jgi.p|Nanoce1779_2|587366, mRNA_4653 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587366
Unique NamemRNA_4653
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2229
Alignment locationscaffold_9:305236..307464 -

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Properties
Property NameValue
TranscriptId587452
TrackFilteredModels2
ProteinId587366
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:305236..307464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587366gene_4653Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587366mRNA_4653-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4653CDS_4653Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4653 ID=mRNA_4653|Name=jgi.p|Nanoce1779_2|587366|organism=Nannochloropsis oceanica|type=mRNA|length=2229bp
GTGCTTCAAAGGCGCGCCCCGCGACGTTTGCGGCGGCAGCGACAACTTCT
CGGTGGCGCGATCGTACACAGGGCATTCGGCAAGATGGTTACGGAAGGTA
GACGCATTTGTTGAGGCCGCGAAGAACATGCTGGTGGCCCAAGAGCTGGA
AGACATGATCGAGTTTGTGCTTGATGGAGGGGGCGTTCCTGTCGACTGCT
TGGCCCAGCGCTGGCGGCCATGGCGCAGTGTATATATGAATGGAACGGCA
CCGGCAAAAGCCTTTGTTTCGGATCTCGTGCGGGACGGCTTGGATCGTTT
TCAAGTGTTGAACGAGCCGGCAGACCTGGAGTTGTGGAAAGGCTTAGCTG
ATCCAAAAGTGAATTATGGCAAGTTCTCAGATGGTGCCTACCCTTATCAA
CTCTGGGAGCCTGGCTCTCAAGCCGGCATTCAAGCGTTGATGGAAGTGTT
TCGGGGAGGTCAGCCTCATGCACCTGGCCTGGACTTCGCCAGCAACTCGG
ACGCGGCCATGTTTCAGGTATATGCAGGACTGGGACTTAACCAACCGCTG
CGACAGGATGGCGAAATTAAGGAAGAAGTGGAAAAGCCAGAGGAAGAGGA
TATGGGTGGCTTGGTCACGATTATCAGGCCAGGTCTGGCTTTGATTTTGC
TTGATCGCCGCGGAGCCGAGTACCGGATTTACGCGTTTGACCCCATGCAG
CCCTTATCGTCATCCTCGGGGCAGGACTTAAGGGAGCTTGAGATCTCTTC
GGCGACTCGGTTGGTCTTGCCCGGCATGGAGGGAAGGAAGGAACGAGGTA
AAGGACGGCGCATCCAATCTTTAACGGTACTGGAAGACAAATTGTTGGTG
AGCACATCCATGGGAAATTATTTTCTTTATGATATTGAGAGTGATAACGG
GGTGTCTGATGGCAACATCTGTCCATTACTGACGCTTTGCCTGACGGGAT
CGTTCAAAAGCATTAAATCTCCTTTCATTCCAAGGGCGGCCGTCTCGATG
CCGAAAGGGAGAGTGAGGCGGCGGACGCCTGAGACTCCAAAGATCGAGAC
AGTACGATTTTCCTTTTCGTCGACAATTCTTCTATTGGACCAGAAGCTGA
GCAAGAGCAACGCGACACTGACTTTGCTGGAGCTGTACATCGACAATTTC
TGGCAGCAAAAGTATTGCATTCTTGCTTATCAGGTTCGGAGGAGACAGAC
CGATCACGACTTCCAGGACGATGTGGTGACGAGTGACGGGTGCTTGTGGT
GGAGAGCGGATAATGTTTTAGGGAAAAAAGAGGAAGCAACACCGGGGTGG
GAAGTGCAATCTGCGGTTGCCGTCCTTGATGTAGGAGAGGGTGTAGTGCT
TATCTTTGCCTCGGCGGCGGGCAAGTTGTACATGACAGAACATTCCTTAG
TCAAATTCTCGGCTGGATCAGCAGAAGAGGAGAATTGCGTGGTAGAAATG
GGAGTGGGCAATTCTGTTGCTGCCAGCGCTGCCACAATGGCGAGGATCAG
AGGGAACAGAGGGAAAGAGACCTCCACGGTTGTTATGTTGGTGAGCAGTG
ACGGGTTCTGCTACAATTCACACCTGCACAACACCGGCCCTTTTAATGTC
TGCGAACTCATTCCCCATGCTACCCCAGGCGTCCTCGATTTTACTTATGC
CAGCGTCACCAAATGGGTCCACTTTCTGCGGGGCACCTGTGCCAGGAACG
CAAGCATCACTTCTTCTTCCACTTCATGGTCCAGACGCCGCCTTGTAAAT
GTATGCGATGCAGACTTGCTTCATGGGTCCTATGATCTAGGTTACCATCC
CTCCATTGTGCTTTTCCCCACAAGCATCAGCGGTAGCGATGGTGGTGTGG
GTATGCTGGAAGTGCACCGCGGCTTTACCGAAGATTGTCCCGAAGAATCC
CTTACTCGCTTGGGAAAAAATAAGGATGATGAGAACGAAAAGGATGTGGT
AAGTGGGTCGCACCTCCGAAGCCTCAAAGCGTGCGAGTGTGGTGCCGCTC
TTGTCCGGCCAAAGGGCAGTTTGGTAGCTGACAGTTTTCCACTTCAACTC
CGGTTTGTGTGAACTTTTGACATTTCGAGTGGAAGTGACGGTCAAAAAGG
ACAGGACAAAGCAAAAAATAATCAATGACGAGCTAGACCGGCAAGTCAAA
TAAAACAAGCAGCAAACAGGAATTGCGTCTTCCTGCAATATACGATCGTT
GCCCGTCTTCCCCTCCTCTCCTTTTTTTG
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protein sequence of jgi.p|Nanoce1779_2|587366

>mRNA_4653-protein ID=mRNA_4653-protein|Name=jgi.p|Nanoce1779_2|587366|organism=Nannochloropsis oceanica|type=polypeptide|length=645bp
MLVAQELEDMIEFVLDGGGVPVDCLAQRWRPWRSVYMNGTAPAKAFVSDL
VRDGLDRFQVLNEPADLELWKGLADPKVNYGKFSDGAYPYQLWEPGSQAG
IQALMEVFRGGQPHAPGLDFASNSDAAMFQVYAGLGLNQPLRQDGEIKEE
VEKPEEEDMGGLVTIIRPGLALILLDRRGAEYRIYAFDPMQPLSSSSGQD
LRELEISSATRLVLPGMEGRKERGKGRRIQSLTVLEDKLLVSTSMGNYFL
YDIESDNGVSDGNICPLLTLCLTGSFKSIKSPFIPRAAVSMPKGRVRRRT
PETPKIETVRFSFSSTILLLDQKLSKSNATLTLLELYIDNFWQQKYCILA
YQVRRRQTDHDFQDDVVTSDGCLWWRADNVLGKKEEATPGWEVQSAVAVL
DVGEGVVLIFASAAGKLYMTEHSLVKFSAGSAEEENCVVEMGVGNSVAAS
AATMARIRGNRGKETSTVVMLVSSDGFCYNSHLHNTGPFNVCELIPHATP
GVLDFTYASVTKWVHFLRGTCARNASITSSSTSWSRRRLVNVCDADLLHG
SYDLGYHPSIVLFPTSISGSDGGVGMLEVHRGFTEDCPEESLTRLGKNKD
DENEKDVVSGSHLRSLKACECGAALVRPKGSLVADSFPLQLRFV*
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mRNA from alignment at scaffold_9:305236..307464-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4653 ID=mRNA_4653|Name=jgi.p|Nanoce1779_2|587366|organism=Nannochloropsis oceanica|type=mRNA|length=2229bp|location=Sequence derived from alignment at scaffold_9:305236..307464- (Nannochloropsis oceanica)
GTGCTTCAAAGGCGCGCCCCGCGACGTTTGCGGCGGCAGCGACAACTTCT
CGGTGGCGCGATCGTACACAGGGCATTCGGCAAGATGGTTACGGAAGGTA
GACGCATTTGTTGAGGCCGCGAAGAACATGCTGGTGGCCCAAGAGCTGGA
AGACATGATCGAGTTTGTGCTTGATGGAGGGGGCGTTCCTGTCGACTGCT
TGGCCCAGCGCTGGCGGCCATGGCGCAGTGTATATATGAATGGAACGGCA
CCGGCAAAAGCCTTTGTTTCGGATCTCGTGCGGGACGGCTTGGATCGTTT
TCAAGTGTTGAACGAGCCGGCAGACCTGGAGTTGTGGAAAGGCTTAGCTG
ATCCAAAAGTGAATTATGGCAAGTTCTCAGATGGTGCCTACCCTTATCAA
CTCTGGGAGCCTGGCTCTCAAGCCGGCATTCAAGCGTTGATGGAAGTGTT
TCGGGGAGGTCAGCCTCATGCACCTGGCCTGGACTTCGCCAGCAACTCGG
ACGCGGCCATGTTTCAGGTATATGCAGGACTGGGACTTAACCAACCGCTG
CGACAGGATGGCGAAATTAAGGAAGAAGTGGAAAAGCCAGAGGAAGAGGA
TATGGGTGGCTTGGTCACGATTATCAGGCCAGGTCTGGCTTTGATTTTGC
TTGATCGCCGCGGAGCCGAGTACCGGATTTACGCGTTTGACCCCATGCAG
CCCTTATCGTCATCCTCGGGGCAGGACTTAAGGGAGCTTGAGATCTCTTC
GGCGACTCGGTTGGTCTTGCCCGGCATGGAGGGAAGGAAGGAACGAGGTA
AAGGACGGCGCATCCAATCTTTAACGGTACTGGAAGACAAATTGTTGGTG
AGCACATCCATGGGAAATTATTTTCTTTATGATATTGAGAGTGATAACGG
GGTGTCTGATGGCAACATCTGTCCATTACTGACGCTTTGCCTGACGGGAT
CGTTCAAAAGCATTAAATCTCCTTTCATTCCAAGGGCGGCCGTCTCGATG
CCGAAAGGGAGAGTGAGGCGGCGGACGCCTGAGACTCCAAAGATCGAGAC
AGTACGATTTTCCTTTTCGTCGACAATTCTTCTATTGGACCAGAAGCTGA
GCAAGAGCAACGCGACACTGACTTTGCTGGAGCTGTACATCGACAATTTC
TGGCAGCAAAAGTATTGCATTCTTGCTTATCAGGTTCGGAGGAGACAGAC
CGATCACGACTTCCAGGACGATGTGGTGACGAGTGACGGGTGCTTGTGGT
GGAGAGCGGATAATGTTTTAGGGAAAAAAGAGGAAGCAACACCGGGGTGG
GAAGTGCAATCTGCGGTTGCCGTCCTTGATGTAGGAGAGGGTGTAGTGCT
TATCTTTGCCTCGGCGGCGGGCAAGTTGTACATGACAGAACATTCCTTAG
TCAAATTCTCGGCTGGATCAGCAGAAGAGGAGAATTGCGTGGTAGAAATG
GGAGTGGGCAATTCTGTTGCTGCCAGCGCTGCCACAATGGCGAGGATCAG
AGGGAACAGAGGGAAAGAGACCTCCACGGTTGTTATGTTGGTGAGCAGTG
ACGGGTTCTGCTACAATTCACACCTGCACAACACCGGCCCTTTTAATGTC
TGCGAACTCATTCCCCATGCTACCCCAGGCGTCCTCGATTTTACTTATGC
CAGCGTCACCAAATGGGTCCACTTTCTGCGGGGCACCTGTGCCAGGAACG
CAAGCATCACTTCTTCTTCCACTTCATGGTCCAGACGCCGCCTTGTAAAT
GTATGCGATGCAGACTTGCTTCATGGGTCCTATGATCTAGGTTACCATCC
CTCCATTGTGCTTTTCCCCACAAGCATCAGCGGTAGCGATGGTGGTGTGG
GTATGCTGGAAGTGCACCGCGGCTTTACCGAAGATTGTCCCGAAGAATCC
CTTACTCGCTTGGGAAAAAATAAGGATGATGAGAACGAAAAGGATGTGGT
AAGTGGGTCGCACCTCCGAAGCCTCAAAGCGTGCGAGTGTGGTGCCGCTC
TTGTCCGGCCAAAGGGCAGTTTGGTAGCTGACAGTTTTCCACTTCAACTC
CGGTTTGTGTGAACTTTTGACATTTCGAGTGGAAGTGACGGTCAAAAAGG
ACAGGACAAAGCAAAAAATAATCAATGACGAGCTAGACCGGCAAGTCAAA
TAAAACAAGCAGCAAACAGGAATTGCGTCTTCCTGCAATATACGATCGTT
GCCCGTCTTCCCCTCCTCTCCTTTTTTTG
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Coding sequence (CDS) from alignment at scaffold_9:305236..307464-

>mRNA_4653 ID=mRNA_4653|Name=jgi.p|Nanoce1779_2|587366|organism=Nannochloropsis oceanica|type=CDS|length=1935bp|location=Sequence derived from alignment at scaffold_9:305236..307464- (Nannochloropsis oceanica)
ATGCTGGTGGCCCAAGAGCTGGAAGACATGATCGAGTTTGTGCTTGATGG
AGGGGGCGTTCCTGTCGACTGCTTGGCCCAGCGCTGGCGGCCATGGCGCA
GTGTATATATGAATGGAACGGCACCGGCAAAAGCCTTTGTTTCGGATCTC
GTGCGGGACGGCTTGGATCGTTTTCAAGTGTTGAACGAGCCGGCAGACCT
GGAGTTGTGGAAAGGCTTAGCTGATCCAAAAGTGAATTATGGCAAGTTCT
CAGATGGTGCCTACCCTTATCAACTCTGGGAGCCTGGCTCTCAAGCCGGC
ATTCAAGCGTTGATGGAAGTGTTTCGGGGAGGTCAGCCTCATGCACCTGG
CCTGGACTTCGCCAGCAACTCGGACGCGGCCATGTTTCAGGTATATGCAG
GACTGGGACTTAACCAACCGCTGCGACAGGATGGCGAAATTAAGGAAGAA
GTGGAAAAGCCAGAGGAAGAGGATATGGGTGGCTTGGTCACGATTATCAG
GCCAGGTCTGGCTTTGATTTTGCTTGATCGCCGCGGAGCCGAGTACCGGA
TTTACGCGTTTGACCCCATGCAGCCCTTATCGTCATCCTCGGGGCAGGAC
TTAAGGGAGCTTGAGATCTCTTCGGCGACTCGGTTGGTCTTGCCCGGCAT
GGAGGGAAGGAAGGAACGAGGTAAAGGACGGCGCATCCAATCTTTAACGG
TACTGGAAGACAAATTGTTGGTGAGCACATCCATGGGAAATTATTTTCTT
TATGATATTGAGAGTGATAACGGGGTGTCTGATGGCAACATCTGTCCATT
ACTGACGCTTTGCCTGACGGGATCGTTCAAAAGCATTAAATCTCCTTTCA
TTCCAAGGGCGGCCGTCTCGATGCCGAAAGGGAGAGTGAGGCGGCGGACG
CCTGAGACTCCAAAGATCGAGACAGTACGATTTTCCTTTTCGTCGACAAT
TCTTCTATTGGACCAGAAGCTGAGCAAGAGCAACGCGACACTGACTTTGC
TGGAGCTGTACATCGACAATTTCTGGCAGCAAAAGTATTGCATTCTTGCT
TATCAGGTTCGGAGGAGACAGACCGATCACGACTTCCAGGACGATGTGGT
GACGAGTGACGGGTGCTTGTGGTGGAGAGCGGATAATGTTTTAGGGAAAA
AAGAGGAAGCAACACCGGGGTGGGAAGTGCAATCTGCGGTTGCCGTCCTT
GATGTAGGAGAGGGTGTAGTGCTTATCTTTGCCTCGGCGGCGGGCAAGTT
GTACATGACAGAACATTCCTTAGTCAAATTCTCGGCTGGATCAGCAGAAG
AGGAGAATTGCGTGGTAGAAATGGGAGTGGGCAATTCTGTTGCTGCCAGC
GCTGCCACAATGGCGAGGATCAGAGGGAACAGAGGGAAAGAGACCTCCAC
GGTTGTTATGTTGGTGAGCAGTGACGGGTTCTGCTACAATTCACACCTGC
ACAACACCGGCCCTTTTAATGTCTGCGAACTCATTCCCCATGCTACCCCA
GGCGTCCTCGATTTTACTTATGCCAGCGTCACCAAATGGGTCCACTTTCT
GCGGGGCACCTGTGCCAGGAACGCAAGCATCACTTCTTCTTCCACTTCAT
GGTCCAGACGCCGCCTTGTAAATGTATGCGATGCAGACTTGCTTCATGGG
TCCTATGATCTAGGTTACCATCCCTCCATTGTGCTTTTCCCCACAAGCAT
CAGCGGTAGCGATGGTGGTGTGGGTATGCTGGAAGTGCACCGCGGCTTTA
CCGAAGATTGTCCCGAAGAATCCCTTACTCGCTTGGGAAAAAATAAGGAT
GATGAGAACGAAAAGGATGTGGTAAGTGGGTCGCACCTCCGAAGCCTCAA
AGCGTGCGAGTGTGGTGCCGCTCTTGTCCGGCCAAAGGGCAGTTTGGTAG
CTGACAGTTTTCCACTTCAACTCCGGTTTGTGTGA
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Synonyms
Publications