jgi.p|Nanoce1779_2|587398, mRNA_4663 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|587398
Unique Name	mRNA_4663
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1181
Alignment location	scaffold_9:326375..328075 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	587484
Track	FilteredModels2
ProteinId	587398

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:326375..328075 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587398	gene_4663	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587398	mRNA_4663-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4663	CDS_4663	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:326375..328075+
coding sequence from alignment at scaffold_9:326375..328075+

mRNA sequence

>mRNA_4663 ID=mRNA_4663|Name=jgi.p|Nanoce1779_2|587398|organism=Nannochloropsis oceanica|type=mRNA|length=1181bp
AACAGGGGCGCCAAGCCCTTAAGCAGGCAACAGTAGGTCCAACACTCAAG
CGTCTCTTCTTAGGCAAAAGCCTGTTGAGCATCATCACCAATTGCCCGTC
CCCGAAGGCATTAGCTAGACCAGGATCATGTCGGGCGCCATCGTTGCCCC
CACACGCATGGCGCTGACCATGTACAAGACCAAACGCATCGGTGCCAAGA
AGGGCTACGAGCTGCTTAAGAAGAAATCGGATGCTTTAAAGGTGCGCTTT
CGCGACATAATGAAGGACATTGCCCGCACCAAGAGCAACATGGCGGATCA
GGGTTCGAGTGCCTTCTTTTCCTTGACGCAGGCGCAGTACGCTGCAGGAG
ACTTCCGACAGCAGGTGTTGCAAGGCAGCCTGACAGCCTCGGTCCGCGTG
CACACTCACACGGACAACGTGGCGGGCGTGAAGCTGCCGGTCTTCCGACA
GTACGAGATTCAAAGTGAGGTCAAGAGCAAATCTGATCGGGACAACCTCG
GCCTGGCACAGGGCGGGCGGCAGATCAAGGCCTGTAGAGAGAAGTTTTCC
GTTTTCCTCACCAACCTCGTGCGCCTCGCCTCCCTCCAGACTTCCTTCAT
AACCCTCGACGAGGCCCTGAAGGTGACGAATCGCCGCGTGAACGCTTTGG
AGAACGTAACCATTCCCCGTATCGAGGCTATCTTGGCATATATCAATCGC
GAACTGGATGAACTGGAGCGTGAGGACTTTACGCGCCTCAAGAAGGTGCA
GGGCAGTAAGAAGGTGGCGCAGGCGTTGGCGGAAGCAGAGGAGGAGGCTA
AGCACAAAGCAGCTGCTGCGGCAGGCACCCCCAGCAGTGGCAGGGTCATT
CGCAAGCCAGGATCTACCAAGGACGTTACGGCACAGTATGATACAGCCGG
AGACAGCGACATTGTGTTTTAGACGAGTCAACCGGGATCGTGGGGATGAA
ATGGAAGCCGGATGGAGGCAGCCGGCCGTGGTCCCCGGCATTTAGCAAGG
CCAAAGAAGAAGACGTCGATATGATTGTTCACAACAAGGGCAGGAGCTGA
TTCTAGATGGGAAGACTTTCTGCATTTGTGCAGTCCTAAACATTTATTTG
TGCGTCAAATACTTATTGCAGACATGCTTGCCGATGGTACACCGCAACCA
AGGAAAGAAAAAAATGACAAATCGGACTGAC

protein sequence of jgi.p|Nanoce1779_2|587398

>mRNA_4663-protein ID=mRNA_4663-protein|Name=jgi.p|Nanoce1779_2|587398|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MSGAIVAPTRMALTMYKTKRIGAKKGYELLKKKSDALKVRFRDIMKDIAR
TKSNMADQGSSAFFSLTQAQYAAGDFRQQVLQGSLTASVRVHTHTDNVAG
VKLPVFRQYEIQSEVKSKSDRDNLGLAQGGRQIKACREKFSVFLTNLVRL
ASLQTSFITLDEALKVTNRRVNALENVTIPRIEAILAYINRELDELERED
FTRLKKVQGSKKVAQALAEAEEEAKHKAAAAAGTPSSGRVIRKPGSTKDV
TAQYDTAGDSDIVF*

mRNA from alignment at scaffold_9:326375..328075+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4663 ID=mRNA_4663|Name=jgi.p|Nanoce1779_2|587398|organism=Nannochloropsis oceanica|type=mRNA|length=1701bp|location=Sequence derived from alignment at scaffold_9:326375..328075+ (Nannochloropsis oceanica)
AACAGGGGCGCCAAGCCCTTAAGCAGGCAACAGTAGGTCCAACACTCAAG
CGTCTCTTCTTAGGCAAAAGCCTGTTGAGCATCATCACCAATTGCCCGTC
CCCGAAGGCATTAGCTAGACCAGGATCATGTCGGGCGCCATCGTTGCCCC
CACACGCATGGCGCTGACCATGTACAAGGTGAGAGACGTTGGTATACCGG
GCGTGGTCCCAGGCTACGTGAATAAATATGGTTCAAAACGGGTTCTGGAT
TTGCCTTGTCGTCTTCCCTTCCCGTCCCGCTTTATCTAATTCCCGCACTC
ATGCAAATTTCCCACACGCTCGCAGACCAAACGCATCGGTGCCAAGAAGG
GCTACGAGCTGCTTAAGAAGAAATCGGATGCTTTAAAGGTGCGCTTTCGC
GACATAATGAAGGACATTGCCCGCACCAAGAGCAACATGGCGGATCAGGT
GCGTGCGGTATAGGAGGCGAAGGAAATGAGGCGGATGGAGTCTATGGGCG
CATCTTTCTTGGTATTGCTTGCTTGAAGCTTTGTCCATTGATTATATGGC
AGTGCATGTCGTATCTTTTGTAAGGCAAGCAAGGTTGGCAGGGCGGCGAG
AGTCTTGTATTGGCTGCGCCATTACATCTTAGACTGTCACACACTGCTGC
CTATAAATATTTACCTTTTCGCTTGCACCCATCTCTCTTCCTTTCGCAGG
GTTCGAGTGCCTTCTTTTCCTTGACGCAGGCGCAGTACGCTGCAGGAGAC
TTCCGACAGCAGGTGTTGCAAGGCAGCCTGACAGCCTCGGTCCGCGTGCA
CACTCACACGGACAACGTGGCGGGCGTGAAGCTGCCGGTCTTCCGACAGT
ACGAGATTCAAAGTGAGGTCAAGAGCAAATCTGATCGGGACAACCTCGGC
CTGGCACAGGGCGGGCGGCAGATCAAGGCCTGTAGAGAGAAGTTTTCCGT
TTTCCTCACCAACCTCGTGCGCCTCGCCTCCCTCCAGACTTCCTTCATAA
CCCTCGACGAGGCCCTGAAGGTACGTCCAATCCTTTAATCGGTCATTTAC
TTCTAAATCTGTTTTCGATTCCCTTCCGTCGCCTTCCTGCCTCGACACGC
ACATTCTCCTCTCCTTACTCTGCATCCCCCATGCTCTCACAGGTGACGAA
TCGCCGCGTGAACGCTTTGGAGAACGTAACCATTCCCCGTATCGAGGCTA
TCTTGGCATATATCAATCGCGAACTGGATGAACTGGAGCGTGAGGACTTT
ACGCGCCTCAAGAAGGTGCAGGGCAGTAAGAAGGTGGCGCAGGCGTTGGC
GGAAGCAGAGGAGGAGGCTAAGCACAAAGCAGCTGCTGCGGCAGGCACCC
CCAGCAGTGGCAGGGTCATTCGCAAGCCAGGATCTACCAAGGACGTTACG
GCACAGTATGATACAGCCGGAGACAGCGACATTGTGTTTTAGACGAGTCA
ACCGGGATCGTGGGGATGAAATGGAAGCCGGATGGAGGCAGCCGGCCGTG
GTCCCCGGCATTTAGCAAGGCCAAAGAAGAAGACGTCGATATGATTGTTC
ACAACAAGGGCAGGAGCTGATTCTAGATGGGAAGACTTTCTGCATTTGTG
CAGTCCTAAACATTTATTTGTGCGTCAAATACTTATTGCAGACATGCTTG
CCGATGGTACACCGCAACCAAGGAAAGAAAAAAATGACAAATCGGACTGA
C

Coding sequence (CDS) from alignment at scaffold_9:326375..328075+

>mRNA_4663 ID=mRNA_4663|Name=jgi.p|Nanoce1779_2|587398|organism=Nannochloropsis oceanica|type=CDS|length=3180bp|location=Sequence derived from alignment at scaffold_9:326375..328075+ (Nannochloropsis oceanica)
ATGTCGGGCGCCATCGTTGCCCCCACACGCATGGCGCTGACCATGTACAA
GACCAAACGCATCGGTGCCAAGAAGGGCTACGAGCTGCTTAAGAAGAAAT
CGGATGCTTTAAAGGTGCGCTTTCGCGACATAATGAAGGACATTGCCCGC
ACCAAGAGCAACATGGCGGATCAGGGTTCGAGTGCCTTCTTTTCCTTGAC
GCAGGCGCAGTACGCTGCAGGAGACTTCCGACAGCAGGTGTTGCAAGGCA
GCCTGACAGCCTCGGTCCGCGTGCACACTCACACGGACAACGTGGCGGGC
GTGAAGCTGCCGGTCTTCCGACAGTACGAGATTCAAAGTGAGGTCAAGAG
CAAATCTGATCGGGACAACCTCGGCCTGGCACAGGGCGGGCGGCAGATCA
AGGCCTGTAGAGAGAAGTTTTCCGTTTTCCTCACCAACCTCGTGCGCCTC
GCCTCCCTCCAGACTTCCTTCATAACCCTCGACGAGGCCCTGAAGGTGAC
GAATCGCCGCGTGAACGCTTTGGAGAACGTAACCATTCCCCGTATCGAGG
CTATCTTGGCATATATCAATCGCGAACTGGATGAACTGGAGCGTGAGGAC
TTTACGCGCCTCAAGAAGGTGCAGGGCAGTAAGAAGGTGGCGCAGGCGTT
GGCGGAAGCAGAGGAGGAGGCTAAGCACAAAGCAGCTGCTGCGGCAGGCA
CCCCCAGCAGTGGCAGGGTCATTCGCAAGCCAGGATCTACCAAGGACGTT
ACGGCACAGTATGATACAGCCGGAGACAGCGACATTGTGTTTTAGATGTC
GGGCGCCATCGTTGCCCCCACACGCATGGCGCTGACCATGTACAAGACCA
AACGCATCGGTGCCAAGAAGGGCTACGAGCTGCTTAAGAAGAAATCGGAT
GCTTTAAAGGTGCGCTTTCGCGACATAATGAAGGACATTGCCCGCACCAA
GAGCAACATGGCGGATCAGGGTTCGAGTGCCTTCTTTTCCTTGACGCAGG
CGCAGTACGCTGCAGGAGACTTCCGACAGCAGGTGTTGCAAGGCAGCCTG
ACAGCCTCGGTCCGCGTGCACACTCACACGGACAACGTGGCGGGCGTGAA
GCTGCCGGTCTTCCGACAGTACGAGATTCAAAGTGAGGTCAAGAGCAAAT
CTGATCGGGACAACCTCGGCCTGGCACAGGGCGGGCGGCAGATCAAGGCC
TGTAGAGAGAAGTTTTCCGTTTTCCTCACCAACCTCGTGCGCCTCGCCTC
CCTCCAGACTTCCTTCATAACCCTCGACGAGGCCCTGAAGGTGACGAATC
GCCGCGTGAACGCTTTGGAGAACGTAACCATTCCCCGTATCGAGGCTATC
TTGGCATATATCAATCGCGAACTGGATGAACTGGAGCGTGAGGACTTTAC
GCGCCTCAAGAAGGTGCAGGGCAGTAAGAAGGTGGCGCAGGCGTTGGCGG
AAGCAGAGGAGGAGGCTAAGCACAAAGCAGCTGCTGCGGCAGGCACCCCC
AGCAGTGGCAGGGTCATTCGCAAGCCAGGATCTACCAAGGACGTTACGGC
ACAGTATGATACAGCCGGAGACAGCGACATTGTGTTTTAGATGTCGGGCG
CCATCGTTGCCCCCACACGCATGGCGCTGACCATGTACAAGACCAAACGC
ATCGGTGCCAAGAAGGGCTACGAGCTGCTTAAGAAGAAATCGGATGCTTT
AAAGGTGCGCTTTCGCGACATAATGAAGGACATTGCCCGCACCAAGAGCA
ACATGGCGGATCAGGGTTCGAGTGCCTTCTTTTCCTTGACGCAGGCGCAG
TACGCTGCAGGAGACTTCCGACAGCAGGTGTTGCAAGGCAGCCTGACAGC
CTCGGTCCGCGTGCACACTCACACGGACAACGTGGCGGGCGTGAAGCTGC
CGGTCTTCCGACAGTACGAGATTCAAAGTGAGGTCAAGAGCAAATCTGAT
CGGGACAACCTCGGCCTGGCACAGGGCGGGCGGCAGATCAAGGCCTGTAG
AGAGAAGTTTTCCGTTTTCCTCACCAACCTCGTGCGCCTCGCCTCCCTCC
AGACTTCCTTCATAACCCTCGACGAGGCCCTGAAGGTGACGAATCGCCGC
GTGAACGCTTTGGAGAACGTAACCATTCCCCGTATCGAGGCTATCTTGGC
ATATATCAATCGCGAACTGGATGAACTGGAGCGTGAGGACTTTACGCGCC
TCAAGAAGGTGCAGGGCAGTAAGAAGGTGGCGCAGGCGTTGGCGGAAGCA
GAGGAGGAGGCTAAGCACAAAGCAGCTGCTGCGGCAGGCACCCCCAGCAG
TGGCAGGGTCATTCGCAAGCCAGGATCTACCAAGGACGTTACGGCACAGT
ATGATACAGCCGGAGACAGCGACATTGTGTTTTAGATGTCGGGCGCCATC
GTTGCCCCCACACGCATGGCGCTGACCATGTACAAGACCAAACGCATCGG
TGCCAAGAAGGGCTACGAGCTGCTTAAGAAGAAATCGGATGCTTTAAAGG
TGCGCTTTCGCGACATAATGAAGGACATTGCCCGCACCAAGAGCAACATG
GCGGATCAGGGTTCGAGTGCCTTCTTTTCCTTGACGCAGGCGCAGTACGC
TGCAGGAGACTTCCGACAGCAGGTGTTGCAAGGCAGCCTGACAGCCTCGG
TCCGCGTGCACACTCACACGGACAACGTGGCGGGCGTGAAGCTGCCGGTC
TTCCGACAGTACGAGATTCAAAGTGAGGTCAAGAGCAAATCTGATCGGGA
CAACCTCGGCCTGGCACAGGGCGGGCGGCAGATCAAGGCCTGTAGAGAGA
AGTTTTCCGTTTTCCTCACCAACCTCGTGCGCCTCGCCTCCCTCCAGACT
TCCTTCATAACCCTCGACGAGGCCCTGAAGGTGACGAATCGCCGCGTGAA
CGCTTTGGAGAACGTAACCATTCCCCGTATCGAGGCTATCTTGGCATATA
TCAATCGCGAACTGGATGAACTGGAGCGTGAGGACTTTACGCGCCTCAAG
AAGGTGCAGGGCAGTAAGAAGGTGGCGCAGGCGTTGGCGGAAGCAGAGGA
GGAGGCTAAGCACAAAGCAGCTGCTGCGGCAGGCACCCCCAGCAGTGGCA
GGGTCATTCGCAAGCCAGGATCTACCAAGGACGTTACGGCACAGTATGAT
ACAGCCGGAGACAGCGACATTGTGTTTTAG

Synonyms

Publications