jgi.p|Nanoce1779_2|587375, mRNA_4655 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587375
Unique NamemRNA_4655
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1604
Alignment locationscaffold_9:310975..312578 -

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Properties
Property NameValue
TranscriptId587461
TrackFilteredModels2
ProteinId587375
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:310975..312578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587375gene_4655Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587375mRNA_4655-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4655CDS_4655Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4655 ID=mRNA_4655|Name=jgi.p|Nanoce1779_2|587375|organism=Nannochloropsis oceanica|type=mRNA|length=1604bp
CTTGCGGGACTGCACGGGACTTTGTACATGCAACAGCCTTTGGGCTGCGT
GGTGCAGGGGCAGACCCAGCAGCAGCAGCCGGTGGTGACGATCAAGTCGA
TGGACTCGCTGGAGGGGGCACTGCGAGTGCTGGCCTACGTAGAGAATTCC
ACACGTCATGCCATTCTCATTGCATCCCTCGGAGATGCCGCTGCCATTGC
CGGCCTCTCGCTACGGCGCGGGGGCTCAACGCCGGGCTTGGGGCTCCTGC
ACTCGGCCATGCACACCATCCTGTTGCAGGAGAACGGGCTCTGTCAGGAA
GGGGCCGACGACGAGGAGGAGGGTCGATCTTCAATCACCGGAACCAACAC
CTCCTCCATAAGCTCCTCCTCCTCTGAGTCCCAAGTGACGGCAGAGACCA
GGGCTGTCGCGCTTTTGGTGGATGCGCTAGTGCTGTACCTGAAGGCGCTG
TCGGTGGTGGGAACAGCTATCAAGGCTCTGCGCCAGGTTATCGACGTCAT
TCAGGCATACTGGAGCAGCCCGCATACTAGCAATTTGCGTTTGGCAGCCT
GGCAGCACCCGGGCTCACTTGACGGGCAGCTGGATGGGGATGCCAGCAAC
TGTGTCACCGGCAGCGGGAGTGGTAGTGGGGCTGGAGTGGCGTCGAGCGG
TTCGTTGCAGGAGCGTATCTCGTTGTTGCAAGGGTGGCTGGAGCTGCATT
TCAGCATCATCTTGGATCGAGCACAGGAGTGTCGCGTGCATTTGAATAAG
CGGCAGCAGCAACATCAGAAGGAGGCAGGGAGCATGGAAGGAAGCGAGTG
GACGGCGAGTCTGGGCCTTGTCACGCGGTCGGCCGAGGAGTTACTATACA
AGCACGCGCTCAGTCTGGCCAAGGAGGGGGCCGTCAAGGAGCTGCTCGGG
CAGTGGGGGCGGGGCCGTGAGCTCTACGCCCAGGCCCGCCTGATGATAGA
AGCCTTGCTGGCGGAGCCTCTCTTGCCCCTCGAGGATCAGCAAACCCTCG
AGATGTACCAGGCCGAATTCAGAGCCCGCGAGAACGAGTTGGCTGAGCGG
TGTCGGTGTATGGAAGAAGAGAAAGAAAAGGTGACGGCTACAAAGATCGC
CGTCGTCGCGGCTATCAATTGTCCTGAAAGTGGGCCGATGTGACATGAGC
AGGTGAAGGACCTCAAAATTGTACATAATGCTACACAAATACATATTCCA
ATCATAGAAAAAGACGATTTGCTCATAGGTCCTGAAGACAAGAACATTAT
GCGACGAGGTAAGTCTAAGGAATGATCGATTGATGGCAACTGCTATTCAT
CGACCGAGATCCATCGAAAAGCAGAATTGTCCGCTTGCTTGGCGCGATTG
TAGAATAGAGCGTTGACGAGTACATGATGGGATCAAGTAAGAGGACAAAA
AGTGCTTCCTGTACCTCCTCGTCCACATTTTGGTCCTTCGTCGGACTTAA
TCGGGGAAAAAGGAAGTAGAAAGTGCTAGAGTAAGGTGTAGAAGATCAAT
ACGCATACGTATGTGCATACATGTAATTGTGATTTTTGGGGGGCCATGTA
TAACAAAACAGGATGACCATACTATGATGAAAAAAACAAAGCGAAACACT
CCAA
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protein sequence of jgi.p|Nanoce1779_2|587375

>mRNA_4655-protein ID=mRNA_4655-protein|Name=jgi.p|Nanoce1779_2|587375|organism=Nannochloropsis oceanica|type=polypeptide|length=372bp
MQQPLGCVVQGQTQQQQPVVTIKSMDSLEGALRVLAYVENSTRHAILIAS
LGDAAAIAGLSLRRGGSTPGLGLLHSAMHTILLQENGLCQEGADDEEEGR
SSITGTNTSSISSSSSESQVTAETRAVALLVDALVLYLKALSVVGTAIKA
LRQVIDVIQAYWSSPHTSNLRLAAWQHPGSLDGQLDGDASNCVTGSGSGS
GAGVASSGSLQERISLLQGWLELHFSIILDRAQECRVHLNKRQQQHQKEA
GSMEGSEWTASLGLVTRSAEELLYKHALSLAKEGAVKELLGQWGRGRELY
AQARLMIEALLAEPLLPLEDQQTLEMYQAEFRARENELAERCRCMEEEKE
KVTATKIAVVAAINCPESGPM*
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mRNA from alignment at scaffold_9:310975..312578-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4655 ID=mRNA_4655|Name=jgi.p|Nanoce1779_2|587375|organism=Nannochloropsis oceanica|type=mRNA|length=1604bp|location=Sequence derived from alignment at scaffold_9:310975..312578- (Nannochloropsis oceanica)
CTTGCGGGACTGCACGGGACTTTGTACATGCAACAGCCTTTGGGCTGCGT
GGTGCAGGGGCAGACCCAGCAGCAGCAGCCGGTGGTGACGATCAAGTCGA
TGGACTCGCTGGAGGGGGCACTGCGAGTGCTGGCCTACGTAGAGAATTCC
ACACGTCATGCCATTCTCATTGCATCCCTCGGAGATGCCGCTGCCATTGC
CGGCCTCTCGCTACGGCGCGGGGGCTCAACGCCGGGCTTGGGGCTCCTGC
ACTCGGCCATGCACACCATCCTGTTGCAGGAGAACGGGCTCTGTCAGGAA
GGGGCCGACGACGAGGAGGAGGGTCGATCTTCAATCACCGGAACCAACAC
CTCCTCCATAAGCTCCTCCTCCTCTGAGTCCCAAGTGACGGCAGAGACCA
GGGCTGTCGCGCTTTTGGTGGATGCGCTAGTGCTGTACCTGAAGGCGCTG
TCGGTGGTGGGAACAGCTATCAAGGCTCTGCGCCAGGTTATCGACGTCAT
TCAGGCATACTGGAGCAGCCCGCATACTAGCAATTTGCGTTTGGCAGCCT
GGCAGCACCCGGGCTCACTTGACGGGCAGCTGGATGGGGATGCCAGCAAC
TGTGTCACCGGCAGCGGGAGTGGTAGTGGGGCTGGAGTGGCGTCGAGCGG
TTCGTTGCAGGAGCGTATCTCGTTGTTGCAAGGGTGGCTGGAGCTGCATT
TCAGCATCATCTTGGATCGAGCACAGGAGTGTCGCGTGCATTTGAATAAG
CGGCAGCAGCAACATCAGAAGGAGGCAGGGAGCATGGAAGGAAGCGAGTG
GACGGCGAGTCTGGGCCTTGTCACGCGGTCGGCCGAGGAGTTACTATACA
AGCACGCGCTCAGTCTGGCCAAGGAGGGGGCCGTCAAGGAGCTGCTCGGG
CAGTGGGGGCGGGGCCGTGAGCTCTACGCCCAGGCCCGCCTGATGATAGA
AGCCTTGCTGGCGGAGCCTCTCTTGCCCCTCGAGGATCAGCAAACCCTCG
AGATGTACCAGGCCGAATTCAGAGCCCGCGAGAACGAGTTGGCTGAGCGG
TGTCGGTGTATGGAAGAAGAGAAAGAAAAGGTGACGGCTACAAAGATCGC
CGTCGTCGCGGCTATCAATTGTCCTGAAAGTGGGCCGATGTGACATGAGC
AGGTGAAGGACCTCAAAATTGTACATAATGCTACACAAATACATATTCCA
ATCATAGAAAAAGACGATTTGCTCATAGGTCCTGAAGACAAGAACATTAT
GCGACGAGGTAAGTCTAAGGAATGATCGATTGATGGCAACTGCTATTCAT
CGACCGAGATCCATCGAAAAGCAGAATTGTCCGCTTGCTTGGCGCGATTG
TAGAATAGAGCGTTGACGAGTACATGATGGGATCAAGTAAGAGGACAAAA
AGTGCTTCCTGTACCTCCTCGTCCACATTTTGGTCCTTCGTCGGACTTAA
TCGGGGAAAAAGGAAGTAGAAAGTGCTAGAGTAAGGTGTAGAAGATCAAT
ACGCATACGTATGTGCATACATGTAATTGTGATTTTTGGGGGGCCATGTA
TAACAAAACAGGATGACCATACTATGATGAAAAAAACAAAGCGAAACACT
CCAA
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Coding sequence (CDS) from alignment at scaffold_9:310975..312578-

>mRNA_4655 ID=mRNA_4655|Name=jgi.p|Nanoce1779_2|587375|organism=Nannochloropsis oceanica|type=CDS|length=1116bp|location=Sequence derived from alignment at scaffold_9:310975..312578- (Nannochloropsis oceanica)
ATGCAACAGCCTTTGGGCTGCGTGGTGCAGGGGCAGACCCAGCAGCAGCA
GCCGGTGGTGACGATCAAGTCGATGGACTCGCTGGAGGGGGCACTGCGAG
TGCTGGCCTACGTAGAGAATTCCACACGTCATGCCATTCTCATTGCATCC
CTCGGAGATGCCGCTGCCATTGCCGGCCTCTCGCTACGGCGCGGGGGCTC
AACGCCGGGCTTGGGGCTCCTGCACTCGGCCATGCACACCATCCTGTTGC
AGGAGAACGGGCTCTGTCAGGAAGGGGCCGACGACGAGGAGGAGGGTCGA
TCTTCAATCACCGGAACCAACACCTCCTCCATAAGCTCCTCCTCCTCTGA
GTCCCAAGTGACGGCAGAGACCAGGGCTGTCGCGCTTTTGGTGGATGCGC
TAGTGCTGTACCTGAAGGCGCTGTCGGTGGTGGGAACAGCTATCAAGGCT
CTGCGCCAGGTTATCGACGTCATTCAGGCATACTGGAGCAGCCCGCATAC
TAGCAATTTGCGTTTGGCAGCCTGGCAGCACCCGGGCTCACTTGACGGGC
AGCTGGATGGGGATGCCAGCAACTGTGTCACCGGCAGCGGGAGTGGTAGT
GGGGCTGGAGTGGCGTCGAGCGGTTCGTTGCAGGAGCGTATCTCGTTGTT
GCAAGGGTGGCTGGAGCTGCATTTCAGCATCATCTTGGATCGAGCACAGG
AGTGTCGCGTGCATTTGAATAAGCGGCAGCAGCAACATCAGAAGGAGGCA
GGGAGCATGGAAGGAAGCGAGTGGACGGCGAGTCTGGGCCTTGTCACGCG
GTCGGCCGAGGAGTTACTATACAAGCACGCGCTCAGTCTGGCCAAGGAGG
GGGCCGTCAAGGAGCTGCTCGGGCAGTGGGGGCGGGGCCGTGAGCTCTAC
GCCCAGGCCCGCCTGATGATAGAAGCCTTGCTGGCGGAGCCTCTCTTGCC
CCTCGAGGATCAGCAAACCCTCGAGATGTACCAGGCCGAATTCAGAGCCC
GCGAGAACGAGTTGGCTGAGCGGTGTCGGTGTATGGAAGAAGAGAAAGAA
AAGGTGACGGCTACAAAGATCGCCGTCGTCGCGGCTATCAATTGTCCTGA
AAGTGGGCCGATGTGA
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Synonyms
Publications