jgi.p|Nanoce1779_2|587402, mRNA_4664 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|587402
Unique Name	mRNA_4664
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1577
Alignment location	scaffold_9:328076..329883 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	587488
Track	FilteredModels2
ProteinId	587402

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:328076..329883 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587402	gene_4664	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587402	mRNA_4664-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4664	CDS_4664	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:328076..329883+
coding sequence from alignment at scaffold_9:328076..329883+

mRNA sequence

>mRNA_4664 ID=mRNA_4664|Name=jgi.p|Nanoce1779_2|587402|organism=Nannochloropsis oceanica|type=mRNA|length=1577bp
CTCGCTTTTGGTTAACCGTAACTCACATTCTGTCTTATGTGAAAGCATAA
CACCTAGTGCACCATGCCGAGGGCACCTGGAATCAATTTTACCTCAACAG
CCGTTGTCGACAGCAGCAACAACAGGATTATTCCACTATAGCCCCTCCCG
TGAAACATTGCACGACCATTTCTCTAGCATGCAACACACTCCACCACTCC
ACCAATACGCAGACACACTCCACGTCGTACTTTTTCTGTTGAGCAAGCGC
TACTCCTCGGGGAGGAGCTGGCTGTTTCGGGGCCCTGTGAGCCCACTTGG
TGGGGACAGCATCATCATCGCCATCATCATCACCTGACCTGCCAAAATGC
TCTTTACGGAAAAGCAGCTAGCCAAGGGTACGGCCAGCCGGGTGGATGGG
ATTTCCCAGGAGGAGGAGGAGAACTACCGGCGCAAGACAAACGAGTTCGT
GGTGCAGCTGTGTCGGAAGCTGGATATGAACCCCATGAGCATGTGGAATG
CTTCCACCCTCACACACCGCTTCTTTACTTATGAGTCGTTCAAGCGCCGG
GACCGCTTGCTCGTAGGCGCCACGGCGGTCTTTCTGGGGGGCAAGATGGC
CGAGAACGCCCGGCGGCTGTTGGATGTGGTGGGACACTACCATGCGCTGC
GGCATAAGACGCCCAACCTGCCCCCGGAGAAGAGCAAACTCGTGCAGGAC
CTGAAGGAAGAGGTTCTTGCCCATGAGCGCCTTATGCTGCACGTCATTGG
CTTTAATCTCTATATCGAGATCCCCCGTGCCAAGTTTGGGGAACTGGGTG
GCAAAGTAAAAGCCCACGCACCCGAGGCATACGAAAAGCTTGTGCCGTGG
GCAGCGAATGTACTCAACGACCTGTACAGTAAGACCACCCTCTGCCTGCG
CTGCGAGGCCGCCGTCATTGCTCAGATCGCTTTGTACTTGGCCGTGCGCC
ACTTCACATTGCCAGAGCCCAAAATCGACTTGACAGCAGCAGGAGGGAGT
GAAGGAGGCGGAGATAAGGTCAAAAAGTCGCCGGGAACCTGGCGAGAAGT
CTTTGGGCTTGGAAACGACGCCCAGACATTTTGCCTGATCAAGCGCGCCA
TCGACGTGTACCGGGGCAACCACTTCGCCGCCTACCGTCCCCTGGTGCGC
AGAATAGACCTCGAGATAGCCGCCGCACTGGCTCTTGAGAAACGAGAGGA
CGTTGTTGGAGGGGGGATGCTGACAGCATCTCCCCCTCCGCCTCCACCAC
CATCCGCGCTACCCTCGGCGAAGCTTGACCGGTAGCATGCCCGGACCCGC
TTGCCTCCAGAATCAAAACTCGTCAAGAGATAATGCTGTCCGATAGGAAT
TAGACTCACAATCGCTGCACAGCCAGCCGCGCAGGCACCGCGCTTCTACA
TCATATAAATACGTAGACACAGATAGAAAAGGTCATATGTACAGAAGCAG
GCAGCACATGAAGCAAGGGTGGAATTCGACACACGGGGATGATGTTCTTT
TCTTTTGAGTCTCGCTATGGAGTTTTTAGTTGGGAAGGACGTGGTGGGCT
GGTGCGCGCGCGATTAAAGAGGAATTG

protein sequence of jgi.p|Nanoce1779_2|587402

>mRNA_4664-protein ID=mRNA_4664-protein|Name=jgi.p|Nanoce1779_2|587402|organism=Nannochloropsis oceanica|type=polypeptide|length=313bp
MLFTEKQLAKGTASRVDGISQEEEENYRRKTNEFVVQLCRKLDMNPMSMW
NASTLTHRFFTYESFKRRDRLLVGATAVFLGGKMAENARRLLDVVGHYHA
LRHKTPNLPPEKSKLVQDLKEEVLAHERLMLHVIGFNLYIEIPRAKFGEL
GGKVKAHAPEAYEKLVPWAANVLNDLYSKTTLCLRCEAAVIAQIALYLAV
RHFTLPEPKIDLTAAGGSEGGGDKVKKSPGTWREVFGLGNDAQTFCLIKR
AIDVYRGNHFAAYRPLVRRIDLEIAAALALEKREDVVGGGMLTASPPPPP
PPSALPSAKLDR*

mRNA from alignment at scaffold_9:328076..329883+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4664 ID=mRNA_4664|Name=jgi.p|Nanoce1779_2|587402|organism=Nannochloropsis oceanica|type=mRNA|length=1808bp|location=Sequence derived from alignment at scaffold_9:328076..329883+ (Nannochloropsis oceanica)
CTCGCTTTTGGTTAACCGTAACTCACATTCTGTCTTATGTGAAAGCATAA
CACCTAGTGCACCATGCCGAGGGCACCTGGAATCAATTTTACCTCAACAG
CCGTTGTCGACAGCAGCAACAACAGGATTATTCCACTATAGCCCCTCCCG
TGAAACATTGCACGACCATTTCTCTAGCATGCAACACACTCCACCACTCC
ACCAATACGCAGACACACTCCACGTCGTACTTTTTCTGTTGAGCAAGCGC
TACTCCTCGGGGAGGAGCTGGCTGTTTCGGGGCCCTGTGAGCCCACTTGG
TGGGGACAGCATCATCATCGCCATCATCATCACCTGACCTGCCAAAATGC
TCTTTACGGAAAAGCAGCTAGCCAAGGGTACGGCCAGCCGGGTGGATGGG
ATTTCCCAGGAGGAGGAGGAGAACTACCGGCGCAAGACAAACGAGTTCGT
GGTGCAGCTGTGTCGGAAGCTGGATATGAACCCCATGAGCATGTGGAATG
CTTCCACCCTCACACACCGCTTCTTTACTTATGAGTCGTTCAAGCGCCGG
GACCGCTTGCTCGTAGGCGCCACGGCGGTCTTTCTGGGGGGCAAGATGGC
CGAGAACGCCCGGCGGCTGTTGGATGTGGTGGGACACTACCATGCGCTGC
GGCATAAGACGCCCAACCTGCCCCCGGAGAAGAGCAAACTCGTGCAGGAC
CTGAAGGAAGAGGTTCTTGCCCATGAGCGCCTTATGCTGCACGTCATTGG
CTTTAATCTCTATATCGAGATCCCCCGTGCCAAGTTTGGGGAACTGGGTG
GCAAAGTAAAAGGTACGTGTGTGGGCTGGGATGATGTAGAGGAGGGCGGG
GGTGCGCGCACCGCCCTCGGCCTCGTCAGCTTACTCTTTGTCCACTGCCA
TACTCCGTACAGCCCACGCACCCGAGGCATACGAAAAGCTTGTGCCGTGG
GCAGCGAATGTACTCAACGACCTGTACAGTAAGACCACCCTCTGCCTGCG
CTGCGAGGCCGCCGTCATTGCTCAGATCGCTTTGTACTTGGCCGTGCGCC
ACTTCACATTGCCAGAGCCCAAAATCGACTTGACAGCAGCAGGAGGGAGT
GAAGGAGGCGGAGATAAGGTCAAAAAGTCGCCGGGAACCTGGCGAGAAGT
CTTTGGGCTTGGAAACGACGCCCAGACATTTTGTGAGTGTTCACCATACG
GCAGTAGTCGGAGAGAATTGAGAAAGGGATAGCGGGTTTATAATCCCTTA
AATGGTCCCCTTACCTCTCTTTCCTTTTTTGATGCTTCTTTTGTCCATCT
TCTTCCTTTGCAGGCCTGATCAAGCGCGCCATCGACGTGTACCGGGGCAA
CCACTTCGCCGCCTACCGTCCCCTGGTGCGCAGAATAGACCTCGAGATAG
CCGCCGCACTGGCTCTTGAGAAACGAGAGGACGTTGTTGGAGGGGGGATG
CTGACAGCATCTCCCCCTCCGCCTCCACCACCATCCGCGCTACCCTCGGC
GAAGCTTGACCGGTAGCATGCCCGGACCCGCTTGCCTCCAGAATCAAAAC
TCGTCAAGAGATAATGCTGTCCGATAGGAATTAGACTCACAATCGCTGCA
CAGCCAGCCGCGCAGGCACCGCGCTTCTACATCATATAAATACGTAGACA
CAGATAGAAAAGGTCATATGTACAGAAGCAGGCAGCACATGAAGCAAGGG
TGGAATTCGACACACGGGGATGATGTTCTTTTCTTTTGAGTCTCGCTATG
GAGTTTTTAGTTGGGAAGGACGTGGTGGGCTGGTGCGCGCGCGATTAAAG
AGGAATTG

Coding sequence (CDS) from alignment at scaffold_9:328076..329883+

>mRNA_4664 ID=mRNA_4664|Name=jgi.p|Nanoce1779_2|587402|organism=Nannochloropsis oceanica|type=CDS|length=2817bp|location=Sequence derived from alignment at scaffold_9:328076..329883+ (Nannochloropsis oceanica)
ATGCTCTTTACGGAAAAGCAGCTAGCCAAGGGTACGGCCAGCCGGGTGGA
TGGGATTTCCCAGGAGGAGGAGGAGAACTACCGGCGCAAGACAAACGAGT
TCGTGGTGCAGCTGTGTCGGAAGCTGGATATGAACCCCATGAGCATGTGG
AATGCTTCCACCCTCACACACCGCTTCTTTACTTATGAGTCGTTCAAGCG
CCGGGACCGCTTGCTCGTAGGCGCCACGGCGGTCTTTCTGGGGGGCAAGA
TGGCCGAGAACGCCCGGCGGCTGTTGGATGTGGTGGGACACTACCATGCG
CTGCGGCATAAGACGCCCAACCTGCCCCCGGAGAAGAGCAAACTCGTGCA
GGACCTGAAGGAAGAGGTTCTTGCCCATGAGCGCCTTATGCTGCACGTCA
TTGGCTTTAATCTCTATATCGAGATCCCCCGTGCCAAGTTTGGGGAACTG
GGTGGCAAAGTAAAAGCCCACGCACCCGAGGCATACGAAAAGCTTGTGCC
GTGGGCAGCGAATGTACTCAACGACCTGTACAGTAAGACCACCCTCTGCC
TGCGCTGCGAGGCCGCCGTCATTGCTCAGATCGCTTTGTACTTGGCCGTG
CGCCACTTCACATTGCCAGAGCCCAAAATCGACTTGACAGCAGCAGGAGG
GAGTGAAGGAGGCGGAGATAAGGTCAAAAAGTCGCCGGGAACCTGGCGAG
AAGTCTTTGGGCTTGGAAACGACGCCCAGACATTTTGCCTGATCAAGCGC
GCCATCGACGTGTACCGGGGCAACCACTTCGCCGCCTACCGTCCCCTGGT
GCGCAGAATAGACCTCGAGATAGCCGCCGCACTGGCTCTTGAGAAACGAG
AGGACGTTGTTGGAGGGGGGATGCTGACAGCATCTCCCCCTCCGCCTCCA
CCACCATCCGCGCTACCCTCGGCGAAGCTTGACCGGTAGATGCTCTTTAC
GGAAAAGCAGCTAGCCAAGGGTACGGCCAGCCGGGTGGATGGGATTTCCC
AGGAGGAGGAGGAGAACTACCGGCGCAAGACAAACGAGTTCGTGGTGCAG
CTGTGTCGGAAGCTGGATATGAACCCCATGAGCATGTGGAATGCTTCCAC
CCTCACACACCGCTTCTTTACTTATGAGTCGTTCAAGCGCCGGGACCGCT
TGCTCGTAGGCGCCACGGCGGTCTTTCTGGGGGGCAAGATGGCCGAGAAC
GCCCGGCGGCTGTTGGATGTGGTGGGACACTACCATGCGCTGCGGCATAA
GACGCCCAACCTGCCCCCGGAGAAGAGCAAACTCGTGCAGGACCTGAAGG
AAGAGGTTCTTGCCCATGAGCGCCTTATGCTGCACGTCATTGGCTTTAAT
CTCTATATCGAGATCCCCCGTGCCAAGTTTGGGGAACTGGGTGGCAAAGT
AAAAGCCCACGCACCCGAGGCATACGAAAAGCTTGTGCCGTGGGCAGCGA
ATGTACTCAACGACCTGTACAGTAAGACCACCCTCTGCCTGCGCTGCGAG
GCCGCCGTCATTGCTCAGATCGCTTTGTACTTGGCCGTGCGCCACTTCAC
ATTGCCAGAGCCCAAAATCGACTTGACAGCAGCAGGAGGGAGTGAAGGAG
GCGGAGATAAGGTCAAAAAGTCGCCGGGAACCTGGCGAGAAGTCTTTGGG
CTTGGAAACGACGCCCAGACATTTTGCCTGATCAAGCGCGCCATCGACGT
GTACCGGGGCAACCACTTCGCCGCCTACCGTCCCCTGGTGCGCAGAATAG
ACCTCGAGATAGCCGCCGCACTGGCTCTTGAGAAACGAGAGGACGTTGTT
GGAGGGGGGATGCTGACAGCATCTCCCCCTCCGCCTCCACCACCATCCGC
GCTACCCTCGGCGAAGCTTGACCGGTAGATGCTCTTTACGGAAAAGCAGC
TAGCCAAGGGTACGGCCAGCCGGGTGGATGGGATTTCCCAGGAGGAGGAG
GAGAACTACCGGCGCAAGACAAACGAGTTCGTGGTGCAGCTGTGTCGGAA
GCTGGATATGAACCCCATGAGCATGTGGAATGCTTCCACCCTCACACACC
GCTTCTTTACTTATGAGTCGTTCAAGCGCCGGGACCGCTTGCTCGTAGGC
GCCACGGCGGTCTTTCTGGGGGGCAAGATGGCCGAGAACGCCCGGCGGCT
GTTGGATGTGGTGGGACACTACCATGCGCTGCGGCATAAGACGCCCAACC
TGCCCCCGGAGAAGAGCAAACTCGTGCAGGACCTGAAGGAAGAGGTTCTT
GCCCATGAGCGCCTTATGCTGCACGTCATTGGCTTTAATCTCTATATCGA
GATCCCCCGTGCCAAGTTTGGGGAACTGGGTGGCAAAGTAAAAGCCCACG
CACCCGAGGCATACGAAAAGCTTGTGCCGTGGGCAGCGAATGTACTCAAC
GACCTGTACAGTAAGACCACCCTCTGCCTGCGCTGCGAGGCCGCCGTCAT
TGCTCAGATCGCTTTGTACTTGGCCGTGCGCCACTTCACATTGCCAGAGC
CCAAAATCGACTTGACAGCAGCAGGAGGGAGTGAAGGAGGCGGAGATAAG
GTCAAAAAGTCGCCGGGAACCTGGCGAGAAGTCTTTGGGCTTGGAAACGA
CGCCCAGACATTTTGCCTGATCAAGCGCGCCATCGACGTGTACCGGGGCA
ACCACTTCGCCGCCTACCGTCCCCTGGTGCGCAGAATAGACCTCGAGATA
GCCGCCGCACTGGCTCTTGAGAAACGAGAGGACGTTGTTGGAGGGGGGAT
GCTGACAGCATCTCCCCCTCCGCCTCCACCACCATCCGCGCTACCCTCGG
CGAAGCTTGACCGGTAG

Synonyms

Publications