jgi.p|Nanoce1779_2|587359, mRNA_4650 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|587359
Unique Name	mRNA_4650
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1373
Alignment location	scaffold_9:300748..302120 +

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Properties


Property Name	Value
TranscriptId	587445
Track	FilteredModels2
ProteinId	587359

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:300748..302120 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587359	gene_4650	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587359	mRNA_4650-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4650	CDS_4650	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:300748..302120+
coding sequence from alignment at scaffold_9:300748..302120+

mRNA sequence

>mRNA_4650 ID=mRNA_4650|Name=jgi.p|Nanoce1779_2|587359|organism=Nannochloropsis oceanica|type=mRNA|length=1373bp
AACAGGATGGCGGGACGCCGACGGTCTCATACCAGCCTCATGCTACTAGT
GCCGGTAGTGGCGATGCTCTTGAACGTCGTCTTGGCCTTCCAACCTCGTG
TGGTGAGGTGCAGTCCCCAAGTAATGAGGAGCCGAGCGACGATCATGAGC
TTCGAGGGAGAGAGTATACACGCAGAGCAGGAGCCACAAGAAGGACACAT
GCTATCAGTATGGAAGGCCATGCGTACCAAGTTAAGTGTGGGCACGGAGA
GCTTGGGCAAGCTAGTGTTTGGGACGGGGGCAGCCGTGGTGGCAGGCTTT
GGAGCCCCGCCGAGCGTGGACCTGATGAGAGCTGTGAAAGACGGGCGGCA
AGACATGGGCACGGTCCTGCAAAGCATGGTACATCCCCCATCGGCCGAAG
CATTCAGCCTGAAGCCCTTCTCGCGGCGCTCGCTGAAGGAGAAGCTGGCC
TCGGTGCCGTGCTTCTTGGTCTGCAACCAACAGGGCTCGCCGTACCTGGT
GCCGCTTGAGACGGGCTTCGACGTGGGCGTCGTCTTCTTGGATCCCGCAG
ACGCAGAGGAAATGCTACAGAGCATGGTACAAAATCCGCAGACAGCCGAC
GCGCGGATACTGGTGATGGGCCTGGACAAGGGGCTGGAGCTGGTGCAGAG
CGAGCCCCGACGGAACGGGAACCATATGCTCGTCTTCCAGTTCTGCCCGA
GCGTGCAGCAGCTGAAGAACGCCAACGGCTTCCGTAAGGCCGGCTGGAAA
GCGATCCTAGACCAGCGGCCGGACAAGTGGCGTTTTGGGTTCAACCGGCA
GGGGGTGCGCAATGCGGGCTTGCCTGTGTTTTACTGCCCGGATCTGCGTA
TTGCCAAGGGCCGGGAGATGGTCAAGCCCATCTTCTTCTCAATGGAGGAC
CTGTACTACGCCTGGGACCGCAGCACGGCCGGTAAACATGGGGCGGCGCC
CGGAGACGTCAAGACGCTGGACTTGCTGCGGGTGGTGGAATGGATGTTGA
ATGAGCCCGAACAGACCAAGCTGGTTGGGTTTCACGCCAGCACCCAGGCA
CAGGACTACGTGGAGACGCAGCTGCGGGTCAAGGGCGGTAAGTCGCGACC
AGTAAGGGCCAGCTAAATTCGTGGGGCTTTTAAGGGCGAGCAACAGTTGT
GGGGCGAAGTTGAGGCGTTCAGGAAGGAGAGGGGGCGGACGTGGTGGGAG
TGGAAAGCAGGTAGATACCAAGGCAGTGAGAAGGACAGCGAAGACATGAC
GACAAAGCGGAGTGTGCCTAGCACACGTAACAACAACAACAACAACGACA
ACAACAACAATAATAGCACTAGAAGTTCAAATCGAAAGTAGACGGTAATC
GGCATCGATACAAGTATATCCAC

protein sequence of jgi.p|Nanoce1779_2|587359

>mRNA_4650-protein ID=mRNA_4650-protein|Name=jgi.p|Nanoce1779_2|587359|organism=Nannochloropsis oceanica|type=polypeptide|length=370bp
MAGRRRSHTSLMLLVPVVAMLLNVVLAFQPRVVRCSPQVMRSRATIMSFE
GESIHAEQEPQEGHMLSVWKAMRTKLSVGTESLGKLVFGTGAAVVAGFGA
PPSVDLMRAVKDGRQDMGTVLQSMVHPPSAEAFSLKPFSRRSLKEKLASV
PCFLVCNQQGSPYLVPLETGFDVGVVFLDPADAEEMLQSMVQNPQTADAR
ILVMGLDKGLELVQSEPRRNGNHMLVFQFCPSVQQLKNANGFRKAGWKAI
LDQRPDKWRFGFNRQGVRNAGLPVFYCPDLRIAKGREMVKPIFFSMEDLY
YAWDRSTAGKHGAAPGDVKTLDLLRVVEWMLNEPEQTKLVGFHASTQAQD
YVETQLRVKGGKSRPVRAS*

mRNA from alignment at scaffold_9:300748..302120+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4650 ID=mRNA_4650|Name=jgi.p|Nanoce1779_2|587359|organism=Nannochloropsis oceanica|type=mRNA|length=1373bp|location=Sequence derived from alignment at scaffold_9:300748..302120+ (Nannochloropsis oceanica)
AACAGGATGGCGGGACGCCGACGGTCTCATACCAGCCTCATGCTACTAGT
GCCGGTAGTGGCGATGCTCTTGAACGTCGTCTTGGCCTTCCAACCTCGTG
TGGTGAGGTGCAGTCCCCAAGTAATGAGGAGCCGAGCGACGATCATGAGC
TTCGAGGGAGAGAGTATACACGCAGAGCAGGAGCCACAAGAAGGACACAT
GCTATCAGTATGGAAGGCCATGCGTACCAAGTTAAGTGTGGGCACGGAGA
GCTTGGGCAAGCTAGTGTTTGGGACGGGGGCAGCCGTGGTGGCAGGCTTT
GGAGCCCCGCCGAGCGTGGACCTGATGAGAGCTGTGAAAGACGGGCGGCA
AGACATGGGCACGGTCCTGCAAAGCATGGTACATCCCCCATCGGCCGAAG
CATTCAGCCTGAAGCCCTTCTCGCGGCGCTCGCTGAAGGAGAAGCTGGCC
TCGGTGCCGTGCTTCTTGGTCTGCAACCAACAGGGCTCGCCGTACCTGGT
GCCGCTTGAGACGGGCTTCGACGTGGGCGTCGTCTTCTTGGATCCCGCAG
ACGCAGAGGAAATGCTACAGAGCATGGTACAAAATCCGCAGACAGCCGAC
GCGCGGATACTGGTGATGGGCCTGGACAAGGGGCTGGAGCTGGTGCAGAG
CGAGCCCCGACGGAACGGGAACCATATGCTCGTCTTCCAGTTCTGCCCGA
GCGTGCAGCAGCTGAAGAACGCCAACGGCTTCCGTAAGGCCGGCTGGAAA
GCGATCCTAGACCAGCGGCCGGACAAGTGGCGTTTTGGGTTCAACCGGCA
GGGGGTGCGCAATGCGGGCTTGCCTGTGTTTTACTGCCCGGATCTGCGTA
TTGCCAAGGGCCGGGAGATGGTCAAGCCCATCTTCTTCTCAATGGAGGAC
CTGTACTACGCCTGGGACCGCAGCACGGCCGGTAAACATGGGGCGGCGCC
CGGAGACGTCAAGACGCTGGACTTGCTGCGGGTGGTGGAATGGATGTTGA
ATGAGCCCGAACAGACCAAGCTGGTTGGGTTTCACGCCAGCACCCAGGCA
CAGGACTACGTGGAGACGCAGCTGCGGGTCAAGGGCGGTAAGTCGCGACC
AGTAAGGGCCAGCTAAATTCGTGGGGCTTTTAAGGGCGAGCAACAGTTGT
GGGGCGAAGTTGAGGCGTTCAGGAAGGAGAGGGGGCGGACGTGGTGGGAG
TGGAAAGCAGGTAGATACCAAGGCAGTGAGAAGGACAGCGAAGACATGAC
GACAAAGCGGAGTGTGCCTAGCACACGTAACAACAACAACAACAACGACA
ACAACAACAATAATAGCACTAGAAGTTCAAATCGAAAGTAGACGGTAATC
GGCATCGATACAAGTATATCCAC

Coding sequence (CDS) from alignment at scaffold_9:300748..302120+

>mRNA_4650 ID=mRNA_4650|Name=jgi.p|Nanoce1779_2|587359|organism=Nannochloropsis oceanica|type=CDS|length=1110bp|location=Sequence derived from alignment at scaffold_9:300748..302120+ (Nannochloropsis oceanica)
ATGGCGGGACGCCGACGGTCTCATACCAGCCTCATGCTACTAGTGCCGGT
AGTGGCGATGCTCTTGAACGTCGTCTTGGCCTTCCAACCTCGTGTGGTGA
GGTGCAGTCCCCAAGTAATGAGGAGCCGAGCGACGATCATGAGCTTCGAG
GGAGAGAGTATACACGCAGAGCAGGAGCCACAAGAAGGACACATGCTATC
AGTATGGAAGGCCATGCGTACCAAGTTAAGTGTGGGCACGGAGAGCTTGG
GCAAGCTAGTGTTTGGGACGGGGGCAGCCGTGGTGGCAGGCTTTGGAGCC
CCGCCGAGCGTGGACCTGATGAGAGCTGTGAAAGACGGGCGGCAAGACAT
GGGCACGGTCCTGCAAAGCATGGTACATCCCCCATCGGCCGAAGCATTCA
GCCTGAAGCCCTTCTCGCGGCGCTCGCTGAAGGAGAAGCTGGCCTCGGTG
CCGTGCTTCTTGGTCTGCAACCAACAGGGCTCGCCGTACCTGGTGCCGCT
TGAGACGGGCTTCGACGTGGGCGTCGTCTTCTTGGATCCCGCAGACGCAG
AGGAAATGCTACAGAGCATGGTACAAAATCCGCAGACAGCCGACGCGCGG
ATACTGGTGATGGGCCTGGACAAGGGGCTGGAGCTGGTGCAGAGCGAGCC
CCGACGGAACGGGAACCATATGCTCGTCTTCCAGTTCTGCCCGAGCGTGC
AGCAGCTGAAGAACGCCAACGGCTTCCGTAAGGCCGGCTGGAAAGCGATC
CTAGACCAGCGGCCGGACAAGTGGCGTTTTGGGTTCAACCGGCAGGGGGT
GCGCAATGCGGGCTTGCCTGTGTTTTACTGCCCGGATCTGCGTATTGCCA
AGGGCCGGGAGATGGTCAAGCCCATCTTCTTCTCAATGGAGGACCTGTAC
TACGCCTGGGACCGCAGCACGGCCGGTAAACATGGGGCGGCGCCCGGAGA
CGTCAAGACGCTGGACTTGCTGCGGGTGGTGGAATGGATGTTGAATGAGC
CCGAACAGACCAAGCTGGTTGGGTTTCACGCCAGCACCCAGGCACAGGAC
TACGTGGAGACGCAGCTGCGGGTCAAGGGCGGTAAGTCGCGACCAGTAAG
GGCCAGCTAA

Synonyms

Publications