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Properties
| Property Name | Value |
|---|
| TranscriptId | 587459 |
| Track | FilteredModels2 |
| ProteinId | 587373 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_9 | supercontig | scaffold_9:308974..310966 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4654 ID=mRNA_4654|Name=jgi.p|Nanoce1779_2|587373|organism=Nannochloropsis oceanica|type=mRNA|length=1621bp
ACAGGAGGACGCGATAGTCACCATGGCGACCAATGATATTGACAATGTGG
GCGGGGATACAGACACGAAGACTTTGCAGCGTTTCATCATCTCCGCCACC
AAGGACATCCAGTTGACTTTGCTCATGACCTCCATCCAGATGGGCTGCAA
GGCTATTGCCCGTGCCGTGCGCAAGGCCGGCATTGCGGGCTTGTACGGGT
TGCACGGATCGGAGAACATCTCCGGAGACCAGGTCAAAAAGCTAGACGTG
CTCTCAGATGAGATCTTTGTCAACTGTCTCAAGGAATCACACTGTTGCGC
GGTACTCGTGTCGGAGGAGAGAGATGAACCTATCATCGTGGAGGCCACAA
AGGCTGGCAAGTATTGTGTGGCATTCGATCCCCTAGACGGGTCGTCCAAT
ATCGATTGCAATGTCTCCACGGGCACTATTTTCGCCGTCTACGAGCGCGT
CTCCCCCTCCGATCAGACAGCCACCGTGGACGACATCCTGCGGGCGGGCA
CGGCGATCGTAGCGGCGGGATACTGCATGTACGGGTCGGCGACAGACATG
GTGCTGACGTTCGGGCTCGGCGTGCACCGTTTCACGCTGGACCCCACGCT
GGGCGAATTCATCCACACGCAGGGTCCTGTTCAATTTCCAGCCGTGGCCA
AGCGTATCTACTCCTGCAACGAGGGCAACTACGCGCTGTGGGACGAGGCC
ATGCGCGCCGCCGTGGACGGCTTCAAGCAGCAGGACCCACCTTATGCAGC
GCGGTACGTCGGCTCCATGGTCTCAGACGTACACCGCACTCTGCTCTACG
GAGGTATCTTTCTTTACCCGGCCGACCGCAAGAGCAAGATCGGCAAGCTG
CGCGTGCTGTACGAGGGCTTCCCCATGGCCAAGATCGTGGAGGACGCGGG
CGGAATCGCCACTACGGGCCTCTTTCAGGGGAAAATACAGCGCGTACTCA
ATCTGCACCCCACCGGCGTGCATGATCGCTGCCCCATCATCCTCGGTACG
CCCTCCGACGTACAGACCGTGCTAGACATCTATGCCCAGGTGTCCGCCGA
GACCGCCAAGAGGGAGGCGGCGGCCAAGTCGAAAGAGCTGGCCCTGTCCT
AGGCGGATGCGTGCATGTAGATTCGACAACATGTCACCTAAAAGACGCTG
CATGAAGATGAACAGGACGAACAACTGCAAAGCTGGACCATAAGAACAAA
CAGAAGCAGCAGCTACGGCAACAATAACCACAGCCAGATTAAATCTGGCA
ATTGTACTTACTGGCCAACCAGCCCAGGAGATGTGCTTCTCTGTATTTGA
GAGGGAGGAAGTCAGAGGACGAAGTGGGAAGAAAAACACATTTAAATGAG
AGACAGAGACGGAAGACTGCATCTCATTAGGAGTTGTGTGTGTGTGTGTG
TGTGTTTTTTTTTTTTGGCGATTTTATTTTTTCAGTATGGATAGCGGTGG
TTAAAAGAACGAAAAGATATTCCGTTGCAGGAAGTGTGGGGCGTGACGGA
AATGTAGGATGGATGGCACAACATGCTGTTGGGTTACCAGGGATTTGAAT
AAGTTGGAGATGGCGTTATGTGATCGATGTCAAAAAAATACGCAATAAGG
AAAGAGACGCGCACATGTGGC back to topprotein sequence of jgi.p|Nanoce1779_2|587373 >mRNA_4654-protein ID=mRNA_4654-protein|Name=jgi.p|Nanoce1779_2|587373|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MATNDIDNVGGDTDTKTLQRFIISATKDIQLTLLMTSIQMGCKAIARAVR
KAGIAGLYGLHGSENISGDQVKKLDVLSDEIFVNCLKESHCCAVLVSEER
DEPIIVEATKAGKYCVAFDPLDGSSNIDCNVSTGTIFAVYERVSPSDQTA
TVDDILRAGTAIVAAGYCMYGSATDMVLTFGLGVHRFTLDPTLGEFIHTQ
GPVQFPAVAKRIYSCNEGNYALWDEAMRAAVDGFKQQDPPYAARYVGSMV
SDVHRTLLYGGIFLYPADRKSKIGKLRVLYEGFPMAKIVEDAGGIATTGL
FQGKIQRVLNLHPTGVHDRCPIILGTPSDVQTVLDIYAQVSAETAKREAA
AKSKELALS* back to topmRNA from alignment at scaffold_9:308974..310966+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4654 ID=mRNA_4654|Name=jgi.p|Nanoce1779_2|587373|organism=Nannochloropsis oceanica|type=mRNA|length=1993bp|location=Sequence derived from alignment at scaffold_9:308974..310966+ (Nannochloropsis oceanica)
ACAGGAGGACGCGATAGTCACCATGGCGACCAATGATATTGACAATGTGG
GCGGGGATACAGACACGAAGACTTTGCAGCGTTTCATCATCTCCGCCACC
AAGGACATCCAGTTGACTTTGCTCATGACCTCCATCCAGATGGGCTGCAA
GGCTATTGCCCGTGCCGTGCGCAAGGCCGGCATTGCGGGCTTGTACGGGT
TGCACGGATCGGAGAACATCTCCGGAGACCAGGTCAAAAAGCTAGACGTG
CTCTCAGATGAGATCTTTGTCAACTGTCTCAAGGTATGCCGGTCAGGCCA
GAAGGACAAGGAAAGCGTGCGTCTGTAGAATTTGCCTTACTTCTCTCGAA
GCGTACGTTCATCTTCTTCTTCCCTTATTCGTTCTTTTCCCAGGAATCAC
ACTGTTGCGCGGTACTCGTGTCGGAGGAGAGAGATGAACCTATCATCGTG
GAGGCCACAAAGGCTGGTACGTACATAGCGGAGGCAGTACACGTCACCTA
GCATTGAGAAAGCACGGCTGATAGGGCATTTCGTTGACTGTCCTTCCCCC
CACCCTTGTGAACGGCTGCAGGCAAGTATTGTGTGGCATTCGATCCCCTA
GACGGGTCGTCCAATATCGATTGCAATGTCTCCACGGGCACTATTTTCGC
CGTCTACGAGCGCGTCTCCCCCTCCGATCAGACAGCCACGTAAGCCACCT
TCTCCTTCTTCCCATTGTCACGTCCTTCTCATTATCACGCGTACCATTCT
CGTCACTCTTCCCCTTTTGCATGCCCATCTTAATATTTCTCGTCGGTGCA
ACGCTGCCCTCTTTCTTATATTGCCCCCCTGTGCTTTTCCTATCAGCGTG
GACGACATCCTGCGGGCGGGCACGGCGATCGTAGCGGCGGGATACTGCAT
GTACGGGTCGGCGACAGACATGGTGCTGACGTTCGGGCTCGGCGTGCACC
GTTTCACGCTGGACCCCACGCTGGGCGAATTCATCCACACGCAGGGTCCT
GTTCAATTTCCAGCCGTGGCCAAGCGTATCTACTCCTGCAACGAGGGCAA
CTACGCGCTGTGGGACGAGGCCATGCGCGCCGCCGTGGACGGCTTCAAGC
AGCAGGACCCACCTTATGCAGCGCGGTACGTCGGCTCCATGGTCTCAGAC
GTACACCGCACTCTGCTCTACGGAGGTATCTTTCTTTACCCGGCCGACCG
CAAGAGCAAGATCGGCAAGCTGCGCGTGCTGTACGAGGGCTTCCCCATGG
CCAAGATCGTGGAGGACGCGGGCGGAATCGCCACTACGGGCCTCTTTCAG
GGGAAAATACAGCGCGTACTCAATCTGCACCCCACCGGCGTGCATGATCG
CTGCCCCATCATCCTCGGTACGCCCTCCGACGTACAGACCGTGCTAGACA
TCTATGCCCAGGTGTCCGCCGAGACCGCCAAGAGGGAGGCGGCGGCCAAG
TCGAAAGAGCTGGCCCTGTCCTAGGCGGATGCGTGCATGTAGATTCGACA
ACATGTCACCTAAAAGACGCTGCATGAAGATGAACAGGACGAACAACTGC
AAAGCTGGACCATAAGAACAAACAGAAGCAGCAGCTACGGCAACAATAAC
CACAGCCAGATTAAATCTGGCAATTGTACTTACTGGCCAACCAGCCCAGG
AGATGTGCTTCTCTGTATTTGAGAGGGAGGAAGTCAGAGGACGAAGTGGG
AAGAAAAACACATTTAAATGAGAGACAGAGACGGAAGACTGCATCTCATT
AGGAGTTGTGTGTGTGTGTGTGTGTGTTTTTTTTTTTTGGCGATTTTATT
TTTTCAGTATGGATAGCGGTGGTTAAAAGAACGAAAAGATATTCCGTTGC
AGGAAGTGTGGGGCGTGACGGAAATGTAGGATGGATGGCACAACATGCTG
TTGGGTTACCAGGGATTTGAATAAGTTGGAGATGGCGTTATGTGATCGAT
GTCAAAAAAATACGCAATAAGGAAAGAGACGCGCACATGTGGC back to topCoding sequence (CDS) from alignment at scaffold_9:308974..310966+ >mRNA_4654 ID=mRNA_4654|Name=jgi.p|Nanoce1779_2|587373|organism=Nannochloropsis oceanica|type=CDS|length=4320bp|location=Sequence derived from alignment at scaffold_9:308974..310966+ (Nannochloropsis oceanica)
ATGGCGACCAATGATATTGACAATGTGGGCGGGGATACAGACACGAAGAC
TTTGCAGCGTTTCATCATCTCCGCCACCAAGGACATCCAGTTGACTTTGC
TCATGACCTCCATCCAGATGGGCTGCAAGGCTATTGCCCGTGCCGTGCGC
AAGGCCGGCATTGCGGGCTTGTACGGGTTGCACGGATCGGAGAACATCTC
CGGAGACCAGGTCAAAAAGCTAGACGTGCTCTCAGATGAGATCTTTGTCA
ACTGTCTCAAGGAATCACACTGTTGCGCGGTACTCGTGTCGGAGGAGAGA
GATGAACCTATCATCGTGGAGGCCACAAAGGCTGGCAAGTATTGTGTGGC
ATTCGATCCCCTAGACGGGTCGTCCAATATCGATTGCAATGTCTCCACGG
GCACTATTTTCGCCGTCTACGAGCGCGTCTCCCCCTCCGATCAGACAGCC
ACCGTGGACGACATCCTGCGGGCGGGCACGGCGATCGTAGCGGCGGGATA
CTGCATGTACGGGTCGGCGACAGACATGGTGCTGACGTTCGGGCTCGGCG
TGCACCGTTTCACGCTGGACCCCACGCTGGGCGAATTCATCCACACGCAG
GGTCCTGTTCAATTTCCAGCCGTGGCCAAGCGTATCTACTCCTGCAACGA
GGGCAACTACGCGCTGTGGGACGAGGCCATGCGCGCCGCCGTGGACGGCT
TCAAGCAGCAGGACCCACCTTATGCAGCGCGGTACGTCGGCTCCATGGTC
TCAGACGTACACCGCACTCTGCTCTACGGAGGTATCTTTCTTTACCCGGC
CGACCGCAAGAGCAAGATCGGCAAGCTGCGCGTGCTGTACGAGGGCTTCC
CCATGGCCAAGATCGTGGAGGACGCGGGCGGAATCGCCACTACGGGCCTC
TTTCAGGGGAAAATACAGCGCGTACTCAATCTGCACCCCACCGGCGTGCA
TGATCGCTGCCCCATCATCCTCGGTACGCCCTCCGACGTACAGACCGTGC
TAGACATCTATGCCCAGGTGTCCGCCGAGACCGCCAAGAGGGAGGCGGCG
GCCAAGTCGAAAGAGCTGGCCCTGTCCTAGATGGCGACCAATGATATTGA
CAATGTGGGCGGGGATACAGACACGAAGACTTTGCAGCGTTTCATCATCT
CCGCCACCAAGGACATCCAGTTGACTTTGCTCATGACCTCCATCCAGATG
GGCTGCAAGGCTATTGCCCGTGCCGTGCGCAAGGCCGGCATTGCGGGCTT
GTACGGGTTGCACGGATCGGAGAACATCTCCGGAGACCAGGTCAAAAAGC
TAGACGTGCTCTCAGATGAGATCTTTGTCAACTGTCTCAAGGAATCACAC
TGTTGCGCGGTACTCGTGTCGGAGGAGAGAGATGAACCTATCATCGTGGA
GGCCACAAAGGCTGGCAAGTATTGTGTGGCATTCGATCCCCTAGACGGGT
CGTCCAATATCGATTGCAATGTCTCCACGGGCACTATTTTCGCCGTCTAC
GAGCGCGTCTCCCCCTCCGATCAGACAGCCACCGTGGACGACATCCTGCG
GGCGGGCACGGCGATCGTAGCGGCGGGATACTGCATGTACGGGTCGGCGA
CAGACATGGTGCTGACGTTCGGGCTCGGCGTGCACCGTTTCACGCTGGAC
CCCACGCTGGGCGAATTCATCCACACGCAGGGTCCTGTTCAATTTCCAGC
CGTGGCCAAGCGTATCTACTCCTGCAACGAGGGCAACTACGCGCTGTGGG
ACGAGGCCATGCGCGCCGCCGTGGACGGCTTCAAGCAGCAGGACCCACCT
TATGCAGCGCGGTACGTCGGCTCCATGGTCTCAGACGTACACCGCACTCT
GCTCTACGGAGGTATCTTTCTTTACCCGGCCGACCGCAAGAGCAAGATCG
GCAAGCTGCGCGTGCTGTACGAGGGCTTCCCCATGGCCAAGATCGTGGAG
GACGCGGGCGGAATCGCCACTACGGGCCTCTTTCAGGGGAAAATACAGCG
CGTACTCAATCTGCACCCCACCGGCGTGCATGATCGCTGCCCCATCATCC
TCGGTACGCCCTCCGACGTACAGACCGTGCTAGACATCTATGCCCAGGTG
TCCGCCGAGACCGCCAAGAGGGAGGCGGCGGCCAAGTCGAAAGAGCTGGC
CCTGTCCTAGATGGCGACCAATGATATTGACAATGTGGGCGGGGATACAG
ACACGAAGACTTTGCAGCGTTTCATCATCTCCGCCACCAAGGACATCCAG
TTGACTTTGCTCATGACCTCCATCCAGATGGGCTGCAAGGCTATTGCCCG
TGCCGTGCGCAAGGCCGGCATTGCGGGCTTGTACGGGTTGCACGGATCGG
AGAACATCTCCGGAGACCAGGTCAAAAAGCTAGACGTGCTCTCAGATGAG
ATCTTTGTCAACTGTCTCAAGGAATCACACTGTTGCGCGGTACTCGTGTC
GGAGGAGAGAGATGAACCTATCATCGTGGAGGCCACAAAGGCTGGCAAGT
ATTGTGTGGCATTCGATCCCCTAGACGGGTCGTCCAATATCGATTGCAAT
GTCTCCACGGGCACTATTTTCGCCGTCTACGAGCGCGTCTCCCCCTCCGA
TCAGACAGCCACCGTGGACGACATCCTGCGGGCGGGCACGGCGATCGTAG
CGGCGGGATACTGCATGTACGGGTCGGCGACAGACATGGTGCTGACGTTC
GGGCTCGGCGTGCACCGTTTCACGCTGGACCCCACGCTGGGCGAATTCAT
CCACACGCAGGGTCCTGTTCAATTTCCAGCCGTGGCCAAGCGTATCTACT
CCTGCAACGAGGGCAACTACGCGCTGTGGGACGAGGCCATGCGCGCCGCC
GTGGACGGCTTCAAGCAGCAGGACCCACCTTATGCAGCGCGGTACGTCGG
CTCCATGGTCTCAGACGTACACCGCACTCTGCTCTACGGAGGTATCTTTC
TTTACCCGGCCGACCGCAAGAGCAAGATCGGCAAGCTGCGCGTGCTGTAC
GAGGGCTTCCCCATGGCCAAGATCGTGGAGGACGCGGGCGGAATCGCCAC
TACGGGCCTCTTTCAGGGGAAAATACAGCGCGTACTCAATCTGCACCCCA
CCGGCGTGCATGATCGCTGCCCCATCATCCTCGGTACGCCCTCCGACGTA
CAGACCGTGCTAGACATCTATGCCCAGGTGTCCGCCGAGACCGCCAAGAG
GGAGGCGGCGGCCAAGTCGAAAGAGCTGGCCCTGTCCTAGATGGCGACCA
ATGATATTGACAATGTGGGCGGGGATACAGACACGAAGACTTTGCAGCGT
TTCATCATCTCCGCCACCAAGGACATCCAGTTGACTTTGCTCATGACCTC
CATCCAGATGGGCTGCAAGGCTATTGCCCGTGCCGTGCGCAAGGCCGGCA
TTGCGGGCTTGTACGGGTTGCACGGATCGGAGAACATCTCCGGAGACCAG
GTCAAAAAGCTAGACGTGCTCTCAGATGAGATCTTTGTCAACTGTCTCAA
GGAATCACACTGTTGCGCGGTACTCGTGTCGGAGGAGAGAGATGAACCTA
TCATCGTGGAGGCCACAAAGGCTGGCAAGTATTGTGTGGCATTCGATCCC
CTAGACGGGTCGTCCAATATCGATTGCAATGTCTCCACGGGCACTATTTT
CGCCGTCTACGAGCGCGTCTCCCCCTCCGATCAGACAGCCACCGTGGACG
ACATCCTGCGGGCGGGCACGGCGATCGTAGCGGCGGGATACTGCATGTAC
GGGTCGGCGACAGACATGGTGCTGACGTTCGGGCTCGGCGTGCACCGTTT
CACGCTGGACCCCACGCTGGGCGAATTCATCCACACGCAGGGTCCTGTTC
AATTTCCAGCCGTGGCCAAGCGTATCTACTCCTGCAACGAGGGCAACTAC
GCGCTGTGGGACGAGGCCATGCGCGCCGCCGTGGACGGCTTCAAGCAGCA
GGACCCACCTTATGCAGCGCGGTACGTCGGCTCCATGGTCTCAGACGTAC
ACCGCACTCTGCTCTACGGAGGTATCTTTCTTTACCCGGCCGACCGCAAG
AGCAAGATCGGCAAGCTGCGCGTGCTGTACGAGGGCTTCCCCATGGCCAA
GATCGTGGAGGACGCGGGCGGAATCGCCACTACGGGCCTCTTTCAGGGGA
AAATACAGCGCGTACTCAATCTGCACCCCACCGGCGTGCATGATCGCTGC
CCCATCATCCTCGGTACGCCCTCCGACGTACAGACCGTGCTAGACATCTA
TGCCCAGGTGTCCGCCGAGACCGCCAAGAGGGAGGCGGCGGCCAAGTCGA
AAGAGCTGGCCCTGTCCTAG back to top
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