCGCATCCGCTCCTGCAATGGTTGACGTCGTTGACCGCC
CGCTGCCGCCTAGGGAGCCACGATTTCTTGCGGCCGAGGACACTTCCATC
AAGATAGAATGGTAAGTGGTCGTGCCTCTTCCTTCCTTTTAAATTATTTC
TCCCTTTTCAAGGATCTCCTGTCTTTCTCATTCGAAAGGACAAGCTTGAC
AGCGTCGTCTTAGGAGTAACGCTTGTCCTCCTGTGCGGCAATGGTCTTCC
TTCTATTCCCTTCTCGCCCACCATAAGAACTTTCGCTTCGCTTTTCAATC
AGTCCTTATACTTACACAAAGAATCCTCTATCGTAGGGATGCGATTAGCA
CGTTAAACTATCGCATCCAGTATAAGGAATACCTCCAGACCTGGGAAGAG
GCCACATCGATTAATGTTCCCACTGGACAGAACACCATGATTACGGCCCT
GTCTGATCTGCAGCCTTGTGCAACCTACTGCGTAAGAATTGTTGCGATAG
GACAGAACAATGTGGAGAGCTTGGCAGGCCCGGAGATCGTAATTGACACG
GCAGGTACGCTAACGCCGGGTTGGGCTTGAGAGGACTAGCTAGCCTACCC
AACGAGAAAAATTTTACTCAAGTTTCCCAATATAACATTCATAACACACA
TTAGCTGCAAATTGTACGCCGAGAACTAAAAAGGCATGTTGTATATGTTA
GTGGCGCTCGTTGAATGAAAAGGAAAAGTAATGCGCATAAAGCCTGTCAT
TGTGTGGCCC
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Coding sequence (CDS) from alignment at scaffold_9:332248..333007+

>mRNA_4666 ID=mRNA_4666|Name=jgi.p|Nanoce1779_2|587413|organism=Nannochloropsis oceanica|type=CDS|length=1044bp|location=Sequence derived from alignment at scaffold_9:332248..333007+ (Nannochloropsis oceanica)
ATGGTTGACGTCGTTGACCGCCCGCTGCCGCCTAGGGAGCCACGATTTCT
TGCGGCCGAGGACACTTCCATCAAGATAGAATGGGATGCGATTAGCACGT
TAAACTATCGCATCCAGTATAAGGAATACCTCCAGACCTGGGAAGAGGCC
ACATCGATTAATGTTCCCACTGGACAGAACACCATGATTACGGCCCTGTC
TGATCTGCAGCCTTGTGCAACCTACTGCGTAAGAATTGTTGCGATAGGAC
AGAACAATGTGGAGAGCTTGGCAGGCCCGGAGATCGTAATTGACACGGCA
GCTGCAAATTGTACGCCGAGAACTAAAAAGGCATGTTGTATATGTTAGAT
GGTTGACGTCGTTGACCGCCCGCTGCCGCCTAGGGAGCCACGATTTCTTG
CGGCCGAGGACACTTCCATCAAGATAGAATGGGATGCGATTAGCACGTTA
AACTATCGCATCCAGTATAAGGAATACCTCCAGACCTGGGAAGAGGCCAC
ATCGATTAATGTTCCCACTGGACAGAACACCATGATTACGGCCCTGTCTG
ATCTGCAGCCTTGTGCAACCTACTGCGTAAGAATTGTTGCGATAGGACAG
AACAATGTGGAGAGCTTGGCAGGCCCGGAGATCGTAATTGACACGGCAGC
TGCAAATTGTACGCCGAGAACTAAAAAGGCATGTTGTATATGTTAGATGG
TTGACGTCGTTGACCGCCCGCTGCCGCCTAGGGAGCCACGATTTCTTGCG
GCCGAGGACACTTCCATCAAGATAGAATGGGATGCGATTAGCACGTTAAA
CTATCGCATCCAGTATAAGGAATACCTCCAGACCTGGGAAGAGGCCACAT
CGATTAATGTTCCCACTGGACAGAACACCATGATTACGGCCCTGTCTGAT
CTGCAGCCTTGTGCAACCTACTGCGTAAGAATTGTTGCGATAGGACAGAA
CAATGTGGAGAGCTTGGCAGGCCCGGAGATCGTAATTGACACGGCAGCTG
CAAATTGTACGCCGAGAACTAAAAAGGCATGTTGTATATGTTAG
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Synonyms
Publications