jgi.p|Nanoce1779_2|565457, mRNA_4657 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|565457
Unique NamemRNA_4657
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length606
Alignment locationscaffold_9:315174..316030 -

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Properties
Property NameValue
TranscriptId565543
TrackFilteredModels2
ProteinId565457
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:315174..316030 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565457gene_4657Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565457mRNA_4657-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4657CDS_4657Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4657 ID=mRNA_4657|Name=jgi.p|Nanoce1779_2|565457|organism=Nannochloropsis oceanica|type=mRNA|length=606bp
ATGTCAATCCTGGTCCTCGACTTGAAGAATAACTGGCATGTGGCCAACGT
TGAAAATCGCAGTGAGTCCTTGGAGGAACAGCAGCGAAGTGTGATCCTTC
ACGGCCCTTTGAGCTGGGAAGAGGTCGTGATTTTTGTTGAGGCGGCTCGA
CGGCCTCTGCCCATGCCTTCATTTTTGCTTTGGCACCCCTCTTTTCCGCA
TAACAATTGGAAACACTTTGAGGAGATTGTAGGCCTGCAGGACGGCATGG
ATCCGTACGGAGGAACGGCAAAGAAAAGCGACAGCCACCTTCACGTAGAT
AAGACTTGCGAGCTGAGGGAGGAAATGTTTATGAGAGGCGATGAAGAGGA
GGAAAGAGGCTTGGGTAAGGAGGAGGGCATGGATAGCATGGAGCCACTGG
CGGACGAAAAAGAAACGGCCAGTAAGGAACAAGACGAGAAAGCACTGGGA
TACGTCCCCCTGGTGGCAACCTCAGTGGCTATCATCCTGGAGCAATCTCG
GAATATCGCGCTCAAGCGGGGGGCTCTTCAAAATTTGGGGGTCGGGTATC
TCAATCGGGTCCAGATTTTTGTTTGTGAGAGACTCTTGGTCTTGACAGAA
GACTAA
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protein sequence of jgi.p|Nanoce1779_2|565457

>mRNA_4657-protein ID=mRNA_4657-protein|Name=jgi.p|Nanoce1779_2|565457|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MSILVLDLKNNWHVANVENRSESLEEQQRSVILHGPLSWEEVVIFVEAAR
RPLPMPSFLLWHPSFPHNNWKHFEEIVGLQDGMDPYGGTAKKSDSHLHVD
KTCELREEMFMRGDEEEERGLGKEEGMDSMEPLADEKETASKEQDEKALG
YVPLVATSVAIILEQSRNIALKRGALQNLGVGYLNRVQIFVCERLLVLTE
D*
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mRNA from alignment at scaffold_9:315174..316030-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4657 ID=mRNA_4657|Name=jgi.p|Nanoce1779_2|565457|organism=Nannochloropsis oceanica|type=mRNA|length=857bp|location=Sequence derived from alignment at scaffold_9:315174..316030- (Nannochloropsis oceanica)
ATGTCAATCCTGGTCCTCGACTTGAAGAATAACTGGCATGTGGCCAACGT
TGAAAATCGCAGTGAGTCCTTGGAGGAACAGCAGCGAAGTGTGATCCTTC
ACGGCCCTTTGAGCTGGGAAGAGGTCGTGATTTTTGTTGAGGCGGCTCGA
CGGCCTCTGCCCATGCCTTCATTTTTGCTTTGGCACCCCTCTTTTCCGCA
TAACAATTGGAAACACTTTGAGGAGGTAAGCACGCCGTCTTAGATGCAAA
AGCATAATCTTGTACAGCCCATTGGCTAAACTCTATCCGTTCCTCCTCCT
CTCTTACATAGATTGTAGGCCTGCAGGACGGCATGGATCCGTACGGAGGA
ACGGCAAAGAAAAGCGACAGCCACCTTCACGTAGATAAGACTTGCGAGCT
GAGGGAGGAAATGTTTATGAGAGGCGATGAAGAGGAGGAAAGAGGCTTGG
GTAAGGAGGAGGGCATGGATAGCATGGGTAAGGAGGAGGGCATGGATAGC
ATGGTGGCGGGGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAAAAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAG
AGATCAGAAACGATGCGATACCAGCAGCGGTGGTGTACGCAGAGCCACTG
GCGGACGAAAAAGAAACGGCCAGTAAGGAACAAGACGAGAAAGCACTGGG
ATACGTCCCCCTGGTGGCAACCTCAGTGGCTATCATCCTGGAGCAATCTC
GGAATATCGCGCTCAAGCGGGGGGCTCTTCAAAATTTGGGGGTCGGGTAT
CTCAATCGGGTCCAGATTTTTGTTTGTGAGAGACTCTTGGTCTTGACAGA
AGACTAA
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Coding sequence (CDS) from alignment at scaffold_9:315174..316030-

>mRNA_4657 ID=mRNA_4657|Name=jgi.p|Nanoce1779_2|565457|organism=Nannochloropsis oceanica|type=CDS|length=1818bp|location=Sequence derived from alignment at scaffold_9:315174..316030- (Nannochloropsis oceanica)
AGCCACTGGCGGACGAAAAAGAAACGGCCAGTAAGGAACAAGACGAGAAA
GCACTGGGATACGTCCCCCTGGTGGCAACCTCAGTGGCTATCATCCTGGA
GCAATCTCGGAATATCGCGCTCAAGCGGGGGGCTCTTCAAAATTTGGGGG
TCGGGTATCTCAATCGGGTCCAGATTTTTGTTTGTGAGAGACTCTTGGTC
TTGACAGAAGACTAAATTGTAGGCCTGCAGGACGGCATGGATCCGTACGG
AGGAACGGCAAAGAAAAGCGACAGCCACCTTCACGTAGATAAGACTTGCG
AGCTGAGGGAGGAAATGTTTATGAGAGGCGATGAAGAGGAGGAAAGAGGC
TTGGGTAAGGAGGAGGGCATGGATAGCATGGATGTCAATCCTGGTCCTCG
ACTTGAAGAATAACTGGCATGTGGCCAACGTTGAAAATCGCAGTGAGTCC
TTGGAGGAACAGCAGCGAAGTGTGATCCTTCACGGCCCTTTGAGCTGGGA
AGAGGTCGTGATTTTTGTTGAGGCGGCTCGACGGCCTCTGCCCATGCCTT
CATTTTTGCTTTGGCACCCCTCTTTTCCGCATAACAATTGGAAACACTTT
GAGGAGAGCCACTGGCGGACGAAAAAGAAACGGCCAGTAAGGAACAAGAC
GAGAAAGCACTGGGATACGTCCCCCTGGTGGCAACCTCAGTGGCTATCAT
CCTGGAGCAATCTCGGAATATCGCGCTCAAGCGGGGGGCTCTTCAAAATT
TGGGGGTCGGGTATCTCAATCGGGTCCAGATTTTTGTTTGTGAGAGACTC
TTGGTCTTGACAGAAGACTAAATTGTAGGCCTGCAGGACGGCATGGATCC
GTACGGAGGAACGGCAAAGAAAAGCGACAGCCACCTTCACGTAGATAAGA
CTTGCGAGCTGAGGGAGGAAATGTTTATGAGAGGCGATGAAGAGGAGGAA
AGAGGCTTGGGTAAGGAGGAGGGCATGGATAGCATGGATGTCAATCCTGG
TCCTCGACTTGAAGAATAACTGGCATGTGGCCAACGTTGAAAATCGCAGT
GAGTCCTTGGAGGAACAGCAGCGAAGTGTGATCCTTCACGGCCCTTTGAG
CTGGGAAGAGGTCGTGATTTTTGTTGAGGCGGCTCGACGGCCTCTGCCCA
TGCCTTCATTTTTGCTTTGGCACCCCTCTTTTCCGCATAACAATTGGAAA
CACTTTGAGGAGAGCCACTGGCGGACGAAAAAGAAACGGCCAGTAAGGAA
CAAGACGAGAAAGCACTGGGATACGTCCCCCTGGTGGCAACCTCAGTGGC
TATCATCCTGGAGCAATCTCGGAATATCGCGCTCAAGCGGGGGGCTCTTC
AAAATTTGGGGGTCGGGTATCTCAATCGGGTCCAGATTTTTGTTTGTGAG
AGACTCTTGGTCTTGACAGAAGACTAAATTGTAGGCCTGCAGGACGGCAT
GGATCCGTACGGAGGAACGGCAAAGAAAAGCGACAGCCACCTTCACGTAG
ATAAGACTTGCGAGCTGAGGGAGGAAATGTTTATGAGAGGCGATGAAGAG
GAGGAAAGAGGCTTGGGTAAGGAGGAGGGCATGGATAGCATGGATGTCAA
TCCTGGTCCTCGACTTGAAGAATAACTGGCATGTGGCCAACGTTGAAAAT
CGCAGTGAGTCCTTGGAGGAACAGCAGCGAAGTGTGATCCTTCACGGCCC
TTTGAGCTGGGAAGAGGTCGTGATTTTTGTTGAGGCGGCTCGACGGCCTC
TGCCCATGCCTTCATTTTTGCTTTGGCACCCCTCTTTTCCGCATAACAAT
TGGAAACACTTTGAGGAG
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Synonyms
Publications