jgi.p|Nanoce1779_2|439042, mRNA_4661 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|439042
Unique NamemRNA_4661
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length729
Alignment locationscaffold_9:323543..324523 -

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Properties
Property NameValue
TranscriptId439128
TrackFilteredModels2
ProteinId439042
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:323543..324523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|439042gene_4661Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|439042mRNA_4661-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4661CDS_4661Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4661 ID=mRNA_4661|Name=jgi.p|Nanoce1779_2|439042|organism=Nannochloropsis oceanica|type=mRNA|length=729bp
CGAACATCATGTTCGTCGTTGTGACTACCGAACGTTGGTGGAGCTGCGTT
TTTTTACCATCCTGTCCATCCAAAGTAGAGCACGACGTGTGTGAGTGCAT
TTGTATGCAGACTAGCATGTCCATTTATACGCACCCTAACGTCGCCCTCA
CCGCCTAACCTTTATGACAGACATGCCGCTGACTTTACTTAGTTTTTGAT
CATAAGTATCTAAACCTTTTCCTCCCCGCACCACCACCACATGAGCGCAG
AGGCCAACGTGCTTTGAGCCCTTCACATTGAGCATACGCCTGAACTGTCA
GTCATCTACAAAGCCTTCAACGGACATCATGAACGCTGATGATGCGCAGT
CTATCTTCGTGCGTAACTTGCCATTTAGCGCCACGACTGGGGACTTGGAA
GAACTGTGCGGTGGTATTGGACCTGTGAAACGTGCATCCATCATCCAAAC
AGCGGACGGTGAGTCACGGGGCTTTGGATTCGTTAAATTTGCGATCCCTG
AAGATGCCGTGCGTGCGGCCGCCATTTTGGCCAGCACCGACTTTAAGGGA
CGCATTATCTCCGTGGAGTTGGCAGTAAAGCGTGGCCAGAAGCCTGCTCA
TGCGCCGCTGGTTTCAACGGCCAAACGAGGTAAGGGCAAGGACAGCAAAC
AAGCGGCTTCCTCCTTCTCTTCCTCCTCCTTGTCACCCTCAACGGAAAAG
GATGACAGAGAGGAAGGGGAGGACGACCG
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protein sequence of jgi.p|Nanoce1779_2|439042

>mRNA_4661-protein ID=mRNA_4661-protein|Name=jgi.p|Nanoce1779_2|439042|organism=Nannochloropsis oceanica|type=polypeptide|length=133bp
MNADDAQSIFVRNLPFSATTGDLEELCGGIGPVKRASIIQTADGESRGFG
FVKFAIPEDAVRAAAILASTDFKGRIISVELAVKRGQKPAHAPLVSTAKR
GKGKDSKQAASSFSSSSLSPSTEKDDREEGEDD
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mRNA from alignment at scaffold_9:323543..324523-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4661 ID=mRNA_4661|Name=jgi.p|Nanoce1779_2|439042|organism=Nannochloropsis oceanica|type=mRNA|length=981bp|location=Sequence derived from alignment at scaffold_9:323543..324523- (Nannochloropsis oceanica)
CGAACATCATGTTCGTCGTTGTGACTACCGAACGTTGGTGGAGCTGCGTT
TTTTTACCATCCTGTCCATCCAAAGTAGAGCACGACGTGTGTGAGTGCAT
TTGTATGCAGACTAGCATGTCCATTTATACGCACCCTAACGTCGCCCTCA
CCGCCTAACCTTTATGACAGACATGCCGCTGACTTTACTTAGTTTTTGAT
CATAAGTATCTAAACCTTTTCCTCCCCGCACCACCACCACATGAGCGCAG
AGGCCAACGTGCTTTGAGCCCTTCACATTGAGCATACGCCTGAACTGTCA
GTCATCTACAAAGCCTTCAACGGACATCATGAACGCTGATGATGCGCAGT
AAGTACCGACCCTCGACTGTAGCCAGTCAACCCCCCCTGGACCCATCCCA
GCCCCCCCTCTTCGCCTGAATGTCACTTGGGCTGTATTTCCTTTCCATTT
CCCTGGCATAGATACAAAATCCTGTCAAGCACAATTTGCTTTCGGCGTAA
ATATATTTTGTCAATTTCACATGGCTCTGCGTGTCTGTCCTAATTAATGA
CACCCCCTGTCCTCTCCGCCTTGATCTCCTCCCCCTCCTCCCCCAATCAG
GTCTATCTTCGTGCGTAACTTGCCATTTAGCGCCACGACTGGGGACTTGG
AAGAACTGTGCGGTGGTATTGGACCTGTGAAACGTGCATCCATCATCCAA
ACAGCGGACGGTGAGTCACGGGGCTTTGGATTCGTTAAATTTGCGATCCC
TGAAGATGCCGTGCGTGCGGCCGCCATTTTGGCCAGCACCGACTTTAAGG
GACGCATTATCTCCGTGGAGTTGGCAGTAAAGCGTGGCCAGAAGCCTGCT
CATGCGCCGCTGGTTTCAACGGCCAAACGAGGTAAGGGCAAGGACAGCAA
ACAAGCGGCTTCCTCCTTCTCTTCCTCCTCCTTGTCACCCTCAACGGAAA
AGGATGACAGAGAGGAAGGGGAGGACGACCG
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Coding sequence (CDS) from alignment at scaffold_9:323543..324523-

>mRNA_4661 ID=mRNA_4661|Name=jgi.p|Nanoce1779_2|439042|organism=Nannochloropsis oceanica|type=CDS|length=802bp|location=Sequence derived from alignment at scaffold_9:323543..324523- (Nannochloropsis oceanica)
GTCTATCTTCGTGCGTAACTTGCCATTTAGCGCCACGACTGGGGACTTGG
AAGAACTGTGCGGTGGTATTGGACCTGTGAAACGTGCATCCATCATCCAA
ACAGCGGACGGTGAGTCACGGGGCTTTGGATTCGTTAAATTTGCGATCCC
TGAAGATGCCGTGCGTGCGGCCGCCATTTTGGCCAGCACCGACTTTAAGG
GACGCATTATCTCCGTGGAGTTGGCAGTAAAGCGTGGCCAGAAGCCTGCT
CATGCGCCGCTGGTTTCAACGGCCAAACGAGGTAAGGGCAAGGACAGCAA
ACAAGCGGCTTCCTCCTTCTCTTCCTCCTCCTTGTCACCCTCAACGGAAA
AGGATGACAGAGAGGAAGGGGAGGACGACCGATGAACGCTGATGATGCGC
AGTCTATCTTCGTGCGTAACTTGCCATTTAGCGCCACGACTGGGGACTTG
GAAGAACTGTGCGGTGGTATTGGACCTGTGAAACGTGCATCCATCATCCA
AACAGCGGACGGTGAGTCACGGGGCTTTGGATTCGTTAAATTTGCGATCC
CTGAAGATGCCGTGCGTGCGGCCGCCATTTTGGCCAGCACCGACTTTAAG
GGACGCATTATCTCCGTGGAGTTGGCAGTAAAGCGTGGCCAGAAGCCTGC
TCATGCGCCGCTGGTTTCAACGGCCAAACGAGGTAAGGGCAAGGACAGCA
AACAAGCGGCTTCCTCCTTCTCTTCCTCCTCCTTGTCACCCTCAACGGAA
AAGGATGACAGAGAGGAAGGGGAGGACGACCGATGAACGCTGATGATGCG
CA
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Synonyms
Publications