jgi.p|Nanoce1779_2|577393, mRNA_466 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577393
Unique NamemRNA_466
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1359
Alignment locationscaffold_3:1133618..1134976 +

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Properties
Property NameValue
TranscriptId577479
TrackFilteredModels2
ProteinId577393
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1133618..1134976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577393gene_466Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577393mRNA_466-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_466CDS_466Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_466 ID=mRNA_466|Name=jgi.p|Nanoce1779_2|577393|organism=Nannochloropsis oceanica|type=mRNA|length=1359bp
ACTTGCCGACCTCCCGTCTTCTTGCTTTGCTTGCCTTTGGTTCCACCTCG
TCCGTCTCCCTCTCGCCATTCTCCTGTCCCCCTCACTCTGGTAAAATACA
GGGATGCGAAGCTGCATAACCACCTCGCTGCCTAGTCCACCCAGGCCATC
TCCACGTGCCCCAGCCGTCCACGGTCTTGCTGTTCTTCGCCACCTCAGCA
GCAATGCCCCGACTCCAACACAAATTATTCCAGAGACGGACCCGCAGCGA
AAGCAAGATGGCAGCAGTAACGAATTTCGCAAGAAAAAAAATCGACTTAC
GCATAACGCAGGCGTGGCGGGGAGGCAATTTCTGACGCATCCCGGCATAC
CTGCAGGGACAATGTTTGCTAGAGAAGAAATGGCAATAAAGAAACGCATG
ATCGATACGCGAGAAAGCGTGCAGAAGCATCTCTCCAAACGCTTTGGTGC
CGCGGATGAGCTTCTTGAGGAACAGGGCGAAGATGCTCAAAACCGTATGG
AACGGGGTCGGCGCACAGGCGTGGCATCACTGGTGGAGGAGAGAATTCAA
TTGAGCATGATTCGTGGGGAGTTTGCCAATTTGAAACACAAGGGGAAATT
GGAGCGGGAGAGGACGCCAGGCCTTGATCGCACGACTGATATGTTTATGG
ATGTGCTTAAGAGGAATGGTGTACTGCCAGAGTGGATCCAGCGACAAAAG
CGGTTGAATGGCATGACGGACTTGCTTCGACGACGGTTGGAGGTGGAGTA
TGCACGTGCCTGCATGGATGCCAACCCTCAGCTTGAGTTGGTGCAAGGAG
ACGTGCCCCTGGCCCGGACTCCCTCTCTTGCCAGCTTTTCGGCAAGGGTG
CATCGAATCAATTCCATAGCCGAGGACTGCGAGGTGATTAATAGAGAGCT
TTTGACGTATAATTTACAAGGTAGGGTGCAAGGGGCTGAAAGGTGGAATG
TGATGGAGGCGTGCTTTGTAGACGTTTAGTAAATCAATAAGGACATACTT
ACGCGAGTCAGTTATCATTTTGTATGCCTACACAGAACCCTTGTTTATTT
ATCTTACCTCCATTTCCCTATGAGAGCCAACCCTTCATGATCTCTGTCCT
ATAATCACAGTGCCAGCCCTCCACCTCCAACGCCTCAAGCTCCAACTCGA
TTCCTTAATCGCAGAGGCAACATTACATGTGCCCGACAGCTATCAAGAAG
CGCGAAAGCTATACCGAAACGCAGACAGAGAGGGCTTGCTGGGGGTGACT
GCGTTGATGGAGCATCGTCTCGACTTCTTCTCGGAAGACGGGTCCGTGTA
TCAGGGAGGGGGAGGAATGAAGTCCAGGACTTATTGGCTGGAAAAGGGAG
GGGTTGACG
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protein sequence of jgi.p|Nanoce1779_2|577393

>mRNA_466-protein ID=mRNA_466-protein|Name=jgi.p|Nanoce1779_2|577393|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp
MRSCITTSLPSPPRPSPRAPAVHGLAVLRHLSSNAPTPTQIIPETDPQRK
QDGSSNEFRKKKNRLTHNAGVAGRQFLTHPGIPAGTMFAREEMAIKKRMI
DTRESVQKHLSKRFGAADELLEEQGEDAQNRMERGRRTGVASLVEERIQL
SMIRGEFANLKHKGKLERERTPGLDRTTDMFMDVLKRNGVLPEWIQRQKR
LNGMTDLLRRRLEVEYARACMDANPQLELVQGDVPLARTPSLASFSARVH
RINSIAEDCEVINRELLTYNLQGRVQGAERWNVMEACFVDV*
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mRNA from alignment at scaffold_3:1133618..1134976+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_466 ID=mRNA_466|Name=jgi.p|Nanoce1779_2|577393|organism=Nannochloropsis oceanica|type=mRNA|length=1359bp|location=Sequence derived from alignment at scaffold_3:1133618..1134976+ (Nannochloropsis oceanica)
ACTTGCCGACCTCCCGTCTTCTTGCTTTGCTTGCCTTTGGTTCCACCTCG
TCCGTCTCCCTCTCGCCATTCTCCTGTCCCCCTCACTCTGGTAAAATACA
GGGATGCGAAGCTGCATAACCACCTCGCTGCCTAGTCCACCCAGGCCATC
TCCACGTGCCCCAGCCGTCCACGGTCTTGCTGTTCTTCGCCACCTCAGCA
GCAATGCCCCGACTCCAACACAAATTATTCCAGAGACGGACCCGCAGCGA
AAGCAAGATGGCAGCAGTAACGAATTTCGCAAGAAAAAAAATCGACTTAC
GCATAACGCAGGCGTGGCGGGGAGGCAATTTCTGACGCATCCCGGCATAC
CTGCAGGGACAATGTTTGCTAGAGAAGAAATGGCAATAAAGAAACGCATG
ATCGATACGCGAGAAAGCGTGCAGAAGCATCTCTCCAAACGCTTTGGTGC
CGCGGATGAGCTTCTTGAGGAACAGGGCGAAGATGCTCAAAACCGTATGG
AACGGGGTCGGCGCACAGGCGTGGCATCACTGGTGGAGGAGAGAATTCAA
TTGAGCATGATTCGTGGGGAGTTTGCCAATTTGAAACACAAGGGGAAATT
GGAGCGGGAGAGGACGCCAGGCCTTGATCGCACGACTGATATGTTTATGG
ATGTGCTTAAGAGGAATGGTGTACTGCCAGAGTGGATCCAGCGACAAAAG
CGGTTGAATGGCATGACGGACTTGCTTCGACGACGGTTGGAGGTGGAGTA
TGCACGTGCCTGCATGGATGCCAACCCTCAGCTTGAGTTGGTGCAAGGAG
ACGTGCCCCTGGCCCGGACTCCCTCTCTTGCCAGCTTTTCGGCAAGGGTG
CATCGAATCAATTCCATAGCCGAGGACTGCGAGGTGATTAATAGAGAGCT
TTTGACGTATAATTTACAAGGTAGGGTGCAAGGGGCTGAAAGGTGGAATG
TGATGGAGGCGTGCTTTGTAGACGTTTAGTAAATCAATAAGGACATACTT
ACGCGAGTCAGTTATCATTTTGTATGCCTACACAGAACCCTTGTTTATTT
ATCTTACCTCCATTTCCCTATGAGAGCCAACCCTTCATGATCTCTGTCCT
ATAATCACAGTGCCAGCCCTCCACCTCCAACGCCTCAAGCTCCAACTCGA
TTCCTTAATCGCAGAGGCAACATTACATGTGCCCGACAGCTATCAAGAAG
CGCGAAAGCTATACCGAAACGCAGACAGAGAGGGCTTGCTGGGGGTGACT
GCGTTGATGGAGCATCGTCTCGACTTCTTCTCGGAAGACGGGTCCGTGTA
TCAGGGAGGGGGAGGAATGAAGTCCAGGACTTATTGGCTGGAAAAGGGAG
GGGTTGACG
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Coding sequence (CDS) from alignment at scaffold_3:1133618..1134976+

>mRNA_466 ID=mRNA_466|Name=jgi.p|Nanoce1779_2|577393|organism=Nannochloropsis oceanica|type=CDS|length=876bp|location=Sequence derived from alignment at scaffold_3:1133618..1134976+ (Nannochloropsis oceanica)
ATGCGAAGCTGCATAACCACCTCGCTGCCTAGTCCACCCAGGCCATCTCC
ACGTGCCCCAGCCGTCCACGGTCTTGCTGTTCTTCGCCACCTCAGCAGCA
ATGCCCCGACTCCAACACAAATTATTCCAGAGACGGACCCGCAGCGAAAG
CAAGATGGCAGCAGTAACGAATTTCGCAAGAAAAAAAATCGACTTACGCA
TAACGCAGGCGTGGCGGGGAGGCAATTTCTGACGCATCCCGGCATACCTG
CAGGGACAATGTTTGCTAGAGAAGAAATGGCAATAAAGAAACGCATGATC
GATACGCGAGAAAGCGTGCAGAAGCATCTCTCCAAACGCTTTGGTGCCGC
GGATGAGCTTCTTGAGGAACAGGGCGAAGATGCTCAAAACCGTATGGAAC
GGGGTCGGCGCACAGGCGTGGCATCACTGGTGGAGGAGAGAATTCAATTG
AGCATGATTCGTGGGGAGTTTGCCAATTTGAAACACAAGGGGAAATTGGA
GCGGGAGAGGACGCCAGGCCTTGATCGCACGACTGATATGTTTATGGATG
TGCTTAAGAGGAATGGTGTACTGCCAGAGTGGATCCAGCGACAAAAGCGG
TTGAATGGCATGACGGACTTGCTTCGACGACGGTTGGAGGTGGAGTATGC
ACGTGCCTGCATGGATGCCAACCCTCAGCTTGAGTTGGTGCAAGGAGACG
TGCCCCTGGCCCGGACTCCCTCTCTTGCCAGCTTTTCGGCAAGGGTGCAT
CGAATCAATTCCATAGCCGAGGACTGCGAGGTGATTAATAGAGAGCTTTT
GACGTATAATTTACAAGGTAGGGTGCAAGGGGCTGAAAGGTGGAATGTGA
TGGAGGCGTGCTTTGTAGACGTTTAG
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Synonyms
Publications