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Properties
| Property Name | Value |
|---|
| TranscriptId | 625462 |
| Track | FilteredModels2 |
| ProteinId | 625376 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_9 | supercontig | scaffold_9:312579..315433 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4656 ID=mRNA_4656|Name=jgi.p|Nanoce1779_2|625376|organism=Nannochloropsis oceanica|type=mRNA|length=2614bp
AAGAGATCAGAAACGATGCGATACCAGCAGCGGTGGTGTACGCAGAGCCA
CTGGCGGACGAAAAAGAAACGGCCAGTAAGGAACAAGACGAGAAAGCACT
GGGATACGTCCCCCTGGTGGCAACCTCAGTGGCTATCATCCTGGAGCAAT
CTCGGAATATCGCGCTCAAGCGGGGGGCTCTTCAAAATTTGGGGGTCGGG
TATCTCAATCGGGTCCAGATTTTTGTTTGTGAGAGACTCTTGGTCTTGAC
AGAAGACTAACTACAACGGTCAAAATCCAAAAGAGAATGAGTGGAGGCAT
TAACCAATACCGTTTGCTCTTCTTGATGCAATAGTTCTGCTCTTGCATTT
TGAAGGAAAATTTTGCCGCTCGGGCACTCTCCATATGTCTCGTCATATCG
TCGGTTGGCAGAACGATTGCCGCGAATCCAAAGCATTGTCTTGTCCCTTC
CACCCTTCACTGCGCCTTCACATGCTAAAACCAAGGACGCAGGTAGGACA
CAGATGCTCTCATTAAGCCGGGGAGAATATAAACTGTGCTACAGCACCGC
CTGACTCGCTTGCTCATCATCCGTTATCACGCCTGATGCTCAGATTGTGC
CAGACGAAGTCATACGCACCATGCGCACATACACAAACACACACACACAA
ACGCACACACACGCTCATACAGGTCCCTGGCGTAGCGTATTTCTTTCCAC
AATACGCCATACCAGGCGGAGAAGGGAGCTGTTTTCCAAAGCTTCTCAAA
AGCACGGTCGTGGCTTCAAGAGGCAAGGAGCAAGGGAGAGACCCCTCCTA
ATCTGCAGCGCAGGCGCCACCCTCAATCGAGGGCATCCCTCAGCTTTCCA
CTTCGCAGGAAAAGAGGCTAGCAAGCTATACATCTAGAAGCTGAAAGCAT
AGCTTCGTAGGTATATGTACATGTCAGCATAGATCGAGTGCCTAGACGAA
CATGAGCACCGACACAACCAAGCTGGGCAAGGGGTCCTTCGCCACGGTGT
ACCGTGCCGTGCATGTGGAGACAAGTGAAGAGGCTGCCATCAAGGACATT
TCGCAGGAGCGGCTGACGCTGAAGCTGCAGGAGAACCTGGAGTCGGAGAT
ATCCATCCTCAAGAACCATGCGCACCGCAACATTGTGAGCCTGTACGACA
TCGAGCGCAGCGACAGACACATCTACATCATCCTCGAGTACTGCCGCGGC
GGCGACCTGCAGCGATTTATCAAGCATCAGCCGGGCGCACGCCTGGGGGA
GGCCACGGCCCAGCATTTCCTGCGCCACCTGGCAGCCGGCCTCAAGTTCC
TGAACGACCGCAACCTTGTTCATCGTGACATTAAGCCGCAGAACCTGCTG
CTGACCGAGAACTCCCCGTGGGCCGTCCTCAAAATCGCCGACTTTGGCTT
CGCACGCCACTTGGAGGGCAGCTCCATGGCCGAGACGCTGTGCGGGTCCC
CGCTGTACATGGCGCCCGAGATTCTGGGCCAGAACCAATACAACGCCAAG
GCCGACTTGTGGTCCGTGGGCGCCGTGCTCTTCGAGATGGTTGCTGGCCG
TCCGCCCTTTGCCGCACAAAATCAGGTGGAGCTGCTCAAAGTCATTAAAC
GGCCGCTGCAGATCCCTGGCGACGTGGACCTTTCTCGACCCTGCCTCGCC
CTCCTCCAGCGCCTGCTCAAGCGCGAGCCCCTGGAGCGCATCTCCTTCGA
GGATTTCTTCCGGAACGACTTTATTGATATGAAAAGACGAGACGACATCC
ACCACCAGGAGCAACAATAGCAGTAGCGGTAGCAGCAGGAACACTAGGGC
CGGGGGCCTGCCGCTGGGGCATGGGCATGGAAGGGAAAAGGAGAGAATCG
ACCACTCTCGTCCACCCTCTGTGCTTGCTGCGCAACCCTCTTCTTTTTCG
CCCCCTTCTTCCACTGTCGCCCCGTCCGACGTGGCCACGCCCACGAGGCG
GATGGCAATGGCGGAGTCGCCTTTTCTGGGCGTCGTCACGGGGACCTCCA
GTCCCTCTTTGGAGCAACCCGTGGCCCAGCGCCAGCGAGGGCATAATGTG
AGCAGGAAGATGATTGATGGCGATTTTGAAGGGCTCATCTTGGCGGGCAC
TGTCGCCACCGCTGCCACGACCGCGGTCAGTAGCCGCGCGCCTTTGGCGA
GACCCATCATGCTGCCCTTCCAGACCAACGGCAACAGCAACAGCATCAAC
CCTATGGCGGCCCCACCCACCCCGCGCGTGAACCCCTTTAAGCCACTGAC
CGCAAGTCCACCTGGAGCCGTGGCGCTTTCGGGCCACGGGCGCTCCACGT
CGGTGACCGCCTCCTCCATGACCCGGTGTTCTCCTTCGTCCTCCTCCTCG
TCCTCCTCCTCGTCCGCCTCGTCCTCGGGTGGCGTGGGAGGTGGGGGCCT
CCAGGGGGGCATAGATGGGGCTGAAAGTGTGGAGTCGGACGGTTTCGTGA
TTGTCAACGCCGGGGTGCCACACGACGTGCCCTCTTCAACAGACCAGGGC
CAACACCGCCGGAACTGCCATCGCCCCGCCGTCTCGCCCTCCTTCCACCA
TCACTATCAGCAGCAGCGGCAGCAGCAGCAACAGCAGCAAGAGGGATCGG
ATAATGGCGGGCCA back to topprotein sequence of jgi.p|Nanoce1779_2|625376 >mRNA_4656-protein ID=mRNA_4656-protein|Name=jgi.p|Nanoce1779_2|625376|organism=Nannochloropsis oceanica|type=polypeptide|length=273bp
MSTDTTKLGKGSFATVYRAVHVETSEEAAIKDISQERLTLKLQENLESEI
SILKNHAHRNIVSLYDIERSDRHIYIILEYCRGGDLQRFIKHQPGARLGE
ATAQHFLRHLAAGLKFLNDRNLVHRDIKPQNLLLTENSPWAVLKIADFGF
ARHLEGSSMAETLCGSPLYMAPEILGQNQYNAKADLWSVGAVLFEMVAGR
PPFAAQNQVELLKVIKRPLQIPGDVDLSRPCLALLQRLLKREPLERISFE
DFFRNDFIDMKRRDDIHHQEQQ* back to topmRNA from alignment at scaffold_9:312579..315433- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4656 ID=mRNA_4656|Name=jgi.p|Nanoce1779_2|625376|organism=Nannochloropsis oceanica|type=mRNA|length=2855bp|location=Sequence derived from alignment at scaffold_9:312579..315433- (Nannochloropsis oceanica)
AAGAGATCAGAAACGATGCGATACCAGCAGCGGTGGTGTACGCAGAGCCA
CTGGCGGACGAAAAAGAAACGGCCAGTAAGGAACAAGACGAGAAAGCACT
GGGATACGTCCCCCTGGTGGCAACCTCAGTGGCTATCATCCTGGAGCAAT
CTCGGAATATCGCGCTCAAGCGGGGGGCTCTTCAAAATTTGGGGGTCGGG
TATCTCAATCGGGTCCAGATTTTTGTTTGTGAGAGACTCTTGGTCTTGAC
AGAAGACTAACTACAACGGTCAAAATCCAAAAGAGAATGAGTGGAGGCAT
TAACCAATACCGTTTGCTCTTCTTGATGCAATAGTTCTGCTCTTGCATTT
TGAAGGAAAATTTTGCCGCTCGGGCACTCTCCATATGTCTCGTCATATCG
TCGGTTGGCAGAACGATTGCCGCGAATCCAAAGCATTGTCTTGTCCCTTC
CACCCTTCACTGCGCCTTCACATGCTAAAACCAAGGACGCAGGTAGGACA
CAGATGCTCTCATTAAGCCGGGGAGAATATAAACTGTGCTACAGCACCGC
CTGACTCGCTTGCTCATCATCCGTTATCACGCCTGATGCTCAGATTGTGC
CAGACGAAGTCATACGCACCATGCGCACATACACAAACACACACACACAA
ACGCACACACACGCTCATACAGGTCCCTGGCGTAGCGTATTTCTTTCCAC
AATACGCCATACCAGGCGGAGAAGGGAGCTGTTTTCCAAAGCTTCTCAAA
AGCACGGTCGTGGCTTCAAGAGGCAAGGAGCAAGGGAGAGACCCCTCCTA
ATCTGCAGCGCAGGCGCCACCCTCAATCGAGGGCATCCCTCAGCTTTCCA
CTTCGCAGGAAAAGAGGCTAGCAAGCTATACATCTAGGTACTTAGGAACA
CTCAATTTATCTTCGCGTACCGCTTTCGATTCATAATTAACACAAAGGAC
CAACCCACGGAAGCTAGAAGCTGAAAGCATAGCTTCGTAGGTATATGTAC
ATGTCAGCATAGATCGAGTGCCTAGACGAACATGAGCACCGACACAACCG
TCAGGAGCGTTTCCGTACTCGCTCCCTCTCCCTCCTACGCATCCAACCTC
ACCGCCACGTCCTCAACGCGGAATGGTCCCCCGAACTACCACCGACTGGA
GAAGCTGGGCAAGGGGTCCTTCGCCACGGTGTACCGTGCCGTGCATGTGG
AGACAAGTGAAGAGGCTGCCATCAAGGACATTTCGCAGGAGCGGCTGACG
CTGAAGCTGCAGGAGAACCTGGAGTCGGAGATATCCATCCTCAAGAACCA
TGCGCACCGCAACATTGTGAGCCTGTACGACATCGAGCGCAGCGACAGAC
ACATCTACATCATCCTCGAGTACTGCCGCGGCGGCGACCTGCAGCGATTT
ATCAAGCATCAGCCGGGCGCACGCCTGGGGGAGGCCACGGCCCAGCATTT
CCTGCGCCACCTGGCAGCCGGCCTCAAGTTCCTGAACGACCGCAACCTTG
TTCATCGTGACATTAAGCCGCAGAACCTGCTGCTGACCGAGAACTCCCCG
TGGGCCGTCCTCAAAATCGCCGACTTTGGCTTCGCACGCCACTTGGAGGG
CAGCTCCATGGCCGAGACGCTGTGCGGGTCCCCGCTGTACATGGCGCCCG
AGATTCTGGGCCAGAACCAATACAACGCCAAGGCCGACTTGTGGTCCGTG
GGCGCCGTGCTCTTCGAGATGGTTGCTGGCCGTCCGCCCTTTGCCGCACA
AAATCAGGTGGAGCTGCTCAAAGTCATTAAACGGCCGCTGCAGATCCCTG
GCGACGTGGACCTTTCTCGACCCTGCCTCGCCCTCCTCCAGCGCCTGCTC
AAGCGCGAGCCCCTGGAGCGCATCTCCTTCGAGGATTTCTTCCGGAACGA
CTTTATTGATATGAAAAGTAGCGGCATCCTCCTCGACGACCACGAGAACC
ATCACGTGGCCACCCTGATCCGGCAGGACGAGACGACATCCACCACCAGG
AGCAACAATAGCAGTAGCGGTAGCAGCAGGAACACTAGGGCCGGGGGCCT
GCCGCTGGGGCATGGGCATGGAAGGGAAAAGGAGAGAATCGACCACTCTC
GTCCACCCTCTGTGCTTGCTGCGCAACCCTCTTCTTTTTCGCCCCCTTCT
TCCACTGTCGCCCCGTCCGACGTGGCCACGCCCACGAGGCGGATGGCAAT
GGCGGAGTCGCCTTTTCTGGGCGTCGTCACGGGGACCTCCAGTCCCTCTT
TGGAGCAACCCGTGGCCCAGCGCCAGCGAGGGCATAATGTGAGCAGGAAG
ATGATTGATGGCGATTTTGAAGGGCTCATCTTGGCGGGCACTGTCGCCAC
CGCTGCCACGACCGCGGTCAGTAGCCGCGCGCCTTTGGCGAGACCCATCA
TGCTGCCCTTCCAGACCAACGGCAACAGCAACAGCATCAACCCTATGGCG
GCCCCACCCACCCCGCGCGTGAACCCCTTTAAGCCACTGACCGCAAGTCC
ACCTGGAGCCGTGGCGCTTTCGGGCCACGGGCGCTCCACGTCGGTGACCG
CCTCCTCCATGACCCGGTGTTCTCCTTCGTCCTCCTCCTCGTCCTCCTCC
TCGTCCGCCTCGTCCTCGGGTGGCGTGGGAGGTGGGGGCCTCCAGGGGGG
CATAGATGGGGCTGAAAGTGTGGAGTCGGACGGTTTCGTGATTGTCAACG
CCGGGGTGCCACACGACGTGCCCTCTTCAACAGACCAGGGCCAACACCGC
CGGAACTGCCATCGCCCCGCCGTCTCGCCCTCCTTCCACCATCACTATCA
GCAGCAGCGGCAGCAGCAGCAACAGCAGCAAGAGGGATCGGATAATGGCG
GGCCA back to topCoding sequence (CDS) from alignment at scaffold_9:312579..315433- >mRNA_4656 ID=mRNA_4656|Name=jgi.p|Nanoce1779_2|625376|organism=Nannochloropsis oceanica|type=CDS|length=2457bp|location=Sequence derived from alignment at scaffold_9:312579..315433- (Nannochloropsis oceanica)
GACGAGACGACATCCACCACCAGGAGCAACAATAGAAGCTGGGCAAGGGG
TCCTTCGCCACGGTGTACCGTGCCGTGCATGTGGAGACAAGTGAAGAGGC
TGCCATCAAGGACATTTCGCAGGAGCGGCTGACGCTGAAGCTGCAGGAGA
ACCTGGAGTCGGAGATATCCATCCTCAAGAACCATGCGCACCGCAACATT
GTGAGCCTGTACGACATCGAGCGCAGCGACAGACACATCTACATCATCCT
CGAGTACTGCCGCGGCGGCGACCTGCAGCGATTTATCAAGCATCAGCCGG
GCGCACGCCTGGGGGAGGCCACGGCCCAGCATTTCCTGCGCCACCTGGCA
GCCGGCCTCAAGTTCCTGAACGACCGCAACCTTGTTCATCGTGACATTAA
GCCGCAGAACCTGCTGCTGACCGAGAACTCCCCGTGGGCCGTCCTCAAAA
TCGCCGACTTTGGCTTCGCACGCCACTTGGAGGGCAGCTCCATGGCCGAG
ACGCTGTGCGGGTCCCCGCTGTACATGGCGCCCGAGATTCTGGGCCAGAA
CCAATACAACGCCAAGGCCGACTTGTGGTCCGTGGGCGCCGTGCTCTTCG
AGATGGTTGCTGGCCGTCCGCCCTTTGCCGCACAAAATCAGGTGGAGCTG
CTCAAAGTCATTAAACGGCCGCTGCAGATCCCTGGCGACGTGGACCTTTC
TCGACCCTGCCTCGCCCTCCTCCAGCGCCTGCTCAAGCGCGAGCCCCTGG
AGCGCATCTCCTTCGAGGATTTCTTCCGGAACGACTTTATTGATATGAAA
AATGAGCACCGACACAACCGACGAGACGACATCCACCACCAGGAGCAACA
ATAGAAGCTGGGCAAGGGGTCCTTCGCCACGGTGTACCGTGCCGTGCATG
TGGAGACAAGTGAAGAGGCTGCCATCAAGGACATTTCGCAGGAGCGGCTG
ACGCTGAAGCTGCAGGAGAACCTGGAGTCGGAGATATCCATCCTCAAGAA
CCATGCGCACCGCAACATTGTGAGCCTGTACGACATCGAGCGCAGCGACA
GACACATCTACATCATCCTCGAGTACTGCCGCGGCGGCGACCTGCAGCGA
TTTATCAAGCATCAGCCGGGCGCACGCCTGGGGGAGGCCACGGCCCAGCA
TTTCCTGCGCCACCTGGCAGCCGGCCTCAAGTTCCTGAACGACCGCAACC
TTGTTCATCGTGACATTAAGCCGCAGAACCTGCTGCTGACCGAGAACTCC
CCGTGGGCCGTCCTCAAAATCGCCGACTTTGGCTTCGCACGCCACTTGGA
GGGCAGCTCCATGGCCGAGACGCTGTGCGGGTCCCCGCTGTACATGGCGC
CCGAGATTCTGGGCCAGAACCAATACAACGCCAAGGCCGACTTGTGGTCC
GTGGGCGCCGTGCTCTTCGAGATGGTTGCTGGCCGTCCGCCCTTTGCCGC
ACAAAATCAGGTGGAGCTGCTCAAAGTCATTAAACGGCCGCTGCAGATCC
CTGGCGACGTGGACCTTTCTCGACCCTGCCTCGCCCTCCTCCAGCGCCTG
CTCAAGCGCGAGCCCCTGGAGCGCATCTCCTTCGAGGATTTCTTCCGGAA
CGACTTTATTGATATGAAAAATGAGCACCGACACAACCGACGAGACGACA
TCCACCACCAGGAGCAACAATAGAAGCTGGGCAAGGGGTCCTTCGCCACG
GTGTACCGTGCCGTGCATGTGGAGACAAGTGAAGAGGCTGCCATCAAGGA
CATTTCGCAGGAGCGGCTGACGCTGAAGCTGCAGGAGAACCTGGAGTCGG
AGATATCCATCCTCAAGAACCATGCGCACCGCAACATTGTGAGCCTGTAC
GACATCGAGCGCAGCGACAGACACATCTACATCATCCTCGAGTACTGCCG
CGGCGGCGACCTGCAGCGATTTATCAAGCATCAGCCGGGCGCACGCCTGG
GGGAGGCCACGGCCCAGCATTTCCTGCGCCACCTGGCAGCCGGCCTCAAG
TTCCTGAACGACCGCAACCTTGTTCATCGTGACATTAAGCCGCAGAACCT
GCTGCTGACCGAGAACTCCCCGTGGGCCGTCCTCAAAATCGCCGACTTTG
GCTTCGCACGCCACTTGGAGGGCAGCTCCATGGCCGAGACGCTGTGCGGG
TCCCCGCTGTACATGGCGCCCGAGATTCTGGGCCAGAACCAATACAACGC
CAAGGCCGACTTGTGGTCCGTGGGCGCCGTGCTCTTCGAGATGGTTGCTG
GCCGTCCGCCCTTTGCCGCACAAAATCAGGTGGAGCTGCTCAAAGTCATT
AAACGGCCGCTGCAGATCCCTGGCGACGTGGACCTTTCTCGACCCTGCCT
CGCCCTCCTCCAGCGCCTGCTCAAGCGCGAGCCCCTGGAGCGCATCTCCT
TCGAGGATTTCTTCCGGAACGACTTTATTGATATGAAAAATGAGCACCGA
CACAACC back to top
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