jgi.p|Nanoce1779_2|587383, mRNA_4658 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|587383
Unique Name	mRNA_4658
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1682
Alignment location	scaffold_9:316736..318764 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	587469
Track	FilteredModels2
ProteinId	587383

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:316736..318764 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587383	gene_4658	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587383	mRNA_4658-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4658	CDS_4658	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:316736..318764+
coding sequence from alignment at scaffold_9:316736..318764+

mRNA sequence

>mRNA_4658 ID=mRNA_4658|Name=jgi.p|Nanoce1779_2|587383|organism=Nannochloropsis oceanica|type=mRNA|length=1682bp
AGGCAATTAAGCAACCAGCAGCAAGGCAATCTCTCGACGACAGCCATGCC
AACCGGCGGCTCCAGTTTCCTGCAGAGCTTGACGAAGCGCAAGAAGTCAC
CCGAGACGCTCGTCAAACTGGCAGTAGCATGCCTGCAAGAATTACCCGCC
TCGGAGGACGAGAGTTGGACTTGTCCCACGGCCGAGGGAGTTAAGCCACT
CACTGGGGCTTTGGGAGGGCTCAGCCTCGACGAGGCGGTAAACGCCAAGC
AGCCGCCAAAACATGTGGACAGCGACGACCTAAGCGTTTCGGGGCAGTCC
ATCTCGTCATCCACTGCCTCGAGTGGCAGCGACGCGGCCGTGTCTCGGCG
GCCCAGCTTTTTCTTGAGCGCTTTTGGCAAGAAGGAGTCCTCTTCTAATT
CGGCAGACCCTGGGTCGGCGGCGCCACACTCGCAATCCAGCCTGGGCTCC
AGTGGGGAAAGCGGGGCGGCCGACACAACAACCAAATCTGGGCGGCCGGG
TTCCCTTTTGGTGAGCAAGTTCTTCTCGGACTCAAGCCGGAAGCCTGCAC
CCCTGAGCCCGCATGGGTCGGGGCTATCGCAATCGGCGAGCCTGGGTCAG
ACGGGTGCGGAGGACGGCACGGTGATGGAGCGGCTGGCAAAGCGGCTGGC
GCAGATGAAGCTGGTGCTGTACGGGGACGGCGAGAAGGAGGTAGACAAAG
ACAAGTGTGTGGACCTGGCCGAAAATATTATCAAAGAAGGGCTCATGCCT
TTGCTGCTGGACCGATTCACGAATCTACCGTTCGAGGCCCGCAAGGACGC
GGCCCAGATTTTTAACAACATCGCCCGCCACAACCACGGAGGCTTCGCTG
ACCCCTACATCGCCGACCAGCACTTTTCAATCATGGAACAGCTCATCAAT
GGCTATGGCCACCCCGAGGTGGCTCTGAACTGTGGGTCGATGCTGCGGGA
GGCGGCCCGGCATGAAAAGGTGGCACGGCGGGTTCTGTTCTCGCCACACA
TCTGGGCATTTTTTGATACGTACGTGCACCTGCCAAACTTCGACGTGGCC
TCGGACTCGTTCGCCACGCTGCGCGACCTACTGACCAAACACAAGGCCGT
GGCAGCCGACTTCCTAGAGAAGGAGTACGACCTCGTCTTCAGCAAATATC
GCAGCCTGCTCGCCTCCGACAACTACGTCACTCGCCGCATGTCCCTCAAG
ATGCTGGGCGAGATCCTCCTCGATCGCTCGAATTTCAACGTCATGATGCG
ATATATCTCGTCGAAGGAGAATCTGAAGACGATCATGAATCTGCTGCGCG
ACAAGAGCGCATCCATCCAGTTCGAAGCCTTCCACGTGTTCAAGGTGTTT
GTGGCCAACCCCAAAAAGCCTCCAGAGATAGTCAAGATCCTTGTCACGAA
TCGGGACAAGCTCGTCAGCTACCTGACCCACTTCCACACTGACAAGGACG
ACGACCAGTTTCGCGAGGAAAAGGCTCTACTTGTCAATACGCTCGCCAAG
CTTGAGTACGAAGAGCCCCCCAAGTAGAAGGACAGCGGGACAAAGAGGAA
GAGCGAGCGCGACAAAAAGCAGGGTTGCGGACGAGAGGTGTCGCCACACA
GTAGCGACTCAAAGCAAGGTCAACGTCAGGATTTTGTAGGACCAAGAAAG
GAAAAAGAAATGTCTTTGAGCGGAATATGTAT

protein sequence of jgi.p|Nanoce1779_2|587383

>mRNA_4658-protein ID=mRNA_4658-protein|Name=jgi.p|Nanoce1779_2|587383|organism=Nannochloropsis oceanica|type=polypeptide|length=494bp
MPTGGSSFLQSLTKRKKSPETLVKLAVACLQELPASEDESWTCPTAEGVK
PLTGALGGLSLDEAVNAKQPPKHVDSDDLSVSGQSISSSTASSGSDAAVS
RRPSFFLSAFGKKESSSNSADPGSAAPHSQSSLGSSGESGAADTTTKSGR
PGSLLVSKFFSDSSRKPAPLSPHGSGLSQSASLGQTGAEDGTVMERLAKR
LAQMKLVLYGDGEKEVDKDKCVDLAENIIKEGLMPLLLDRFTNLPFEARK
DAAQIFNNIARHNHGGFADPYIADQHFSIMEQLINGYGHPEVALNCGSML
REAARHEKVARRVLFSPHIWAFFDTYVHLPNFDVASDSFATLRDLLTKHK
AVAADFLEKEYDLVFSKYRSLLASDNYVTRRMSLKMLGEILLDRSNFNVM
MRYISSKENLKTIMNLLRDKSASIQFEAFHVFKVFVANPKKPPEIVKILV
TNRDKLVSYLTHFHTDKDDDQFREEKALLVNTLAKLEYEEPPK*

mRNA from alignment at scaffold_9:316736..318764+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4658 ID=mRNA_4658|Name=jgi.p|Nanoce1779_2|587383|organism=Nannochloropsis oceanica|type=mRNA|length=2029bp|location=Sequence derived from alignment at scaffold_9:316736..318764+ (Nannochloropsis oceanica)
AGGCAATTAAGCAACCAGCAGCAAGGCAATCTCTCGACGACAGCCATGCC
AACCGGCGGCTCCAGTTTCCTGCAGAGCTTGACGAAGCGCAAGAAGTCAC
CCGAGACGCTCGTCAAACTGGCAGTAGCATGCCTGCAAGAATTACCCGCC
TCGGAGGACGAGAGTTGGACTTGTCCCACGGCCGAGGGAGTTAAGCCACT
CACTGGGGCTTTGGGAGGGCTCAGCCTCGACGAGGCGGTAAACGCCAAGC
AGCCGCCAAAACATGTGGACAGCGACGACCTAAGCGTTTCGGGGCAGTCC
ATCTCGTCATCCACTGCCTCGAGTGGCAGCGACGCGGCCGTGTCTCGGCG
GCCCAGCTTTTTCTTGAGCGCTTTTGGCAAGAAGGAGTCCTCTTCTAATT
CGGCAGACCCTGGGTCGGCGGCGCCACACTCGCAATCCAGCCTGGGCTCC
AGTGGGGAAAGCGGGGCGGCCGACACAACAACCAAATCTGGGCGGCCGGG
TTCCCTTTTGGTGAGCAAGTTCTTCTCGGACTCAAGCCGGAAGCCTGCAC
CCCTGAGCCCGCATGGGTCGGGGCTATCGCAATCGGCGAGCCTGGGTCAG
ACGGGTGCGGAGGACGGCACGGTGATGGAGCGGCTGGCAAAGCGGCTGGC
GCAGATGAAGCTGGTGCTGTACGGGGACGGCGAGAAGGAGGTAGACAAAG
ACAAGTGTGTGGACCTGGCCGAAAATATTATCAAAGAAGGGCTCATGCCT
TTGCTGCTGGACCGATTCACGAATCTACCGTTCGAGGCCCGCAAGGACGC
GGCCCAGATTTTTAACAACATCGCCCGCCACAACCACGGAGGCTTCGCTG
ACCCCTACATCGCCGACCAGCACTTTTCAATCATGGAACAGCTCATCAAT
GTACGCAGGCATCTGATTGGATAGGTTCAAAGGGAGACCTGTATAGGTTC
ATCGTGCTTACATCTCATCTCTCTTCTATCTCTCCACAGGGCTATGGCCA
CCCCGAGGTGGCTCTGAACTGTGGGTCGATGCTGCGGGAGGCGGCCCGGC
ATGAAAAGGTGGCACGGCGGGTTCTGTTCTCGCCACACATCTGGGCATTT
TTTGATACGTACGTGCACCTGCCAAACTTCGACGTGGCCTCGGACTCGTT
CGCCACGCTGCGCGACCTACTGACCAAACACAAGGCCGTGGCAGCCGACT
TCCTAGAGAAGGAGTACGACCTCGTCTTCAGCAAATATCGCAGCCTGCTC
GCCTCCGACAACTACGTCACTCGCCGCATGTCCCTCAAGATGCTGGGCGA
GATCCTCCTCGATCGCTCGAATTTCAACGTCATGTAAGTTGTTTGTTATC
GTGTTTTTTGGTACTTCAACTCAACTGCACTAGGTACTTGATTACCATCA
CTCGATCATCGACATGAACTAGACCGGAGGCGTTGACAGTCTTGATTTTG
GCGTGAGGGAGGTTGCTGTTGGAGCAGCAATTAAAGCTACATAATTCACA
CAGACACTACGTGCAGACAGAGGCATGACTTCTGGGAGCCGATGCCGATT
GTCTCACCACGACTCTCAATCTCCCTCTCCCTGTACTTCAGGATGCGATA
TATCTCGTCGAAGGAGAATCTGAAGACGATCATGAATCTGCTGCGCGACA
AGAGCGCATCCATCCAGTTCGAAGCCTTCCACGTGTTCAAGGTGTTTGTG
GCCAACCCCAAAAAGCCTCCAGAGATAGTCAAGATCCTTGTCACGAATCG
GGACAAGCTCGTCAGCTACCTGACCCACTTCCACACTGACAAGGACGACG
ACCAGTTTCGCGAGGAAAAGGCTCTACTTGTCAATACGCTCGCCAAGCTT
GAGTACGAAGAGCCCCCCAAGTAGAAGGACAGCGGGACAAAGAGGAAGAG
CGAGCGCGACAAAAAGCAGGGTTGCGGACGAGAGGTGTCGCCACACAGTA
GCGACTCAAAGCAAGGTCAACGTCAGGATTTTGTAGGACCAAGAAAGGAA
AAAGAAATGTCTTTGAGCGGAATATGTAT

Coding sequence (CDS) from alignment at scaffold_9:316736..318764+

>mRNA_4658 ID=mRNA_4658|Name=jgi.p|Nanoce1779_2|587383|organism=Nannochloropsis oceanica|type=CDS|length=4446bp|location=Sequence derived from alignment at scaffold_9:316736..318764+ (Nannochloropsis oceanica)
ATGCCAACCGGCGGCTCCAGTTTCCTGCAGAGCTTGACGAAGCGCAAGAA
GTCACCCGAGACGCTCGTCAAACTGGCAGTAGCATGCCTGCAAGAATTAC
CCGCCTCGGAGGACGAGAGTTGGACTTGTCCCACGGCCGAGGGAGTTAAG
CCACTCACTGGGGCTTTGGGAGGGCTCAGCCTCGACGAGGCGGTAAACGC
CAAGCAGCCGCCAAAACATGTGGACAGCGACGACCTAAGCGTTTCGGGGC
AGTCCATCTCGTCATCCACTGCCTCGAGTGGCAGCGACGCGGCCGTGTCT
CGGCGGCCCAGCTTTTTCTTGAGCGCTTTTGGCAAGAAGGAGTCCTCTTC
TAATTCGGCAGACCCTGGGTCGGCGGCGCCACACTCGCAATCCAGCCTGG
GCTCCAGTGGGGAAAGCGGGGCGGCCGACACAACAACCAAATCTGGGCGG
CCGGGTTCCCTTTTGGTGAGCAAGTTCTTCTCGGACTCAAGCCGGAAGCC
TGCACCCCTGAGCCCGCATGGGTCGGGGCTATCGCAATCGGCGAGCCTGG
GTCAGACGGGTGCGGAGGACGGCACGGTGATGGAGCGGCTGGCAAAGCGG
CTGGCGCAGATGAAGCTGGTGCTGTACGGGGACGGCGAGAAGGAGGTAGA
CAAAGACAAGTGTGTGGACCTGGCCGAAAATATTATCAAAGAAGGGCTCA
TGCCTTTGCTGCTGGACCGATTCACGAATCTACCGTTCGAGGCCCGCAAG
GACGCGGCCCAGATTTTTAACAACATCGCCCGCCACAACCACGGAGGCTT
CGCTGACCCCTACATCGCCGACCAGCACTTTTCAATCATGGAACAGCTCA
TCAATGGCTATGGCCACCCCGAGGTGGCTCTGAACTGTGGGTCGATGCTG
CGGGAGGCGGCCCGGCATGAAAAGGTGGCACGGCGGGTTCTGTTCTCGCC
ACACATCTGGGCATTTTTTGATACGTACGTGCACCTGCCAAACTTCGACG
TGGCCTCGGACTCGTTCGCCACGCTGCGCGACCTACTGACCAAACACAAG
GCCGTGGCAGCCGACTTCCTAGAGAAGGAGTACGACCTCGTCTTCAGCAA
ATATCGCAGCCTGCTCGCCTCCGACAACTACGTCACTCGCCGCATGTCCC
TCAAGATGCTGGGCGAGATCCTCCTCGATCGCTCGAATTTCAACGTCATG
ATGCGATATATCTCGTCGAAGGAGAATCTGAAGACGATCATGAATCTGCT
GCGCGACAAGAGCGCATCCATCCAGTTCGAAGCCTTCCACGTGTTCAAGG
TGTTTGTGGCCAACCCCAAAAAGCCTCCAGAGATAGTCAAGATCCTTGTC
ACGAATCGGGACAAGCTCGTCAGCTACCTGACCCACTTCCACACTGACAA
GGACGACGACCAGTTTCGCGAGGAAAAGGCTCTACTTGTCAATACGCTCG
CCAAGCTTGAGTACGAAGAGCCCCCCAAGTAGATGCCAACCGGCGGCTCC
AGTTTCCTGCAGAGCTTGACGAAGCGCAAGAAGTCACCCGAGACGCTCGT
CAAACTGGCAGTAGCATGCCTGCAAGAATTACCCGCCTCGGAGGACGAGA
GTTGGACTTGTCCCACGGCCGAGGGAGTTAAGCCACTCACTGGGGCTTTG
GGAGGGCTCAGCCTCGACGAGGCGGTAAACGCCAAGCAGCCGCCAAAACA
TGTGGACAGCGACGACCTAAGCGTTTCGGGGCAGTCCATCTCGTCATCCA
CTGCCTCGAGTGGCAGCGACGCGGCCGTGTCTCGGCGGCCCAGCTTTTTC
TTGAGCGCTTTTGGCAAGAAGGAGTCCTCTTCTAATTCGGCAGACCCTGG
GTCGGCGGCGCCACACTCGCAATCCAGCCTGGGCTCCAGTGGGGAAAGCG
GGGCGGCCGACACAACAACCAAATCTGGGCGGCCGGGTTCCCTTTTGGTG
AGCAAGTTCTTCTCGGACTCAAGCCGGAAGCCTGCACCCCTGAGCCCGCA
TGGGTCGGGGCTATCGCAATCGGCGAGCCTGGGTCAGACGGGTGCGGAGG
ACGGCACGGTGATGGAGCGGCTGGCAAAGCGGCTGGCGCAGATGAAGCTG
GTGCTGTACGGGGACGGCGAGAAGGAGGTAGACAAAGACAAGTGTGTGGA
CCTGGCCGAAAATATTATCAAAGAAGGGCTCATGCCTTTGCTGCTGGACC
GATTCACGAATCTACCGTTCGAGGCCCGCAAGGACGCGGCCCAGATTTTT
AACAACATCGCCCGCCACAACCACGGAGGCTTCGCTGACCCCTACATCGC
CGACCAGCACTTTTCAATCATGGAACAGCTCATCAATGGCTATGGCCACC
CCGAGGTGGCTCTGAACTGTGGGTCGATGCTGCGGGAGGCGGCCCGGCAT
GAAAAGGTGGCACGGCGGGTTCTGTTCTCGCCACACATCTGGGCATTTTT
TGATACGTACGTGCACCTGCCAAACTTCGACGTGGCCTCGGACTCGTTCG
CCACGCTGCGCGACCTACTGACCAAACACAAGGCCGTGGCAGCCGACTTC
CTAGAGAAGGAGTACGACCTCGTCTTCAGCAAATATCGCAGCCTGCTCGC
CTCCGACAACTACGTCACTCGCCGCATGTCCCTCAAGATGCTGGGCGAGA
TCCTCCTCGATCGCTCGAATTTCAACGTCATGATGCGATATATCTCGTCG
AAGGAGAATCTGAAGACGATCATGAATCTGCTGCGCGACAAGAGCGCATC
CATCCAGTTCGAAGCCTTCCACGTGTTCAAGGTGTTTGTGGCCAACCCCA
AAAAGCCTCCAGAGATAGTCAAGATCCTTGTCACGAATCGGGACAAGCTC
GTCAGCTACCTGACCCACTTCCACACTGACAAGGACGACGACCAGTTTCG
CGAGGAAAAGGCTCTACTTGTCAATACGCTCGCCAAGCTTGAGTACGAAG
AGCCCCCCAAGTAGATGCCAACCGGCGGCTCCAGTTTCCTGCAGAGCTTG
ACGAAGCGCAAGAAGTCACCCGAGACGCTCGTCAAACTGGCAGTAGCATG
CCTGCAAGAATTACCCGCCTCGGAGGACGAGAGTTGGACTTGTCCCACGG
CCGAGGGAGTTAAGCCACTCACTGGGGCTTTGGGAGGGCTCAGCCTCGAC
GAGGCGGTAAACGCCAAGCAGCCGCCAAAACATGTGGACAGCGACGACCT
AAGCGTTTCGGGGCAGTCCATCTCGTCATCCACTGCCTCGAGTGGCAGCG
ACGCGGCCGTGTCTCGGCGGCCCAGCTTTTTCTTGAGCGCTTTTGGCAAG
AAGGAGTCCTCTTCTAATTCGGCAGACCCTGGGTCGGCGGCGCCACACTC
GCAATCCAGCCTGGGCTCCAGTGGGGAAAGCGGGGCGGCCGACACAACAA
CCAAATCTGGGCGGCCGGGTTCCCTTTTGGTGAGCAAGTTCTTCTCGGAC
TCAAGCCGGAAGCCTGCACCCCTGAGCCCGCATGGGTCGGGGCTATCGCA
ATCGGCGAGCCTGGGTCAGACGGGTGCGGAGGACGGCACGGTGATGGAGC
GGCTGGCAAAGCGGCTGGCGCAGATGAAGCTGGTGCTGTACGGGGACGGC
GAGAAGGAGGTAGACAAAGACAAGTGTGTGGACCTGGCCGAAAATATTAT
CAAAGAAGGGCTCATGCCTTTGCTGCTGGACCGATTCACGAATCTACCGT
TCGAGGCCCGCAAGGACGCGGCCCAGATTTTTAACAACATCGCCCGCCAC
AACCACGGAGGCTTCGCTGACCCCTACATCGCCGACCAGCACTTTTCAAT
CATGGAACAGCTCATCAATGGCTATGGCCACCCCGAGGTGGCTCTGAACT
GTGGGTCGATGCTGCGGGAGGCGGCCCGGCATGAAAAGGTGGCACGGCGG
GTTCTGTTCTCGCCACACATCTGGGCATTTTTTGATACGTACGTGCACCT
GCCAAACTTCGACGTGGCCTCGGACTCGTTCGCCACGCTGCGCGACCTAC
TGACCAAACACAAGGCCGTGGCAGCCGACTTCCTAGAGAAGGAGTACGAC
CTCGTCTTCAGCAAATATCGCAGCCTGCTCGCCTCCGACAACTACGTCAC
TCGCCGCATGTCCCTCAAGATGCTGGGCGAGATCCTCCTCGATCGCTCGA
ATTTCAACGTCATGATGCGATATATCTCGTCGAAGGAGAATCTGAAGACG
ATCATGAATCTGCTGCGCGACAAGAGCGCATCCATCCAGTTCGAAGCCTT
CCACGTGTTCAAGGTGTTTGTGGCCAACCCCAAAAAGCCTCCAGAGATAG
TCAAGATCCTTGTCACGAATCGGGACAAGCTCGTCAGCTACCTGACCCAC
TTCCACACTGACAAGGACGACGACCAGTTTCGCGAGGAAAAGGCTCTACT
TGTCAATACGCTCGCCAAGCTTGAGTACGAAGAGCCCCCCAAGTAG

Synonyms

Publications