jgi.p|Nanoce1779_2|587342, mRNA_4645 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|587342
Unique Name	mRNA_4645
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2661
Alignment location	scaffold_9:290200..292860 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	587428
Track	FilteredModels2
ProteinId	587342

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:290200..292860 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587342	gene_4645	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587342	mRNA_4645-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4645	CDS_4645	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:290200..292860-
coding sequence from alignment at scaffold_9:290200..292860-

mRNA sequence

>mRNA_4645 ID=mRNA_4645|Name=jgi.p|Nanoce1779_2|587342|organism=Nannochloropsis oceanica|type=mRNA|length=2661bp
CGGTTCCCGGCAACCGCACTATGAAGAAACGATTGGGCCTCGTAATGTAC
CTTGCTTTAGCCTTACTTTTTGCGGCATTGCCTTGGTTGCTCTGGCATAA
GTTGCCTGTACATGACCATCCTGCCGATGCAATCGAAGGGCGCAAAAACA
TGCTCTTGTTTGCTCTGCCCGACAACGCCGTTGACGATCTGGCGGCTCCG
ACAAATCTCCGCGGCACCGTGACAGCAACGGCAGCATCAGTAGCAGATCA
TGAGTCCATGGGACCTGCACATCAGGCAGCCGGCGAGAAACTACAGAATC
TGGCTCCCGCCAATCAAGTCCCGTTGCCCTCTACCAAGGAGAAACGTACC
GCAATGGAAGAGAGGAAAATTGCGGTAGAAGAAGACGAGGAGGAAGAAGC
TTTGGAGAGAGAATTAGATCAAGAAGAGGATGCATTGCTCGAAATGGAAG
AAAAGCAGCAGGAAGAACAGGAAGAACAAGAAGAAGAAGAAGAAGAAGAA
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGCCGCTTGA
ATACCTGGAGCAAGACGATCCAGACTTGGCAGCGGCTATGGAGAGTGAGT
TTGAGGAAGAGAGGCAAGCTGCTTTTGGGGACATTGATGATGACATGGTC
GACGACCCCGAGGAGGACAAAGGTGCGGCTTATGCTAAACCTGCTGTTGC
TTTTGGGGCCAGTGGTGGTAAAGCAGCAAGTGTCAAGGTTTCGAAGAAGA
TGAAGGCAGCAAAAGTATTAGTTTCACCTGCCCGCACGACGAGGAAGAAG
GGTCTCGACGATACATTTGTGCGCTTTGCACCACAAGACCCGCGTACGGA
CAAGGCACTGGCTACTATACGACGAGAACGTGTCAAGATGGGGATGAAGC
GGGCTTGGGACGCCTACCGCGCAAACGCCTGGGGAAAAGACACGATCTTG
CCACTGTCCAAGGCCGCTGCCGACAGGTGGGGCGGAATGGCGATGACGAT
GCTCGACTCTCTGTCGACGCTGTGGGTGATGGGGCTGAAGGACGACTTTA
TGGAGGCCCGGGACTGGATTGCAGAGAACTTGAGCTTCAAGGATGTCGGT
CACATTTCTGTTTTTGAAACCAACATTCGTGCGCTGGCCGGCCTCCTGTC
CGCTTACGACCTTTCTAGAGACAAGGTATTTCTCGACAGGGCCGTGGAGC
TGGGCGATCTCCTGCTGCCGGCTTTTGACTCCAAAACCGGCTTCCCTATC
AATGGCCTAACTCTCTATTCGGGCCAGCACAGCGGTTCCCGCTCAGCTTG
CCTCGCTGAGTTTGGAACTATGCAAATTGAGTTCCGTTACCTGAGCCACG
CGACCGGCAATCCTATTTACGCGGAAAAGGCCATGTATGTGTTTGAGAAG
ATGCACGATGAAAGCGCCAAAGTGGCCAAGCACGGAGTATTCAAATTGGA
TTATAATGCTGATTCGGGTGTGTGGGGCGGAGACCACTATTCAGTCGCAG
CACGAGGCGATTCCTTTTATGAGTACTTGCTCAAGACTTGGTTACAGGGC
AATAAGAAGGAAACCTGGCTCCGCGAAATGTTCGACGAGTCCGTCGACGG
GATCGAGGAGCTGCTGCTCGTTCGTGGGCCAGGCGGTCGTTTGTATATCG
CCAACAACGACAACGGGCACCAATCGGACAATATGGAGCATTTGGCTTGC
TTCTATCCCGGCACGCTGGCCTTGGCTGCCGCCACACTCGAGACCAAGGG
CGATGTCACGTTGGAGAAGCGCGCAGCGCATTACATGGACCTGGCACGGG
AGTTGGGGGAGACCTGCTATCAGTTCACTAGCTCTCACGCAACGGGTTTG
GCTCCCGATTCCGTGACCTTTGATCGAAAGGGCATGCCTCAGGCGTCTGA
CCCCCGCTACATTCTGCGACCGGAGATTGCTGAGTCCATGTACTACCTGC
ACTTGCTTGATGGGAATCCTAAGTGGCGGGAATACGGGGCGAACATATTC
GAGGCCATCGATACGTACTGTCGGACCGACGAGGCTTACGCGCAGGTCCG
TCTTATGGCCACTCCTCCTGGCTACAAGAAGCACAAGACTGCGCTGCGTA
ATGGTGATACTTCCTCGACAATGGAGGCGGCAGTTAAGGGCGAGGAGGAG
ACGACTAAAACAGGCCCAGACGTTAAGCTGGTGAGTCATGAGGATGATAT
GGAATCTTTCTTCTTGGCTGAAACTCTCAAATACCTCTATCTCATCCAAG
AGACGGAGCCTGGGGAGGTGGATCTCTCGCGTCAGGTATTTAATACTGAG
GCACATCCTCTCCGTATTTTTAGTGATCGAAGCTTTTCAGATGTGTAAGA
GCACGGTGGCCTTGTCTTTGGCCCCAGAAAGAGAAATAAAATCAGATGGA
GTAGGAGTGATTACCATTTTTGCCAGACACCAAGCACTCGCTGGAAAAGC
AGGGTGAAGCGAAAATACGAGCGAGGGGAGGGCGCTTTATGTGCATTACA
ATATTTTTGTTGGTTCATCTTAGTCCTGCTTACTGCGACTGCGGTTCGAA
ATCGAGCGTCAAATATAAACAAGTTTAAATTAGAAAAGTGGTGGTTAAGG
TGAAACGATACAGGGTGCGATGACAAATGATAGACTTCTTCTTCTTTTTT
GTTTACTAAAT

protein sequence of jgi.p|Nanoce1779_2|587342

>mRNA_4645-protein ID=mRNA_4645-protein|Name=jgi.p|Nanoce1779_2|587342|organism=Nannochloropsis oceanica|type=polypeptide|length=776bp
MKKRLGLVMYLALALLFAALPWLLWHKLPVHDHPADAIEGRKNMLLFALP
DNAVDDLAAPTNLRGTVTATAASVADHESMGPAHQAAGEKLQNLAPANQV
PLPSTKEKRTAMEERKIAVEEDEEEEALERELDQEEDALLEMEEKQQEEQ
EEQEEEEEEEEEEEEEEEEEEEEEPLEYLEQDDPDLAAAMESEFEEERQA
AFGDIDDDMVDDPEEDKGAAYAKPAVAFGASGGKAASVKVSKKMKAAKVL
VSPARTTRKKGLDDTFVRFAPQDPRTDKALATIRRERVKMGMKRAWDAYR
ANAWGKDTILPLSKAAADRWGGMAMTMLDSLSTLWVMGLKDDFMEARDWI
AENLSFKDVGHISVFETNIRALAGLLSAYDLSRDKVFLDRAVELGDLLLP
AFDSKTGFPINGLTLYSGQHSGSRSACLAEFGTMQIEFRYLSHATGNPIY
AEKAMYVFEKMHDESAKVAKHGVFKLDYNADSGVWGGDHYSVAARGDSFY
EYLLKTWLQGNKKETWLREMFDESVDGIEELLLVRGPGGRLYIANNDNGH
QSDNMEHLACFYPGTLALAAATLETKGDVTLEKRAAHYMDLARELGETCY
QFTSSHATGLAPDSVTFDRKGMPQASDPRYILRPEIAESMYYLHLLDGNP
KWREYGANIFEAIDTYCRTDEAYAQVRLMATPPGYKKHKTALRNGDTSST
MEAAVKGEEETTKTGPDVKLVSHEDDMESFFLAETLKYLYLIQETEPGEV
DLSRQVFNTEAHPLRIFSDRSFSDV*

mRNA from alignment at scaffold_9:290200..292860-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4645 ID=mRNA_4645|Name=jgi.p|Nanoce1779_2|587342|organism=Nannochloropsis oceanica|type=mRNA|length=2661bp|location=Sequence derived from alignment at scaffold_9:290200..292860- (Nannochloropsis oceanica)
CGGTTCCCGGCAACCGCACTATGAAGAAACGATTGGGCCTCGTAATGTAC
CTTGCTTTAGCCTTACTTTTTGCGGCATTGCCTTGGTTGCTCTGGCATAA
GTTGCCTGTACATGACCATCCTGCCGATGCAATCGAAGGGCGCAAAAACA
TGCTCTTGTTTGCTCTGCCCGACAACGCCGTTGACGATCTGGCGGCTCCG
ACAAATCTCCGCGGCACCGTGACAGCAACGGCAGCATCAGTAGCAGATCA
TGAGTCCATGGGACCTGCACATCAGGCAGCCGGCGAGAAACTACAGAATC
TGGCTCCCGCCAATCAAGTCCCGTTGCCCTCTACCAAGGAGAAACGTACC
GCAATGGAAGAGAGGAAAATTGCGGTAGAAGAAGACGAGGAGGAAGAAGC
TTTGGAGAGAGAATTAGATCAAGAAGAGGATGCATTGCTCGAAATGGAAG
AAAAGCAGCAGGAAGAACAGGAAGAACAAGAAGAAGAAGAAGAAGAAGAA
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGCCGCTTGA
ATACCTGGAGCAAGACGATCCAGACTTGGCAGCGGCTATGGAGAGTGAGT
TTGAGGAAGAGAGGCAAGCTGCTTTTGGGGACATTGATGATGACATGGTC
GACGACCCCGAGGAGGACAAAGGTGCGGCTTATGCTAAACCTGCTGTTGC
TTTTGGGGCCAGTGGTGGTAAAGCAGCAAGTGTCAAGGTTTCGAAGAAGA
TGAAGGCAGCAAAAGTATTAGTTTCACCTGCCCGCACGACGAGGAAGAAG
GGTCTCGACGATACATTTGTGCGCTTTGCACCACAAGACCCGCGTACGGA
CAAGGCACTGGCTACTATACGACGAGAACGTGTCAAGATGGGGATGAAGC
GGGCTTGGGACGCCTACCGCGCAAACGCCTGGGGAAAAGACACGATCTTG
CCACTGTCCAAGGCCGCTGCCGACAGGTGGGGCGGAATGGCGATGACGAT
GCTCGACTCTCTGTCGACGCTGTGGGTGATGGGGCTGAAGGACGACTTTA
TGGAGGCCCGGGACTGGATTGCAGAGAACTTGAGCTTCAAGGATGTCGGT
CACATTTCTGTTTTTGAAACCAACATTCGTGCGCTGGCCGGCCTCCTGTC
CGCTTACGACCTTTCTAGAGACAAGGTATTTCTCGACAGGGCCGTGGAGC
TGGGCGATCTCCTGCTGCCGGCTTTTGACTCCAAAACCGGCTTCCCTATC
AATGGCCTAACTCTCTATTCGGGCCAGCACAGCGGTTCCCGCTCAGCTTG
CCTCGCTGAGTTTGGAACTATGCAAATTGAGTTCCGTTACCTGAGCCACG
CGACCGGCAATCCTATTTACGCGGAAAAGGCCATGTATGTGTTTGAGAAG
ATGCACGATGAAAGCGCCAAAGTGGCCAAGCACGGAGTATTCAAATTGGA
TTATAATGCTGATTCGGGTGTGTGGGGCGGAGACCACTATTCAGTCGCAG
CACGAGGCGATTCCTTTTATGAGTACTTGCTCAAGACTTGGTTACAGGGC
AATAAGAAGGAAACCTGGCTCCGCGAAATGTTCGACGAGTCCGTCGACGG
GATCGAGGAGCTGCTGCTCGTTCGTGGGCCAGGCGGTCGTTTGTATATCG
CCAACAACGACAACGGGCACCAATCGGACAATATGGAGCATTTGGCTTGC
TTCTATCCCGGCACGCTGGCCTTGGCTGCCGCCACACTCGAGACCAAGGG
CGATGTCACGTTGGAGAAGCGCGCAGCGCATTACATGGACCTGGCACGGG
AGTTGGGGGAGACCTGCTATCAGTTCACTAGCTCTCACGCAACGGGTTTG
GCTCCCGATTCCGTGACCTTTGATCGAAAGGGCATGCCTCAGGCGTCTGA
CCCCCGCTACATTCTGCGACCGGAGATTGCTGAGTCCATGTACTACCTGC
ACTTGCTTGATGGGAATCCTAAGTGGCGGGAATACGGGGCGAACATATTC
GAGGCCATCGATACGTACTGTCGGACCGACGAGGCTTACGCGCAGGTCCG
TCTTATGGCCACTCCTCCTGGCTACAAGAAGCACAAGACTGCGCTGCGTA
ATGGTGATACTTCCTCGACAATGGAGGCGGCAGTTAAGGGCGAGGAGGAG
ACGACTAAAACAGGCCCAGACGTTAAGCTGGTGAGTCATGAGGATGATAT
GGAATCTTTCTTCTTGGCTGAAACTCTCAAATACCTCTATCTCATCCAAG
AGACGGAGCCTGGGGAGGTGGATCTCTCGCGTCAGGTATTTAATACTGAG
GCACATCCTCTCCGTATTTTTAGTGATCGAAGCTTTTCAGATGTGTAAGA
GCACGGTGGCCTTGTCTTTGGCCCCAGAAAGAGAAATAAAATCAGATGGA
GTAGGAGTGATTACCATTTTTGCCAGACACCAAGCACTCGCTGGAAAAGC
AGGGTGAAGCGAAAATACGAGCGAGGGGAGGGCGCTTTATGTGCATTACA
ATATTTTTGTTGGTTCATCTTAGTCCTGCTTACTGCGACTGCGGTTCGAA
ATCGAGCGTCAAATATAAACAAGTTTAAATTAGAAAAGTGGTGGTTAAGG
TGAAACGATACAGGGTGCGATGACAAATGATAGACTTCTTCTTCTTTTTT
GTTTACTAAAT

Coding sequence (CDS) from alignment at scaffold_9:290200..292860-

>mRNA_4645 ID=mRNA_4645|Name=jgi.p|Nanoce1779_2|587342|organism=Nannochloropsis oceanica|type=CDS|length=2328bp|location=Sequence derived from alignment at scaffold_9:290200..292860- (Nannochloropsis oceanica)
ATGAAGAAACGATTGGGCCTCGTAATGTACCTTGCTTTAGCCTTACTTTT
TGCGGCATTGCCTTGGTTGCTCTGGCATAAGTTGCCTGTACATGACCATC
CTGCCGATGCAATCGAAGGGCGCAAAAACATGCTCTTGTTTGCTCTGCCC
GACAACGCCGTTGACGATCTGGCGGCTCCGACAAATCTCCGCGGCACCGT
GACAGCAACGGCAGCATCAGTAGCAGATCATGAGTCCATGGGACCTGCAC
ATCAGGCAGCCGGCGAGAAACTACAGAATCTGGCTCCCGCCAATCAAGTC
CCGTTGCCCTCTACCAAGGAGAAACGTACCGCAATGGAAGAGAGGAAAAT
TGCGGTAGAAGAAGACGAGGAGGAAGAAGCTTTGGAGAGAGAATTAGATC
AAGAAGAGGATGCATTGCTCGAAATGGAAGAAAAGCAGCAGGAAGAACAG
GAAGAACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA
AGAAGAAGAAGAAGAAGAAGAGCCGCTTGAATACCTGGAGCAAGACGATC
CAGACTTGGCAGCGGCTATGGAGAGTGAGTTTGAGGAAGAGAGGCAAGCT
GCTTTTGGGGACATTGATGATGACATGGTCGACGACCCCGAGGAGGACAA
AGGTGCGGCTTATGCTAAACCTGCTGTTGCTTTTGGGGCCAGTGGTGGTA
AAGCAGCAAGTGTCAAGGTTTCGAAGAAGATGAAGGCAGCAAAAGTATTA
GTTTCACCTGCCCGCACGACGAGGAAGAAGGGTCTCGACGATACATTTGT
GCGCTTTGCACCACAAGACCCGCGTACGGACAAGGCACTGGCTACTATAC
GACGAGAACGTGTCAAGATGGGGATGAAGCGGGCTTGGGACGCCTACCGC
GCAAACGCCTGGGGAAAAGACACGATCTTGCCACTGTCCAAGGCCGCTGC
CGACAGGTGGGGCGGAATGGCGATGACGATGCTCGACTCTCTGTCGACGC
TGTGGGTGATGGGGCTGAAGGACGACTTTATGGAGGCCCGGGACTGGATT
GCAGAGAACTTGAGCTTCAAGGATGTCGGTCACATTTCTGTTTTTGAAAC
CAACATTCGTGCGCTGGCCGGCCTCCTGTCCGCTTACGACCTTTCTAGAG
ACAAGGTATTTCTCGACAGGGCCGTGGAGCTGGGCGATCTCCTGCTGCCG
GCTTTTGACTCCAAAACCGGCTTCCCTATCAATGGCCTAACTCTCTATTC
GGGCCAGCACAGCGGTTCCCGCTCAGCTTGCCTCGCTGAGTTTGGAACTA
TGCAAATTGAGTTCCGTTACCTGAGCCACGCGACCGGCAATCCTATTTAC
GCGGAAAAGGCCATGTATGTGTTTGAGAAGATGCACGATGAAAGCGCCAA
AGTGGCCAAGCACGGAGTATTCAAATTGGATTATAATGCTGATTCGGGTG
TGTGGGGCGGAGACCACTATTCAGTCGCAGCACGAGGCGATTCCTTTTAT
GAGTACTTGCTCAAGACTTGGTTACAGGGCAATAAGAAGGAAACCTGGCT
CCGCGAAATGTTCGACGAGTCCGTCGACGGGATCGAGGAGCTGCTGCTCG
TTCGTGGGCCAGGCGGTCGTTTGTATATCGCCAACAACGACAACGGGCAC
CAATCGGACAATATGGAGCATTTGGCTTGCTTCTATCCCGGCACGCTGGC
CTTGGCTGCCGCCACACTCGAGACCAAGGGCGATGTCACGTTGGAGAAGC
GCGCAGCGCATTACATGGACCTGGCACGGGAGTTGGGGGAGACCTGCTAT
CAGTTCACTAGCTCTCACGCAACGGGTTTGGCTCCCGATTCCGTGACCTT
TGATCGAAAGGGCATGCCTCAGGCGTCTGACCCCCGCTACATTCTGCGAC
CGGAGATTGCTGAGTCCATGTACTACCTGCACTTGCTTGATGGGAATCCT
AAGTGGCGGGAATACGGGGCGAACATATTCGAGGCCATCGATACGTACTG
TCGGACCGACGAGGCTTACGCGCAGGTCCGTCTTATGGCCACTCCTCCTG
GCTACAAGAAGCACAAGACTGCGCTGCGTAATGGTGATACTTCCTCGACA
ATGGAGGCGGCAGTTAAGGGCGAGGAGGAGACGACTAAAACAGGCCCAGA
CGTTAAGCTGGTGAGTCATGAGGATGATATGGAATCTTTCTTCTTGGCTG
AAACTCTCAAATACCTCTATCTCATCCAAGAGACGGAGCCTGGGGAGGTG
GATCTCTCGCGTCAGGTATTTAATACTGAGGCACATCCTCTCCGTATTTT
TAGTGATCGAAGCTTTTCAGATGTGTAA

Synonyms

Publications