jgi.p|Nanoce1779_2|587361, mRNA_4651 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587361
Unique NamemRNA_4651
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1144
Alignment locationscaffold_9:302115..303258 -

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Properties
Property NameValue
TranscriptId587447
TrackFilteredModels2
ProteinId587361
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:302115..303258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587361gene_4651Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587361mRNA_4651-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4651CDS_4651Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4651 ID=mRNA_4651|Name=jgi.p|Nanoce1779_2|587361|organism=Nannochloropsis oceanica|type=mRNA|length=1144bp
ACAGGCAAAGGTACTGGCGTCCTACACCGCCCTCCTACATCCTATACATC
CTATAATCCTACCCTTTTCCCTCTACCACCTCAACATCATCCATGGGGAA
CGATGGGGGCGTATTGGCCATGCAGCGCAAGTACATGCGCGGCCTTGGCA
ACAAGATGGGAGAGAAACCGAGCGAGGAAATGAACAAGCGTTTCCGGGCC
CTCATTCGCAGCCGGGTCTGTGCGGTGTCGAGTGAGGCGCTGCGGGATCC
CATCGTGGCGTGCGAGCTGGGACACCTGTACAATAAGGAGGCGGTGCTAC
TGGCACTTTTGGAACGGACACTTAATCCCGCATTTGCCCACATCCGGGGG
ATGAAGGACCTGATTCCATGCCGCCTTACTATCAACCCCAACTGGACAGA
CGAGACGGCAGCGGTGGCCGCGGCCAACGAAGCAAGTGCCTCCAGGGAAG
CCAAGGGGGAGAGCAAAAATGCCGGCGCTGGAGCCTTTGTGGACGAAGAA
TTGACGTCCAAGTATATCTGCCCCGTGGCGCGCGTGGAGATGAACGCCAA
GCAGCCCTTTGTGGTGATCCGGTCCACTGGGTGGGTGCTGAGTGAGCGGG
CCTTAAAAGAGATCGGGGAAGCGAGCTTGCAGGACGAGTACGGCCCGTTT
GATGTTGCTGACGACTTGATACAACTGGTGCCTGACGAGGAGGAGGAAAA
TAGATTGCGTCGGCGCATGAACGACCGAAGGAGTAAGGCGAAGAAGGAGA
GGAAGCGGAAGCAACGGGAAAAGCAAAATGACGAGGGTGGGAAGGGAGAG
GGGGAGCAAAAACTGGACGAGGCTGGGCAGCTGAAAAAGAAAAAGAAGGC
ACACAAGGTGGCCAAGCTGCTGCTCACCAACGGAGGCGGAAAGGAAGAAG
CTGGGTCCTCGTCTCACGTGTCGAGTGCCCCTATGGGACTTTCGACCTCG
TCCTTGGCCACTGAGGCGCAACGAGCAGCAGAGAAAGAGATGGCCTCGTC
GTCGGCATTTGCCTCGCTCTTCGACAACGGGAACAGCAATATGGACAAGA
ACAGCATGTTTAGCGTTCGACGCTGAGGTTGTGGATGATATGTAAAGAAA
AAAAAAAGGGTACAACTTGCAAATTGAAAGAAACACTCGTGGAT
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protein sequence of jgi.p|Nanoce1779_2|587361

>mRNA_4651-protein ID=mRNA_4651-protein|Name=jgi.p|Nanoce1779_2|587361|organism=Nannochloropsis oceanica|type=polypeptide|length=328bp
MGNDGGVLAMQRKYMRGLGNKMGEKPSEEMNKRFRALIRSRVCAVSSEAL
RDPIVACELGHLYNKEAVLLALLERTLNPAFAHIRGMKDLIPCRLTINPN
WTDETAAVAAANEASASREAKGESKNAGAGAFVDEELTSKYICPVARVEM
NAKQPFVVIRSTGWVLSERALKEIGEASLQDEYGPFDVADDLIQLVPDEE
EENRLRRRMNDRRSKAKKERKRKQREKQNDEGGKGEGEQKLDEAGQLKKK
KKAHKVAKLLLTNGGGKEEAGSSSHVSSAPMGLSTSSLATEAQRAAEKEM
ASSSAFASLFDNGNSNMDKNSMFSVRR*
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mRNA from alignment at scaffold_9:302115..303258-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4651 ID=mRNA_4651|Name=jgi.p|Nanoce1779_2|587361|organism=Nannochloropsis oceanica|type=mRNA|length=1144bp|location=Sequence derived from alignment at scaffold_9:302115..303258- (Nannochloropsis oceanica)
ACAGGCAAAGGTACTGGCGTCCTACACCGCCCTCCTACATCCTATACATC
CTATAATCCTACCCTTTTCCCTCTACCACCTCAACATCATCCATGGGGAA
CGATGGGGGCGTATTGGCCATGCAGCGCAAGTACATGCGCGGCCTTGGCA
ACAAGATGGGAGAGAAACCGAGCGAGGAAATGAACAAGCGTTTCCGGGCC
CTCATTCGCAGCCGGGTCTGTGCGGTGTCGAGTGAGGCGCTGCGGGATCC
CATCGTGGCGTGCGAGCTGGGACACCTGTACAATAAGGAGGCGGTGCTAC
TGGCACTTTTGGAACGGACACTTAATCCCGCATTTGCCCACATCCGGGGG
ATGAAGGACCTGATTCCATGCCGCCTTACTATCAACCCCAACTGGACAGA
CGAGACGGCAGCGGTGGCCGCGGCCAACGAAGCAAGTGCCTCCAGGGAAG
CCAAGGGGGAGAGCAAAAATGCCGGCGCTGGAGCCTTTGTGGACGAAGAA
TTGACGTCCAAGTATATCTGCCCCGTGGCGCGCGTGGAGATGAACGCCAA
GCAGCCCTTTGTGGTGATCCGGTCCACTGGGTGGGTGCTGAGTGAGCGGG
CCTTAAAAGAGATCGGGGAAGCGAGCTTGCAGGACGAGTACGGCCCGTTT
GATGTTGCTGACGACTTGATACAACTGGTGCCTGACGAGGAGGAGGAAAA
TAGATTGCGTCGGCGCATGAACGACCGAAGGAGTAAGGCGAAGAAGGAGA
GGAAGCGGAAGCAACGGGAAAAGCAAAATGACGAGGGTGGGAAGGGAGAG
GGGGAGCAAAAACTGGACGAGGCTGGGCAGCTGAAAAAGAAAAAGAAGGC
ACACAAGGTGGCCAAGCTGCTGCTCACCAACGGAGGCGGAAAGGAAGAAG
CTGGGTCCTCGTCTCACGTGTCGAGTGCCCCTATGGGACTTTCGACCTCG
TCCTTGGCCACTGAGGCGCAACGAGCAGCAGAGAAAGAGATGGCCTCGTC
GTCGGCATTTGCCTCGCTCTTCGACAACGGGAACAGCAATATGGACAAGA
ACAGCATGTTTAGCGTTCGACGCTGAGGTTGTGGATGATATGTAAAGAAA
AAAAAAAGGGTACAACTTGCAAATTGAAAGAAACACTCGTGGAT
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Coding sequence (CDS) from alignment at scaffold_9:302115..303258-

>mRNA_4651 ID=mRNA_4651|Name=jgi.p|Nanoce1779_2|587361|organism=Nannochloropsis oceanica|type=CDS|length=984bp|location=Sequence derived from alignment at scaffold_9:302115..303258- (Nannochloropsis oceanica)
ATGGGGAACGATGGGGGCGTATTGGCCATGCAGCGCAAGTACATGCGCGG
CCTTGGCAACAAGATGGGAGAGAAACCGAGCGAGGAAATGAACAAGCGTT
TCCGGGCCCTCATTCGCAGCCGGGTCTGTGCGGTGTCGAGTGAGGCGCTG
CGGGATCCCATCGTGGCGTGCGAGCTGGGACACCTGTACAATAAGGAGGC
GGTGCTACTGGCACTTTTGGAACGGACACTTAATCCCGCATTTGCCCACA
TCCGGGGGATGAAGGACCTGATTCCATGCCGCCTTACTATCAACCCCAAC
TGGACAGACGAGACGGCAGCGGTGGCCGCGGCCAACGAAGCAAGTGCCTC
CAGGGAAGCCAAGGGGGAGAGCAAAAATGCCGGCGCTGGAGCCTTTGTGG
ACGAAGAATTGACGTCCAAGTATATCTGCCCCGTGGCGCGCGTGGAGATG
AACGCCAAGCAGCCCTTTGTGGTGATCCGGTCCACTGGGTGGGTGCTGAG
TGAGCGGGCCTTAAAAGAGATCGGGGAAGCGAGCTTGCAGGACGAGTACG
GCCCGTTTGATGTTGCTGACGACTTGATACAACTGGTGCCTGACGAGGAG
GAGGAAAATAGATTGCGTCGGCGCATGAACGACCGAAGGAGTAAGGCGAA
GAAGGAGAGGAAGCGGAAGCAACGGGAAAAGCAAAATGACGAGGGTGGGA
AGGGAGAGGGGGAGCAAAAACTGGACGAGGCTGGGCAGCTGAAAAAGAAA
AAGAAGGCACACAAGGTGGCCAAGCTGCTGCTCACCAACGGAGGCGGAAA
GGAAGAAGCTGGGTCCTCGTCTCACGTGTCGAGTGCCCCTATGGGACTTT
CGACCTCGTCCTTGGCCACTGAGGCGCAACGAGCAGCAGAGAAAGAGATG
GCCTCGTCGTCGGCATTTGCCTCGCTCTTCGACAACGGGAACAGCAATAT
GGACAAGAACAGCATGTTTAGCGTTCGACGCTGA
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Synonyms
Publications