jgi.p|Nanoce1779_2|587364, mRNA_4652 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587364
Unique NamemRNA_4652
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1439
Alignment locationscaffold_9:303819..305257 +

Link to JBrowse

Properties
Property NameValue
TranscriptId587450
TrackFilteredModels2
ProteinId587364
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:303819..305257 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587364gene_4652Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587364mRNA_4652-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4652CDS_4652Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4652 ID=mRNA_4652|Name=jgi.p|Nanoce1779_2|587364|organism=Nannochloropsis oceanica|type=mRNA|length=1439bp
ACAGTCAACCATGGGGCGCAGCACCAAGAGCGGGAAGCGGGAGATGAATC
CGGCGGACGCCTATCGCAAGGAGCAACGCAAGAAGGAGATCAAGAAAAAT
AAAAAGGACCGAAAGCGCGTGCGGGAATTGGGTGCTTATGTGAAAGACCC
CGACCTACTGAAGGTGGAGATGGAGAAAATGGAGAAAATGCTGACGGCGG
GCTTGCTGGACCACAAGCTTCTGGGCAAGCTCGACCAGATGCGGCACCTG
TACCCGGCCATCGTCAAGCTGCACGCCAAGAAGAAGGGCATGTTTGCTCG
GGGCGGCACCGTGGATGACGAAGAGTTGGAGGCCATGCTCGACGAGGCCG
AGCATGCATCAACCCAAGCTTCCACCCCAAAGCAATCCGCAGCAGTAGCG
TCCAGTGACGGCCAACATCCTGCAGCAGCGGCGCCTCCGGGACATCCCCC
ACGAGGCATCCCCCTGCCACCTCCCGGCCCACCTCCCGGTACTTCTCCCC
ATTTGCAACACCAATACAAAGCCGGCAGCAATAGCCTGCAGGCGACAGTG
CCCATATACGGCCAGCCTCTTCCACCCCCATCCATGCTACCGCCCCACCT
CGTTGGACGGCTCCCTCCCCCTCGCCCTCCCCGAGGACCCCCCCCCGGTT
TGCCACGGCATTTGGCTGCCGCCAGAGGTCCTGAACTCCCACCCCCCCCT
CCCGGTCCTCCTCCGAGCTATGTGGGACGACATGGTTCGCCCCTTTTGCC
CACGCCTACGCAATCACCCTTGCCGCCCCCCTACCCCCAAGGGCCACCCC
CTGGCGCTCCTCCAGGTATCCAGCCCTCAGGCTCGTTCCCTTCTTCGTCT
GCCCGCCCGTCAGCCCGCGTGCAAACTGTGGCAGACCCGCTTGATCCCTC
CGCTTCCAACTACGGGGAGTACCGAAAGATGTCCTACGTGGAACACCAGA
GAGGCGGAGCCGGCCCCCAAGGACAAGGCCCTCTGCCACCCGCCATAATG
GGCCCTAACATGCCACCATCAGGCACAGCTCTTCCTCAATTCAAAGGCCC
ATCCTCGACGCCAACCTTGTCGACGGCCAACTTTTCACGAGCTGCAGCAG
CGGGGCCGGCATTGGGACCCGTGGTGGGACCGTCCAGGCCCACGCAGGTG
GCCAAGGACTTGGTCGCTTTCATGCCTGCCTCCTTGCGCGTTAAGCGCCC
TGTACCTCCCCCTTCTTCGGCTGCAGCCGCCAGTATCATGCGTCCACGCA
ATGTGGGTTTGGCTCCCACAGCTGCTGCTGTGGTCAGGCCCGCGGAAGGA
AGTAGTGCGGCTGGATTCTCAGTGGTGGGTGAAGCAGTGAAACCCAAGGC
CGCGCAAGATTCTTACGACCAGTTTATGAGCGAACTTTCCGATTTGTTCT
GATGAGGACGTAAAAGTCAAAAAAAGGAGAGGAGGGGAA
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protein sequence of jgi.p|Nanoce1779_2|587364

>mRNA_4652-protein ID=mRNA_4652-protein|Name=jgi.p|Nanoce1779_2|587364|organism=Nannochloropsis oceanica|type=polypeptide|length=464bp
MGRSTKSGKREMNPADAYRKEQRKKEIKKNKKDRKRVRELGAYVKDPDLL
KVEMEKMEKMLTAGLLDHKLLGKLDQMRHLYPAIVKLHAKKKGMFARGGT
VDDEELEAMLDEAEHASTQASTPKQSAAVASSDGQHPAAAAPPGHPPRGI
PLPPPGPPPGTSPHLQHQYKAGSNSLQATVPIYGQPLPPPSMLPPHLVGR
LPPPRPPRGPPPGLPRHLAAARGPELPPPPPGPPPSYVGRHGSPLLPTPT
QSPLPPPYPQGPPPGAPPGIQPSGSFPSSSARPSARVQTVADPLDPSASN
YGEYRKMSYVEHQRGGAGPQGQGPLPPAIMGPNMPPSGTALPQFKGPSST
PTLSTANFSRAAAAGPALGPVVGPSRPTQVAKDLVAFMPASLRVKRPVPP
PSSAAAASIMRPRNVGLAPTAAAVVRPAEGSSAAGFSVVGEAVKPKAAQD
SYDQFMSELSDLF*
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mRNA from alignment at scaffold_9:303819..305257+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4652 ID=mRNA_4652|Name=jgi.p|Nanoce1779_2|587364|organism=Nannochloropsis oceanica|type=mRNA|length=1439bp|location=Sequence derived from alignment at scaffold_9:303819..305257+ (Nannochloropsis oceanica)
ACAGTCAACCATGGGGCGCAGCACCAAGAGCGGGAAGCGGGAGATGAATC
CGGCGGACGCCTATCGCAAGGAGCAACGCAAGAAGGAGATCAAGAAAAAT
AAAAAGGACCGAAAGCGCGTGCGGGAATTGGGTGCTTATGTGAAAGACCC
CGACCTACTGAAGGTGGAGATGGAGAAAATGGAGAAAATGCTGACGGCGG
GCTTGCTGGACCACAAGCTTCTGGGCAAGCTCGACCAGATGCGGCACCTG
TACCCGGCCATCGTCAAGCTGCACGCCAAGAAGAAGGGCATGTTTGCTCG
GGGCGGCACCGTGGATGACGAAGAGTTGGAGGCCATGCTCGACGAGGCCG
AGCATGCATCAACCCAAGCTTCCACCCCAAAGCAATCCGCAGCAGTAGCG
TCCAGTGACGGCCAACATCCTGCAGCAGCGGCGCCTCCGGGACATCCCCC
ACGAGGCATCCCCCTGCCACCTCCCGGCCCACCTCCCGGTACTTCTCCCC
ATTTGCAACACCAATACAAAGCCGGCAGCAATAGCCTGCAGGCGACAGTG
CCCATATACGGCCAGCCTCTTCCACCCCCATCCATGCTACCGCCCCACCT
CGTTGGACGGCTCCCTCCCCCTCGCCCTCCCCGAGGACCCCCCCCCGGTT
TGCCACGGCATTTGGCTGCCGCCAGAGGTCCTGAACTCCCACCCCCCCCT
CCCGGTCCTCCTCCGAGCTATGTGGGACGACATGGTTCGCCCCTTTTGCC
CACGCCTACGCAATCACCCTTGCCGCCCCCCTACCCCCAAGGGCCACCCC
CTGGCGCTCCTCCAGGTATCCAGCCCTCAGGCTCGTTCCCTTCTTCGTCT
GCCCGCCCGTCAGCCCGCGTGCAAACTGTGGCAGACCCGCTTGATCCCTC
CGCTTCCAACTACGGGGAGTACCGAAAGATGTCCTACGTGGAACACCAGA
GAGGCGGAGCCGGCCCCCAAGGACAAGGCCCTCTGCCACCCGCCATAATG
GGCCCTAACATGCCACCATCAGGCACAGCTCTTCCTCAATTCAAAGGCCC
ATCCTCGACGCCAACCTTGTCGACGGCCAACTTTTCACGAGCTGCAGCAG
CGGGGCCGGCATTGGGACCCGTGGTGGGACCGTCCAGGCCCACGCAGGTG
GCCAAGGACTTGGTCGCTTTCATGCCTGCCTCCTTGCGCGTTAAGCGCCC
TGTACCTCCCCCTTCTTCGGCTGCAGCCGCCAGTATCATGCGTCCACGCA
ATGTGGGTTTGGCTCCCACAGCTGCTGCTGTGGTCAGGCCCGCGGAAGGA
AGTAGTGCGGCTGGATTCTCAGTGGTGGGTGAAGCAGTGAAACCCAAGGC
CGCGCAAGATTCTTACGACCAGTTTATGAGCGAACTTTCCGATTTGTTCT
GATGAGGACGTAAAAGTCAAAAAAAGGAGAGGAGGGGAA
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Coding sequence (CDS) from alignment at scaffold_9:303819..305257+

>mRNA_4652 ID=mRNA_4652|Name=jgi.p|Nanoce1779_2|587364|organism=Nannochloropsis oceanica|type=CDS|length=1392bp|location=Sequence derived from alignment at scaffold_9:303819..305257+ (Nannochloropsis oceanica)
ATGGGGCGCAGCACCAAGAGCGGGAAGCGGGAGATGAATCCGGCGGACGC
CTATCGCAAGGAGCAACGCAAGAAGGAGATCAAGAAAAATAAAAAGGACC
GAAAGCGCGTGCGGGAATTGGGTGCTTATGTGAAAGACCCCGACCTACTG
AAGGTGGAGATGGAGAAAATGGAGAAAATGCTGACGGCGGGCTTGCTGGA
CCACAAGCTTCTGGGCAAGCTCGACCAGATGCGGCACCTGTACCCGGCCA
TCGTCAAGCTGCACGCCAAGAAGAAGGGCATGTTTGCTCGGGGCGGCACC
GTGGATGACGAAGAGTTGGAGGCCATGCTCGACGAGGCCGAGCATGCATC
AACCCAAGCTTCCACCCCAAAGCAATCCGCAGCAGTAGCGTCCAGTGACG
GCCAACATCCTGCAGCAGCGGCGCCTCCGGGACATCCCCCACGAGGCATC
CCCCTGCCACCTCCCGGCCCACCTCCCGGTACTTCTCCCCATTTGCAACA
CCAATACAAAGCCGGCAGCAATAGCCTGCAGGCGACAGTGCCCATATACG
GCCAGCCTCTTCCACCCCCATCCATGCTACCGCCCCACCTCGTTGGACGG
CTCCCTCCCCCTCGCCCTCCCCGAGGACCCCCCCCCGGTTTGCCACGGCA
TTTGGCTGCCGCCAGAGGTCCTGAACTCCCACCCCCCCCTCCCGGTCCTC
CTCCGAGCTATGTGGGACGACATGGTTCGCCCCTTTTGCCCACGCCTACG
CAATCACCCTTGCCGCCCCCCTACCCCCAAGGGCCACCCCCTGGCGCTCC
TCCAGGTATCCAGCCCTCAGGCTCGTTCCCTTCTTCGTCTGCCCGCCCGT
CAGCCCGCGTGCAAACTGTGGCAGACCCGCTTGATCCCTCCGCTTCCAAC
TACGGGGAGTACCGAAAGATGTCCTACGTGGAACACCAGAGAGGCGGAGC
CGGCCCCCAAGGACAAGGCCCTCTGCCACCCGCCATAATGGGCCCTAACA
TGCCACCATCAGGCACAGCTCTTCCTCAATTCAAAGGCCCATCCTCGACG
CCAACCTTGTCGACGGCCAACTTTTCACGAGCTGCAGCAGCGGGGCCGGC
ATTGGGACCCGTGGTGGGACCGTCCAGGCCCACGCAGGTGGCCAAGGACT
TGGTCGCTTTCATGCCTGCCTCCTTGCGCGTTAAGCGCCCTGTACCTCCC
CCTTCTTCGGCTGCAGCCGCCAGTATCATGCGTCCACGCAATGTGGGTTT
GGCTCCCACAGCTGCTGCTGTGGTCAGGCCCGCGGAAGGAAGTAGTGCGG
CTGGATTCTCAGTGGTGGGTGAAGCAGTGAAACCCAAGGCCGCGCAAGAT
TCTTACGACCAGTTTATGAGCGAACTTTCCGATTTGTTCTGA
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Synonyms
Publications