jgi.p|Nanoce1779_2|625370, mRNA_4647 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|625370
Unique NamemRNA_4647
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1323
Alignment locationscaffold_9:295406..296860 -

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Properties
Property NameValue
TranscriptId625456
TrackFilteredModels2
ProteinId625370
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:295406..296860 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|625370gene_4647Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|625370mRNA_4647-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4647CDS_4647Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4647 ID=mRNA_4647|Name=jgi.p|Nanoce1779_2|625370|organism=Nannochloropsis oceanica|type=mRNA|length=1323bp
ATCCCTTGGGCCAAGCCATTTCCCCGCTCCCTCCGATCCCCTTCCTCTAT
CACCTCGCCACCCAGGAGGTACGACGTTGGCAAGTTTGGTCGTAAACATC
TTGTGAGCAAGACTGTCAGCTCTCTGTACATTCAGTACAACGTTTTTGGC
CTTATTTTCTTGGTTATCAGGTCTGTCCCCCGTTCATACGACACAGATCA
ATCATGATGCTAGCCAGATCTTCCCTGACGGCCTCCAAGGCCCTTCTCCG
CCCGTCCACGATGCTGATGCGCTCTGCCAGCGGCAGTTCCAAAGTGGCGT
ACCGCCTCGTCTTGGTTAGGCATGGAGAGAGTGAGTGGAACAAGGAGAAC
CGCTTCACGGGCTGGTACGATGTGCAACTGTCGGAGAAAGGCATTGCTGA
GGCGAAGGAGGGCGGGCGGCTGCTGAAGGATGCGGGCTTTACGTTTGACA
AAGCCTACACATCTTTGCTGCGTCGGGCCATCAAGACCTGCTGGCTGGTG
CTGGAGGAAATGGACCTGATGTGGATCCCTACGCAGAAGGCATGGGAACT
GAACGAGCGGCATTATGGGGCATTGCAAGGCTTGGACAAGAATGAGACGG
TGGCAAAGCACGGCAAGGACCAGGTGCACATCTGGCGCCGCTCCTATGAC
ATCCCCCCTCCTCCTCTGGAGAAAAACAGCCCCCATTATCCCGGTAACGA
TGTTCGATACGGCACGCTGCTGCAAAACGAGACGCCCGTAACGGAGAGTT
TGAAGACGACCTTGGACAGGGTGGTGCCTTTCTGGGAGAATGTGATAAAG
CCAGACGTGGCGGCCGGCAAGAGCCTTATCATCGCAGCGCACGGCAACTC
TTTGCGGGCCCTGGTCAAGGAGCTGGATAACATTCCCGACGCGGATATCA
CGGAGTTAAATATACCCACGGGCACGCCGTTGGTGTACGAGTTGGACGCC
CGCTTCAAGCCTATCAAGCACAAGGACAGCATCGGGCCTCTGTCAGGTCA
TTATTTGGGGGACCAGGCTGCCATCAAGGCTCGTATTTTGGGAGTAAAGA
ATCAGACCAAGTAAGGAGTGAAGGATGGTTAGGTGTCGTCTTTATATTGT
ACGTGTCCTGTGATGTGGGGGAGTGTGGTCTGTGTGCTGTTTGTTGCTGC
TATCGAGTTGAAAGGACTGCTGCGGAAACGCCGCCTTAGCGTAGGACAGA
GAGGCTCTCAAAAGCATGGTTGCTGATAAGTGTTGGTCATAGTCTATAGA
GATGGAAATGAGGGAGCCGGACAAGAGTCACGAGGTGGTGAGAAAAGTGA
AGTGTTGAAACAAGCAAGTGCGA
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protein sequence of jgi.p|Nanoce1779_2|625370

>mRNA_4647-protein ID=mRNA_4647-protein|Name=jgi.p|Nanoce1779_2|625370|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MMLARSSLTASKALLRPSTMLMRSASGSSKVAYRLVLVRHGESEWNKENR
FTGWYDVQLSEKGIAEAKEGGRLLKDAGFTFDKAYTSLLRRAIKTCWLVL
EEMDLMWIPTQKAWELNERHYGALQGLDKNETVAKHGKDQVHIWRRSYDI
PPPPLEKNSPHYPGNDVRYGTLLQNETPVTESLKTTLDRVVPFWENVIKP
DVAAGKSLIIAAHGNSLRALVKELDNIPDADITELNIPTGTPLVYELDAR
FKPIKHKDSIGPLSGHYLGDQAAIKARILGVKNQTK*
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mRNA from alignment at scaffold_9:295406..296860-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4647 ID=mRNA_4647|Name=jgi.p|Nanoce1779_2|625370|organism=Nannochloropsis oceanica|type=mRNA|length=1455bp|location=Sequence derived from alignment at scaffold_9:295406..296860- (Nannochloropsis oceanica)
ATCCCTTGGGCCAAGCCATTTCCCCGCTCCCTCCGATCCCCTTCCTCTAT
CACCTCGCCACCCAGGAGGTACGACGTTGGCAAGTTTGGTCGTAAACATC
TTGTGAGCAAGACTGTCAGCTCTCTGTACATTCAGTACAACGTTTTTGGC
CTTATTTTCTTGGTTATCAGGTCTGTCCCCCGTTCATACGACACAGATCA
ATCATGATGCTAGCCAGATCTTCCCTGACGGCCTCCAAGGCCCTTCTCCG
CCCGTCCACGATGCTGATGCGCTCTGCCAGCGGCAGTTCCAAAGTGGCGT
ACCGCCTCGTCTTGGTTAGGTGCGTATGGTTTGTATGAAGGCACCTTTGT
GTGGGGTGTTGGTTGCTTTGTTATGTTGGCGAGCGATGTCGTGGGAGTCC
CAATGCGCTCCTTTGATCTCTCATTCCCAACCCACACTGTGTATGACACA
GGCATGGAGAGAGTGAGTGGAACAAGGAGAACCGCTTCACGGGCTGGTAC
GATGTGCAACTGTCGGAGAAAGGCATTGCTGAGGCGAAGGAGGGCGGGCG
GCTGCTGAAGGATGCGGGCTTTACGTTTGACAAAGCCTACACATCTTTGC
TGCGTCGGGCCATCAAGACCTGCTGGCTGGTGCTGGAGGAAATGGACCTG
ATGTGGATCCCTACGCAGAAGGCATGGGAACTGAACGAGCGGCATTATGG
GGCATTGCAAGGCTTGGACAAGAATGAGACGGTGGCAAAGCACGGCAAGG
ACCAGGTGCACATCTGGCGCCGCTCCTATGACATCCCCCCTCCTCCTCTG
GAGAAAAACAGCCCCCATTATCCCGGTAACGATGTTCGATACGGCACGCT
GCTGCAAAACGAGACGCCCGTAACGGAGAGTTTGAAGACGACCTTGGACA
GGGTGGTGCCTTTCTGGGAGAATGTGATAAAGCCAGACGTGGCGGCCGGC
AAGAGCCTTATCATCGCAGCGCACGGCAACTCTTTGCGGGCCCTGGTCAA
GGAGCTGGATAACATTCCCGACGCGGATATCACGGAGTTAAATATACCCA
CGGGCACGCCGTTGGTGTACGAGTTGGACGCCCGCTTCAAGCCTATCAAG
CACAAGGACAGCATCGGGCCTCTGTCAGGTCATTATTTGGGGGACCAGGC
TGCCATCAAGGCTCGTATTTTGGGAGTAAAGAATCAGACCAAGTAAGGAG
TGAAGGATGGTTAGGTGTCGTCTTTATATTGTACGTGTCCTGTGATGTGG
GGGAGTGTGGTCTGTGTGCTGTTTGTTGCTGCTATCGAGTTGAAAGGACT
GCTGCGGAAACGCCGCCTTAGCGTAGGACAGAGAGGCTCTCAAAAGCATG
GTTGCTGATAAGTGTTGGTCATAGTCTATAGAGATGGAAATGAGGGAGCC
GGACAAGAGTCACGAGGTGGTGAGAAAAGTGAAGTGTTGAAACAAGCAAG
TGCGA
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Coding sequence (CDS) from alignment at scaffold_9:295406..296860-

>mRNA_4647 ID=mRNA_4647|Name=jgi.p|Nanoce1779_2|625370|organism=Nannochloropsis oceanica|type=CDS|length=1722bp|location=Sequence derived from alignment at scaffold_9:295406..296860- (Nannochloropsis oceanica)
GCATGGAGAGAGTGAGTGGAACAAGGAGAACCGCTTCACGGGCTGGTACG
ATGTGCAACTGTCGGAGAAAGGCATTGCTGAGGCGAAGGAGGGCGGGCGG
CTGCTGAAGGATGCGGGCTTTACGTTTGACAAAGCCTACACATCTTTGCT
GCGTCGGGCCATCAAGACCTGCTGGCTGGTGCTGGAGGAAATGGACCTGA
TGTGGATCCCTACGCAGAAGGCATGGGAACTGAACGAGCGGCATTATGGG
GCATTGCAAGGCTTGGACAAGAATGAGACGGTGGCAAAGCACGGCAAGGA
CCAGGTGCACATCTGGCGCCGCTCCTATGACATCCCCCCTCCTCCTCTGG
AGAAAAACAGCCCCCATTATCCCGGTAACGATGTTCGATACGGCACGCTG
CTGCAAAACGAGACGCCCGTAACGGAGAGTTTGAAGACGACCTTGGACAG
GGTGGTGCCTTTCTGGGAGAATGTGATAAAGCCAGACGTGGCGGCCGGCA
AGAGCCTTATCATCGCAGCGCACGGCAACTCTTTGCGGGCCCTGGTCAAG
GAGCTGGATAACATTCCCGACGCGGATATCACGGAGTTAAATATACCCAC
GGGCACGCCGTTGGTGTACGAGTTGGACGCCCGCTTCAAGCCTATCAAGC
ACAAGGACAGCATCGGGCCTCTGTCAGGTCATTATTTGGGGGACCAGGCT
GCCATCAAGGCTCGTATTTTGGGAGTAAAGAATCAGACCAAGTAAATGAT
GCTAGCCAGATCTTCCCTGACGGCCTCCAAGGCCCTTCTCCGCCCGTCCA
CGATGCTGATGCGCTCTGCCAGCGGCAGTTCCAAAGTGGCGTACCGCCTC
GTCTTGGTTAGGCATGGAGAGAGTGAGTGGAACAAGGAGAACCGCTTCAC
GGGCTGGTACGATGTGCAACTGTCGGAGAAAGGCATTGCTGAGGCGAAGG
AGGGCGGGCGGCTGCTGAAGGATGCGGGCTTTACGTTTGACAAAGCCTAC
ACATCTTTGCTGCGTCGGGCCATCAAGACCTGCTGGCTGGTGCTGGAGGA
AATGGACCTGATGTGGATCCCTACGCAGAAGGCATGGGAACTGAACGAGC
GGCATTATGGGGCATTGCAAGGCTTGGACAAGAATGAGACGGTGGCAAAG
CACGGCAAGGACCAGGTGCACATCTGGCGCCGCTCCTATGACATCCCCCC
TCCTCCTCTGGAGAAAAACAGCCCCCATTATCCCGGTAACGATGTTCGAT
ACGGCACGCTGCTGCAAAACGAGACGCCCGTAACGGAGAGTTTGAAGACG
ACCTTGGACAGGGTGGTGCCTTTCTGGGAGAATGTGATAAAGCCAGACGT
GGCGGCCGGCAAGAGCCTTATCATCGCAGCGCACGGCAACTCTTTGCGGG
CCCTGGTCAAGGAGCTGGATAACATTCCCGACGCGGATATCACGGAGTTA
AATATACCCACGGGCACGCCGTTGGTGTACGAGTTGGACGCCCGCTTCAA
GCCTATCAAGCACAAGGACAGCATCGGGCCTCTGTCAGGTCATTATTTGG
GGGACCAGGCTGCCATCAAGGCTCGTATTTTGGGAGTAAAGAATCAGACC
AAGTAAATGATGCTAGCCAGATCTTCCCTGACGGCCTCCAAGGCCCTTCT
CCGCCCGTCCACGATGCTGATGCGCTCTGCCAGCGGCAGTTCCAAAGTGG
CGTACCGCCTCGTCTTGGTTAG
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Synonyms
Publications