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Properties
| Property Name | Value |
|---|
| TranscriptId | 554635 |
| Track | FilteredModels2 |
| ProteinId | 554549 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_9 | supercontig | scaffold_9:298563..300833 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4649 ID=mRNA_4649|Name=jgi.p|Nanoce1779_2|554549|organism=Nannochloropsis oceanica|type=mRNA|length=2052bp
GCCAAGACGACGTTCAAGAGCATCGCCACTACCGGCACTAGTAGCATGAG
GCTGGTATGAGACCGTCGGCGTCCCGCCATCCTGTTTTTCATAGAGGAGT
GGGTGAGGTAGGGTGTGTTGAAGGGAGGTGAGACTTGAGGCACGAGGGGC
TGGCTAGACAGGGACTGCCAAATCAGCGGTACCATGAGCTCTGAACCCGA
TGATTCTCGATATGATATGCGCAGGGTCAAGGCACATCAAATCAGACATG
CACATGCCAAGAGCCAACGGCTTCCTACGCAAAAAGACACAAAGGTGAAG
GTGCAAAGGAAAGGCCAGAGGAGACATGATCGCCGTGAAGGATTTTATGG
CCAGGCACGGCTGCTATTTTTATACCACGCATTTCCATGGCAAAGGACTC
AAGAGTCTCGCACGCTTGGTATCCAGAACACTCAATTTATCCAGTACTGC
GTATATTACACAGGTGGACTCGGGACTGGGAGCTTGGAGGGCAGGGCATC
TCGACGCACTGGAGTGCGCATCATCAGCAGGAGTTGAAGGACTGTTCGTC
ATTGCGTGGCCCACAGACCTAGGCATACCCATGGCACGACGCCCTGCTGC
ATGGGCACTTGCTTGTTGCGTGCTTGCAATAGATTGCGCGGCATTGTCGT
CACATGCTGCCTTCGTATCCCCTCTGCCCTCCTTCGCATGCGGGCGAGGA
CGAGGCAGGGCACACACGGCAGTGGTGGCGGAGAAGCCTTTGTCCACGCC
GTCCATCTACTCAGCCGCTGCAGGCCAAGAAGAATACGACACCCAATCAC
CAACAACTGAAGCAGCAGTCGTAGTAGTAGAAGTCAGGGGGGGAAAAACT
CGGGAGGAAGAGCGCAAGAGCAAGCACTTTGATTTCCTCAAGGAAGTCGC
TCAGAACAAGAAGCAAGCTCGGGCCAACAAGGCCAAATTTCGTGACCAAC
GAGATGAGTACTTGGAGGAAATGCGTAAGGCCTTCAAACTCATGCAGATA
AAAGAGCGGGAGGAGAGTGGCTTTAAGTGGGTCAAGCGGCCTAGGCGCGA
CCGAAAGATGCCTCTCTCGGAGCTCAAGCTGGGCGCCAAGCACGAGGCGG
TCGTCATCACTGTAAAGGAGCACGGAGCATACGTGGATTTCGGGGCCAAG
AAGGACGGTTTCGTACGTTTGCGTGACTTGAGCGACCGAGACTTTGTGCT
GGACGCGCGGGACTATTTGAGGCCGGGTGACACAGTCAATTTTTACGTCA
AGTACGTGAGCCCCGCCGAGGGTATTGTGACGGGCAGTTTGGTCCCAGCC
GAGATTGAGACGGAGAAGGAACTGGCAGCCCGAACGCCTTTGGCCGAGGT
CCGGGAGGCGGATGAGCTTTGGGGTGAGGTGACCAAGGTGTCGAATTACG
GGGCCTTCGTGGATGTGGGCGTTGAGGTGCAAGGCTTCCTTCACATTATC
TACTACCCCAAGCGGGCCCAGGGGGCTTTGACGCAGGATGTGTTTCGCCC
CGGTATGCGCCTAAGGGTGTGGGCTATGGAGGTGGACACGGAGAAGCGTC
GCTTGAAGCTGACGGCGGAACGGCCTCGTTCCCTCCCTCGGGTGGATTAC
TCTTGGTACATGGGTGGCTTTGAGGTGGCGGGATCAGAGGATGCACCTGG
ACGAGGATTCGTGGAGGAGATGGACTTTCAGCCGTCGTATGAGGATGGAC
AGGGGCTGCAGGCACGGGGCAGGGGAAAGCATGCGATGGAGAGGATGCAA
GAGTGGAATTTTGATGATGAGAGTGGGCGCAATGGGGGAATGAGGAGAAG
GGGGGAGGGGGAGAAGGAGGTGGTGCATAATTTGGATGCGGACCGGCAAG
GAATGGATAAAGAAGAGGCAGCATTGGCGCTGGAAGAGAAGGCGGGCCAA
AATGGCAGCCCTGCAAGTAAGTGAGCGGGGAGACCTCAGATTCATTCACA
TGTGAGTAGCGCAAGGCAGAGGGAAAAGAAGAAGAAAAAGAAGGGGCCAT
TTGATTTCAAAAAAGGTCAGCAGTATCTCCGTCTGCGAGAAGACAGAGCA
AG back to topprotein sequence of jgi.p|Nanoce1779_2|554549 >mRNA_4649-protein ID=mRNA_4649-protein|Name=jgi.p|Nanoce1779_2|554549|organism=Nannochloropsis oceanica|type=polypeptide|length=533bp
MIAVKDFMARHGCYFYTTHFHGKGLKSLARLVSRTLNLSSTAYITQVDSG
LGAWRAGHLDALECASSAGVEGLFVIAWPTDLGIPMARRPAAWALACCVL
AIDCAALSSHAAFVSPLPSFACGRGRGRAHTAVVAEKPLSTPSIYSAAAG
QEEYDTQSPTTEAAVVVVEVRGGKTREEERKSKHFDFLKEVAQNKKQARA
NKAKFRDQRDEYLEEMRKAFKLMQIKEREESGFKWVKRPRRDRKMPLSEL
KLGAKHEAVVITVKEHGAYVDFGAKKDGFVRLRDLSDRDFVLDARDYLRP
GDTVNFYVKYVSPAEGIVTGSLVPAEIETEKELAARTPLAEVREADELWG
EVTKVSNYGAFVDVGVEVQGFLHIIYYPKRAQGALTQDVFRPGMRLRVWA
MEVDTEKRRLKLTAERPRSLPRVDYSWYMGGFEVAGSEDAPGRGFVEEMD
FQPSYEDGQGLQARGRGKHAMERMQEWNFDDESGRNGGMRRRGEGEKEVV
HNLDADRQGMDKEEAALALEEKAGQNGSPASK* back to topmRNA from alignment at scaffold_9:298563..300833- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4649 ID=mRNA_4649|Name=jgi.p|Nanoce1779_2|554549|organism=Nannochloropsis oceanica|type=mRNA|length=2271bp|location=Sequence derived from alignment at scaffold_9:298563..300833- (Nannochloropsis oceanica)
GCCAAGACGACGTTCAAGAGCATCGCCACTACCGGCACTAGTAGCATGAG
GCTGGTATGAGACCGTCGGCGTCCCGCCATCCTGTTTTTCATAGAGGAGT
GGGTGAGGTAGGGTGTGTTGAAGGGAGGTGAGACTTGAGGCACGAGGGGC
TGGCTAGACAGGGACTGCCAAATCAGCGGTACCATGAGCTCTGAACCCGA
TGATTCTCGATATGATATGCGCAGGGTCAAGGCACATCAAATCAGACATG
CACATGCCAAGAGCCAACGGCTTCCTACGCAAAAAGACACAAAGGTGAAG
GTGCAAAGGAAAGGCCAGAGGAGACATGATCGCCGTGAAGGATTTTATGG
CCAGGCACGGCTGCTATTTTTATACCACGCATTTCCATGGCAAAGGACTC
AAGAGTCTCGCACGCTTGGTATCCAGAACACTCAATTTATCCAGTACTGC
GTATATTACACAGGTGGACTCGGGACTGGGAGCTTGGAGGGCAGGGCATC
TCGACGCACTGGAGTGCGCATCATCAGCAGGAGTTGAAGGACTGTTCGTC
ATTGCGTGGCCCACAGACCTAGGCATACCCATGGCACGACGCCCTGCTGC
ATGGGCACTTGCTTGTTGCGTGCTTGCAATAGATTGCGCGGCATTGTCGT
CACATGCTGCCTTCGTATCCCCTCTGCCCTCCTTCGCATGCGGGCGAGGA
CGAGGCAGGGCACACACGGCAGTGGTGGCGGAGAAGCCTTTGTCCACGCC
GTCCATCTACTCAGCCGCTGCAGGCCAAGAAGAATACGACACCCAATCAC
CAACAACTGAAGCAGCAGTCGTAGTAGTAGAAGTCAGGGGGGGAAAAACT
CGGGAGGAAGAGCGCAAGAGCAAGCACTTTGATTTCCTCAAGGTATGTAT
GTAGTGCACATGAGAAGGGAGGGAGGGCAAGGGCACATACTCCTCTAGAA
ACAACCACTTTCCATGTTCTGGGCGACTTTCGCAGTTGGTAAGAGTTGCC
ATCATGTAATGTTTTGGAAGGAGAGAGACCTGTCGGGCTACCATAGACAC
AAGATCTCACCAACTTCTCTTCCCTCGCCTCCCTGTACTATATTCTCCCC
ACACTTTGCAGGAAGTCGCTCAGAACAAGAAGCAAGCTCGGGCCAACAAG
GCCAAATTTCGTGACCAACGAGATGAGTACTTGGAGGAAATGCGTAAGGC
CTTCAAACTCATGCAGATAAAAGAGCGGGAGGAGAGTGGCTTTAAGTGGG
TCAAGCGGCCTAGGCGCGACCGAAAGATGCCTCTCTCGGAGCTCAAGCTG
GGCGCCAAGCACGAGGCGGTCGTCATCACTGTAAAGGAGCACGGAGCATA
CGTGGATTTCGGGGCCAAGAAGGACGGTTTCGTACGTTTGCGTGACTTGA
GCGACCGAGACTTTGTGCTGGACGCGCGGGACTATTTGAGGCCGGGTGAC
ACAGTCAATTTTTACGTCAAGTACGTGAGCCCCGCCGAGGGTATTGTGAC
GGGCAGTTTGGTCCCAGCCGAGATTGAGACGGAGAAGGAACTGGCAGCCC
GAACGCCTTTGGCCGAGGTCCGGGAGGCGGATGAGCTTTGGGGTGAGGTG
ACCAAGGTGTCGAATTACGGGGCCTTCGTGGATGTGGGCGTTGAGGTGCA
AGGCTTCCTTCACATTATCTACTACCCCAAGCGGGCCCAGGGGGCTTTGA
CGCAGGATGTGTTTCGCCCCGGTATGCGCCTAAGGGTGTGGGCTATGGAG
GTGGACACGGAGAAGCGTCGCTTGAAGCTGACGGCGGAACGGCCTCGTTC
CCTCCCTCGGGTGGATTACTCTTGGTACATGGGTGGCTTTGAGGTGGCGG
GATCAGAGGATGCACCTGGACGAGGATTCGTGGAGGAGATGGACTTTCAG
CCGTCGTATGAGGATGGACAGGGGCTGCAGGCACGGGGCAGGGGAAAGCA
TGCGATGGAGAGGATGCAAGAGTGGAATTTTGATGATGAGAGTGGGCGCA
ATGGGGGAATGAGGAGAAGGGGGGAGGGGGAGAAGGAGGTGGTGCATAAT
TTGGATGCGGACCGGCAAGGAATGGATAAAGAAGAGGCAGCATTGGCGCT
GGAAGAGAAGGCGGGCCAAAATGGCAGCCCTGCAAGTAAGTGAGCGGGGA
GACCTCAGATTCATTCACATGTGAGTAGCGCAAGGCAGAGGGAAAAGAAG
AAGAAAAAGAAGGGGCCATTTGATTTCAAAAAAGGTCAGCAGTATCTCCG
TCTGCGAGAAGACAGAGCAAG back to topCoding sequence (CDS) from alignment at scaffold_9:298563..300833- >mRNA_4649 ID=mRNA_4649|Name=jgi.p|Nanoce1779_2|554549|organism=Nannochloropsis oceanica|type=CDS|length=3198bp|location=Sequence derived from alignment at scaffold_9:298563..300833- (Nannochloropsis oceanica)
GAAGTCGCTCAGAACAAGAAGCAAGCTCGGGCCAACAAGGCCAAATTTCG
TGACCAACGAGATGAGTACTTGGAGGAAATGCGTAAGGCCTTCAAACTCA
TGCAGATAAAAGAGCGGGAGGAGAGTGGCTTTAAGTGGGTCAAGCGGCCT
AGGCGCGACCGAAAGATGCCTCTCTCGGAGCTCAAGCTGGGCGCCAAGCA
CGAGGCGGTCGTCATCACTGTAAAGGAGCACGGAGCATACGTGGATTTCG
GGGCCAAGAAGGACGGTTTCGTACGTTTGCGTGACTTGAGCGACCGAGAC
TTTGTGCTGGACGCGCGGGACTATTTGAGGCCGGGTGACACAGTCAATTT
TTACGTCAAGTACGTGAGCCCCGCCGAGGGTATTGTGACGGGCAGTTTGG
TCCCAGCCGAGATTGAGACGGAGAAGGAACTGGCAGCCCGAACGCCTTTG
GCCGAGGTCCGGGAGGCGGATGAGCTTTGGGGTGAGGTGACCAAGGTGTC
GAATTACGGGGCCTTCGTGGATGTGGGCGTTGAGGTGCAAGGCTTCCTTC
ACATTATCTACTACCCCAAGCGGGCCCAGGGGGCTTTGACGCAGGATGTG
TTTCGCCCCGGTATGCGCCTAAGGGTGTGGGCTATGGAGGTGGACACGGA
GAAGCGTCGCTTGAAGCTGACGGCGGAACGGCCTCGTTCCCTCCCTCGGG
TGGATTACTCTTGGTACATGGGTGGCTTTGAGGTGGCGGGATCAGAGGAT
GCACCTGGACGAGGATTCGTGGAGGAGATGGACTTTCAGCCGTCGTATGA
GGATGGACAGGGGCTGCAGGCACGGGGCAGGGGAAAGCATGCGATGGAGA
GGATGCAAGAGTGGAATTTTGATGATGAGAGTGGGCGCAATGGGGGAATG
AGGAGAAGGGGGGAGGGGGAGAAGGAGGTGGTGCATAATTTGGATGCGGA
CCGGCAAGGAATGGATAAAGAAGAGGCAGCATTGGCGCTGGAAGAGAAGG
CGGGCCAAAATGGCAGCCCTGCAAGTAAGTGAATGATCGCCGTGAAGGAT
TTTATGGCCAGGCACGGCTGCTATTTTTATACCACGCATTTCCATGGCAA
AGGACTCAAGAGTCTCGCACGCTTGGTATCCAGAACACTCAATTTATCCA
GTACTGCGTATATTACACAGGTGGACTCGGGACTGGGAGCTTGGAGGGCA
GGGCATCTCGACGCACTGGAGTGCGCATCATCAGCAGGAGTTGAAGGACT
GTTCGTCATTGCGTGGCCCACAGACCTAGGCATACCCATGGCACGACGCC
CTGCTGCATGGGCACTTGCTTGTTGCGTGCTTGCAATAGATTGCGCGGCA
TTGTCGTCACATGCTGCCTTCGTATCCCCTCTGCCCTCCTTCGCATGCGG
GCGAGGACGAGGCAGGGCACACACGGCAGTGGTGGCGGAGAAGCCTTTGT
CCACGCCGTCCATCTACTCAGCCGCTGCAGGCCAAGAAGAATACGACACC
CAATCACCAACAACTGAAGCAGCAGTCGTAGTAGTAGAAGTCAGGGGGGG
AAAAACTCGGGAGGAAGAGCGCAAGAGCAAGCACTTTGATTTCCTCAAGG
AAGTCGCTCAGAACAAGAAGCAAGCTCGGGCCAACAAGGCCAAATTTCGT
GACCAACGAGATGAGTACTTGGAGGAAATGCGTAAGGCCTTCAAACTCAT
GCAGATAAAAGAGCGGGAGGAGAGTGGCTTTAAGTGGGTCAAGCGGCCTA
GGCGCGACCGAAAGATGCCTCTCTCGGAGCTCAAGCTGGGCGCCAAGCAC
GAGGCGGTCGTCATCACTGTAAAGGAGCACGGAGCATACGTGGATTTCGG
GGCCAAGAAGGACGGTTTCGTACGTTTGCGTGACTTGAGCGACCGAGACT
TTGTGCTGGACGCGCGGGACTATTTGAGGCCGGGTGACACAGTCAATTTT
TACGTCAAGTACGTGAGCCCCGCCGAGGGTATTGTGACGGGCAGTTTGGT
CCCAGCCGAGATTGAGACGGAGAAGGAACTGGCAGCCCGAACGCCTTTGG
CCGAGGTCCGGGAGGCGGATGAGCTTTGGGGTGAGGTGACCAAGGTGTCG
AATTACGGGGCCTTCGTGGATGTGGGCGTTGAGGTGCAAGGCTTCCTTCA
CATTATCTACTACCCCAAGCGGGCCCAGGGGGCTTTGACGCAGGATGTGT
TTCGCCCCGGTATGCGCCTAAGGGTGTGGGCTATGGAGGTGGACACGGAG
AAGCGTCGCTTGAAGCTGACGGCGGAACGGCCTCGTTCCCTCCCTCGGGT
GGATTACTCTTGGTACATGGGTGGCTTTGAGGTGGCGGGATCAGAGGATG
CACCTGGACGAGGATTCGTGGAGGAGATGGACTTTCAGCCGTCGTATGAG
GATGGACAGGGGCTGCAGGCACGGGGCAGGGGAAAGCATGCGATGGAGAG
GATGCAAGAGTGGAATTTTGATGATGAGAGTGGGCGCAATGGGGGAATGA
GGAGAAGGGGGGAGGGGGAGAAGGAGGTGGTGCATAATTTGGATGCGGAC
CGGCAAGGAATGGATAAAGAAGAGGCAGCATTGGCGCTGGAAGAGAAGGC
GGGCCAAAATGGCAGCCCTGCAAGTAAGTGAATGATCGCCGTGAAGGATT
TTATGGCCAGGCACGGCTGCTATTTTTATACCACGCATTTCCATGGCAAA
GGACTCAAGAGTCTCGCACGCTTGGTATCCAGAACACTCAATTTATCCAG
TACTGCGTATATTACACAGGTGGACTCGGGACTGGGAGCTTGGAGGGCAG
GGCATCTCGACGCACTGGAGTGCGCATCATCAGCAGGAGTTGAAGGACTG
TTCGTCATTGCGTGGCCCACAGACCTAGGCATACCCATGGCACGACGCCC
TGCTGCATGGGCACTTGCTTGTTGCGTGCTTGCAATAGATTGCGCGGCAT
TGTCGTCACATGCTGCCTTCGTATCCCCTCTGCCCTCCTTCGCATGCGGG
CGAGGACGAGGCAGGGCACACACGGCAGTGGTGGCGGAGAAGCCTTTGTC
CACGCCGTCCATCTACTCAGCCGCTGCAGGCCAAGAAGAATACGACACCC
AATCACCAACAACTGAAGCAGCAGTCGTAGTAGTAGAAGTCAGGGGGGGA
AAAACTCGGGAGGAAGAGCGCAAGAGCAAGCACTTTGATTTCCTCAAG back to top
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