jgi.p|Nanoce1779_2|527645, mRNA_4646 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|527645
Unique NamemRNA_4646
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1059
Alignment locationscaffold_9:293975..295033 +

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Properties
Property NameValue
TranscriptId527731
TrackFilteredModels2
ProteinId527645
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:293975..295033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527645gene_4646Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527645mRNA_4646-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4646CDS_4646Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4646 ID=mRNA_4646|Name=jgi.p|Nanoce1779_2|527645|organism=Nannochloropsis oceanica|type=mRNA|length=1059bp
ATGCGCATCCCCCTGGCCAAGGTGGCTCTGCCTCCCCGCGGTGTCCATCA
CCGGCAACGTGGCCTGGCAGAAAAGGGGGAGATCATCTTGAGAGATGTCT
ACCAGGATGTAGCCTACACAGGTGTGATTGGTATTGGGACCCCCCCCCGT
GAGTTCACCGTCATCTTCGATACGGGCAGCAGCGACCTGTGGGTGCCCTC
GGCCCTGTGCAAAGTATGTGGCCACCGCAATAAGTATAATTCAGACTCCT
CATCGACCTTCAAGAGGGATGGGGGTCGCTTTGAGATCACATACATGGGA
GGCCCTGTCTCCGGCTACCTGGCTGAGGACACGGTCACCTTAGGTGGTTA
TGCCGTAAGGAATCAGACGTTTGCCCAGATCACCAACCCCTTGGGCCTGG
GGACTAGCTACTTGGGAGGGGGATACGACGGCGTTTTGGGATTGGGATTT
GACGAGATTTCAGTGGCCAATACTGTAACACCTTTTCATAATTTGATCCA
GCAGCAGGGCAAGGCGCTGCCCGAGCCGGTGTTTGCTTTTTATTTGGGAG
GGGAGGGAGCGGGGCTGGGCGAGCTGACGGTGGGCGGCACCGACCCAAGT
CATTACTTAGGACAATTGCATTGGGTGCCCTTAGAGGAACCGCCGGGGTA
CTGGGCTGTTGGGTTGGATAGGGTGCATCTGGGAGCACAGGATTCTCAGA
GCAAGGCACACCTGGCAGTGATGGACTCGGGCGCATCCCTTATTATTGGG
CCGAAGCGGGACGTGGATGCCATAGCCGAGGGACTCGGGGCAACGGCCAC
GAATCGAATTTATACGGTGGATTGTGGAAAGAGGAAAACGATGCCGACAA
TAGAGTTTGTGGTCGATGGGCAGCCCTATGCTTTAAATGCGGACGATTAC
GTGATAGAGGATGGGCCTTTGTGCCTATTGGGGCTGCAGGGCGACGAGCA
CATGAGCGCTCAGTGGATACTGGGGGATGTATTTTTGCGAAAGTATTACT
CGGCCTATGATTATAAGAATAAGCGGGTTGGTTTGGCGTTGGCTACTAAG
GGCTCTTAA
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protein sequence of jgi.p|Nanoce1779_2|527645

>mRNA_4646-protein ID=mRNA_4646-protein|Name=jgi.p|Nanoce1779_2|527645|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MRIPLAKVALPPRGVHHRQRGLAEKGEIILRDVYQDVAYTGVIGIGTPPR
EFTVIFDTGSSDLWVPSALCKVCGHRNKYNSDSSSTFKRDGGRFEITYMG
GPVSGYLAEDTVTLGGYAVRNQTFAQITNPLGLGTSYLGGGYDGVLGLGF
DEISVANTVTPFHNLIQQQGKALPEPVFAFYLGGEGAGLGELTVGGTDPS
HYLGQLHWVPLEEPPGYWAVGLDRVHLGAQDSQSKAHLAVMDSGASLIIG
PKRDVDAIAEGLGATATNRIYTVDCGKRKTMPTIEFVVDGQPYALNADDY
VIEDGPLCLLGLQGDEHMSAQWILGDVFLRKYYSAYDYKNKRVGLALATK
GS*
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mRNA from alignment at scaffold_9:293975..295033+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4646 ID=mRNA_4646|Name=jgi.p|Nanoce1779_2|527645|organism=Nannochloropsis oceanica|type=mRNA|length=1059bp|location=Sequence derived from alignment at scaffold_9:293975..295033+ (Nannochloropsis oceanica)
ATGCGCATCCCCCTGGCCAAGGTGGCTCTGCCTCCCCGCGGTGTCCATCA
CCGGCAACGTGGCCTGGCAGAAAAGGGGGAGATCATCTTGAGAGATGTCT
ACCAGGATGTAGCCTACACAGGTGTGATTGGTATTGGGACCCCCCCCCGT
GAGTTCACCGTCATCTTCGATACGGGCAGCAGCGACCTGTGGGTGCCCTC
GGCCCTGTGCAAAGTATGTGGCCACCGCAATAAGTATAATTCAGACTCCT
CATCGACCTTCAAGAGGGATGGGGGTCGCTTTGAGATCACATACATGGGA
GGCCCTGTCTCCGGCTACCTGGCTGAGGACACGGTCACCTTAGGTGGTTA
TGCCGTAAGGAATCAGACGTTTGCCCAGATCACCAACCCCTTGGGCCTGG
GGACTAGCTACTTGGGAGGGGGATACGACGGCGTTTTGGGATTGGGATTT
GACGAGATTTCAGTGGCCAATACTGTAACACCTTTTCATAATTTGATCCA
GCAGCAGGGCAAGGCGCTGCCCGAGCCGGTGTTTGCTTTTTATTTGGGAG
GGGAGGGAGCGGGGCTGGGCGAGCTGACGGTGGGCGGCACCGACCCAAGT
CATTACTTAGGACAATTGCATTGGGTGCCCTTAGAGGAACCGCCGGGGTA
CTGGGCTGTTGGGTTGGATAGGGTGCATCTGGGAGCACAGGATTCTCAGA
GCAAGGCACACCTGGCAGTGATGGACTCGGGCGCATCCCTTATTATTGGG
CCGAAGCGGGACGTGGATGCCATAGCCGAGGGACTCGGGGCAACGGCCAC
GAATCGAATTTATACGGTGGATTGTGGAAAGAGGAAAACGATGCCGACAA
TAGAGTTTGTGGTCGATGGGCAGCCCTATGCTTTAAATGCGGACGATTAC
GTGATAGAGGATGGGCCTTTGTGCCTATTGGGGCTGCAGGGCGACGAGCA
CATGAGCGCTCAGTGGATACTGGGGGATGTATTTTTGCGAAAGTATTACT
CGGCCTATGATTATAAGAATAAGCGGGTTGGTTTGGCGTTGGCTACTAAG
GGCTCTTAA
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Coding sequence (CDS) from alignment at scaffold_9:293975..295033+

>mRNA_4646 ID=mRNA_4646|Name=jgi.p|Nanoce1779_2|527645|organism=Nannochloropsis oceanica|type=CDS|length=1059bp|location=Sequence derived from alignment at scaffold_9:293975..295033+ (Nannochloropsis oceanica)
ATGCGCATCCCCCTGGCCAAGGTGGCTCTGCCTCCCCGCGGTGTCCATCA
CCGGCAACGTGGCCTGGCAGAAAAGGGGGAGATCATCTTGAGAGATGTCT
ACCAGGATGTAGCCTACACAGGTGTGATTGGTATTGGGACCCCCCCCCGT
GAGTTCACCGTCATCTTCGATACGGGCAGCAGCGACCTGTGGGTGCCCTC
GGCCCTGTGCAAAGTATGTGGCCACCGCAATAAGTATAATTCAGACTCCT
CATCGACCTTCAAGAGGGATGGGGGTCGCTTTGAGATCACATACATGGGA
GGCCCTGTCTCCGGCTACCTGGCTGAGGACACGGTCACCTTAGGTGGTTA
TGCCGTAAGGAATCAGACGTTTGCCCAGATCACCAACCCCTTGGGCCTGG
GGACTAGCTACTTGGGAGGGGGATACGACGGCGTTTTGGGATTGGGATTT
GACGAGATTTCAGTGGCCAATACTGTAACACCTTTTCATAATTTGATCCA
GCAGCAGGGCAAGGCGCTGCCCGAGCCGGTGTTTGCTTTTTATTTGGGAG
GGGAGGGAGCGGGGCTGGGCGAGCTGACGGTGGGCGGCACCGACCCAAGT
CATTACTTAGGACAATTGCATTGGGTGCCCTTAGAGGAACCGCCGGGGTA
CTGGGCTGTTGGGTTGGATAGGGTGCATCTGGGAGCACAGGATTCTCAGA
GCAAGGCACACCTGGCAGTGATGGACTCGGGCGCATCCCTTATTATTGGG
CCGAAGCGGGACGTGGATGCCATAGCCGAGGGACTCGGGGCAACGGCCAC
GAATCGAATTTATACGGTGGATTGTGGAAAGAGGAAAACGATGCCGACAA
TAGAGTTTGTGGTCGATGGGCAGCCCTATGCTTTAAATGCGGACGATTAC
GTGATAGAGGATGGGCCTTTGTGCCTATTGGGGCTGCAGGGCGACGAGCA
CATGAGCGCTCAGTGGATACTGGGGGATGTATTTTTGCGAAAGTATTACT
CGGCCTATGATTATAAGAATAAGCGGGTTGGTTTGGCGTTGGCTACTAAG
GGCTCTTAA
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Synonyms
Publications