jgi.p|Nanoce1779_2|623108, mRNA_4644 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|623108
Unique Name	mRNA_4644
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1197
Alignment location	scaffold_9:285967..289995 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	623194
Track	FilteredModels2
ProteinId	623108

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:285967..289995 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|623108	gene_4644	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|623108	mRNA_4644-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4644	CDS_4644	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:285967..289995+
coding sequence from alignment at scaffold_9:285967..289995+

mRNA sequence

>mRNA_4644 ID=mRNA_4644|Name=jgi.p|Nanoce1779_2|623108|organism=Nannochloropsis oceanica|type=mRNA|length=1197bp
ATGACGAGGTACAGCGGGAAGAGGGACAAGGGCATTCGATCGTACTACCT
GAGTAAGATTGACGAGCTCGAGCTGATTGTGCGCGAGCGGACACAGAATC
TGCAGCGGCTCAAGGCCCAGAGAAACGAGTGGAACGCCAAGGTACGGCTT
CTGCGGGAGGAGCTGCACCACTTGCAGGAGCCCGGTTCGTATGTGGGGGA
GGTAGTCAAGGCCATGGGCAAGACCAAGGTCCTTGTCAAGGTCAATCCCG
AGGGCAAGTATGTGGTAGATCTGGACAAGGACGTAGATATTAACATGTGC
ACGCCCAATACCCGGGTGGCGCTGCGTAATGACTCGTACACCCTGCACAA
GATTTTGCCGACCAAGGTGGACCCGTTGGTGTCGCTGATGAAGGTGGAAG
CCGTGCCTGACTCAACGTATGACATGATTGGGGGTCTAGATAAGCAGGTG
CGGGAGATCAAGGAGGTGATTGAGCTACCTATCAAGCATCCGGAGCTTTT
CGAGGCTTTGGGGGTGGCGCAGCCCAAGGGCGTGTTATTGTACGGGCCCC
CGGGTACCGGCAAAACACTTCTGGCCCGCGCGGTGGCCCACCACACGGAC
TGCACCTTCATTCGTGTGTCTGGGGCGGAGCTGGTGCAGAAATATATTGG
GGAGGGGTCTCGGATGGTGCGTGAGTTGTTTGTGATGGCCCGTGAGGCTG
CTCCATCCATTATTTTCATGGATGAGATCGACTCGATCGGGTCGTCGCGC
GTGGACGGGAGCGAGGGTGGGGACTCGGAGGTGCAGCGGACGATGTTGGA
GTTGCTGAATCAGTTGGATGGATTCGAGCCAGCTCAGAACATAAAGGTAG
TGATGGCCACGAATCGCATTGACATCTTGGACGCGGCCTTGCTCCGCCCT
GGCCGTATTGATCGAAAGATCGAGTTTCCGCACCCGACCATGGCGTCAAG
GTTAGATATTTTAAGCATCCATAGTCGGAAGATGAATTTGATGCGTGGGA
TAAACTTAAAGGGAATCGCAGAGAAGATGCCGAATGCCTCCGGGGCGGAG
TGCAAGGCGGTCTGTACGGAGGCGGGTATGTTCGCCTTGCGTGAGCGGAG
GATACATGTTACGCAGGAAGACTTCGAGATGGCGGTAGCAAAGGTGATGA
AGAAGGACAGTGACTCCAATATGTCCATGCGCAAGCTTTGGAAGTAA

protein sequence of jgi.p|Nanoce1779_2|623108

>mRNA_4644-protein ID=mRNA_4644-protein|Name=jgi.p|Nanoce1779_2|623108|organism=Nannochloropsis oceanica|type=polypeptide|length=399bp
MTRYSGKRDKGIRSYYLSKIDELELIVRERTQNLQRLKAQRNEWNAKVRL
LREELHHLQEPGSYVGEVVKAMGKTKVLVKVNPEGKYVVDLDKDVDINMC
TPNTRVALRNDSYTLHKILPTKVDPLVSLMKVEAVPDSTYDMIGGLDKQV
REIKEVIELPIKHPELFEALGVAQPKGVLLYGPPGTGKTLLARAVAHHTD
CTFIRVSGAELVQKYIGEGSRMVRELFVMAREAAPSIIFMDEIDSIGSSR
VDGSEGGDSEVQRTMLELLNQLDGFEPAQNIKVVMATNRIDILDAALLRP
GRIDRKIEFPHPTMASRLDILSIHSRKMNLMRGINLKGIAEKMPNASGAE
CKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKDSDSNMSMRKLWK*

mRNA from alignment at scaffold_9:285967..289995+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4644 ID=mRNA_4644|Name=jgi.p|Nanoce1779_2|623108|organism=Nannochloropsis oceanica|type=mRNA|length=4029bp|location=Sequence derived from alignment at scaffold_9:285967..289995+ (Nannochloropsis oceanica)
ATGACGAGGTACAGCGGGAAGAGGGTGAGTGGGGTAAGGAGGGGGAACAG
GAGGGTAGTGACGGCAAGGTGCCGGCAGGGACCTTGACACCAGACGTGTG
AGTAGCAGCCAGTCAAGGCATTGAAAGCAGCCCAATCTGTGAAACGGCGC
AAAAATCTCAGTGTTCATCTAGTTTCTTTCATGTTTATTTCTACCGCCTA
TTTCTGTCTCCTTACTTCCCAATGCAAAAGTCCCTGAAAATGACATCCAA
GACCTCTTCCACGTCCACCGCCCCCGTAATCCGCCCCAGCTCCGTGGACG
CGATTCGCAACTCCTCCGCCGCCACATCAAGCCCTAGATTCCGGTCGTCC
AAGAAAGAAGTCAAGGCCTCCACACACTTCTCAACATGCACGCGGTGCCT
CGCCCGTGTGATGACAGGGACCTCATTTTGTTCCTCCTCTCCCCCCCCCC
GGTCAAGCAGAGCCTCCAGCCTGGCCTGCAACCCGCCCAACATCTCTTCC
ACCCCCTCCCCCGTCGAGCACGACACAAAGAATGCCGACGCCCTTCCTCT
TGACCTCGCTCCATTCCCCACCCCGCCTGCTCCAGCGAGGGAGCGCACGG
CCAAGTCACTTCCCTCCGCGACCGCGTCCATCTTATTCACCACCAGCAGG
AGGCCATCCTTCTCCTCCACCGCTGCCAGCACCTCACTCAACGCCTTCGG
GGGGGCTCCGGCCGCAAACGGGCCTACCCCTGCCAATGACGCCAGACCTT
CGCTCTCCAGCGAGCCTGAGGCATCCAGTACCACCAACGTCAGCTGGGCT
TGCTCCGCTGCTTCTCGTGCCCGACGAATCCCCTCCTGCTCAACCTCATC
CGCAGCCGCTTCTCTAATTCCTGCCGTATCGCTCACCAGTACCGGCAGGC
CTGCGAGCTCTAACTGCACCTCAACCACATCTCGGGTAGTGCCCGCTATA
GGAGACACAATGGCAGCCGGCCTTTTCGCCAACAGATTTAAAAGCGTGCT
CTTCCCCGCATTCGGCGGGCCCACTATTGCCACCCGAATCCCCGACCTGA
TGACCTCCCCTCGGTTGCCGTCTGCCAGGTGCCGCCGCATTTCCTCTCGG
AGCGTCGCTGCCCGAGGACGAATGGCGTCATAGGCAGCCTCGTCCACATC
CAACTCGTCATCCCCAAAATCAATCACCGCCTCCGTGTGCGCCAAACACA
CCTTCAGTTCCTCCCTCCACCCCTCGTACGTCACTCTCAAACCACCCCCC
ATCTGCCTCAAGGCCTGCTTACGTTGCGCCGCCGTATCGGCAGAAATCAA
ATCCGCTAGTCCCTCTACCTCTGTCAGGTCCATCCTTCCATTCCCGAAAG
CCCGTTCCGTAAACTCTCCTCTCTCGGCCGGCCGTACCTCTGCTCCCTTC
CCTACATCCAGAGCGAGCAAAGCTTGGGTCACACCTTGGATTACAGCCCG
GCTGCCGTGACAGTGAAGTTCGACAGTGTCTTCTCCCGTGAAGGAACGAG
GGCCCGGAAACCACAGGACGAGGGCTTGGTCCAACACCTCGTGAGTGCTA
GGACAATAAAGCTTCCGCAAACCAGCCACACGAGGCATGGGGAAAGATGC
GGGATTCTTGACGGCAGGAGAATAAGTGAGGGCTGCCAAGCATTGCTCGG
CGCGGGGACCGGAAATGCGAATTACTGCCACGCCCGCGCGACCTTGACCC
GAGGAGAGGGCAAATATGGTGTCGTCCACGTGTGGGGCGACCGCGTCAGT
CCAGCTGACTTGATTCCTCGTTCGCTTTCTTGAATTGATGCTAGAGGCGG
AGGAAAGAGACGACGAGAGTGGCGCGGGAATTGAAGGCCTGGAAAGTCGG
CTGCTCAGTGAGAAGGGAGAGAAGGGGGAGAAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGATCACGGTCCTGGCGCTCGACA
CAGTTCTTCTTATTCGCACCTTTGTGGCTGGGAGGACCAAGGGCGAGTAA
AAAGCAGCGACAGCAACCAGATGCCGGCTACACGGTGCTATTGCGGGCAT
CATGGTGGTCGTCGCAAGTGCTACGTCAAGTTGTAGTAGAATGATGGTCG
GAAGGAGGCCAAGCTGAAGGAGAAGGGAGTAGGGAGGCCGTTTGCCGCGG
CGCATACCCTTGCGCGGAGAGCAAAGTAGAGACGCTGATGATCCTCGTCT
TCCCTCTCTGGCTTGTCGCTGCTTGCGTCCTTTGTGGTGTGAGCATGTGA
GGGAGGGCGTGAAGGAGTGGGGAGAGGCGATAAAGAGGATGACGATCACC
ATCGCATCCCGATGAGACTCTCACGGAGTCTGGCAAAATGATGATGAAAC
CCAGGGGGAAAGAGGACTGCCTAAAGAAAACAAACTTTTCCCCACAATCC
ACTGTGACAAGGCTTCCCCTCGCGTTGTTATGCGCTGCCAGTTGCCATGC
ACGTCGCGGTCCGGGTGGTGCTGCATCTGGTTGTACTCGCTCTGTTTAAT
TTAATTGCTTCGCCCCCGGAAGCCGAGGAAGCCTCGACGCTTCTTCATGC
CCTGTTATCAACTCACCACGACTCACCCTCCTCGCACCGGCACCCACTCT
TCCTTCCATCAACCTACAGCCTAGTTACACCCCCTCGCCTGCCAGCCCCC
TGTTTCATCAGTCAAAGACACCATGGCCACCGCCGTCGTGAGCAGCCGGC
CCACAGGTCCCACGTCGACGGGCGAGGACAAGGGCATTCGATCGTACTAC
CTGAGTAAGATTGACGAGCTCGAGCTGATTGTGCGCGAGCGGACACAGAA
TCTGCAGCGGCTCAAGGCCCAGAGAAACGAGTGGAACGCCAAGGTACGGC
TTCTGCGGGAGGAGCTGCACCACTTGCAGGAGCCCGGTTCGTATGTGGGG
GAGGTAGTCAAGGCCATGGGCAAGACCAAGGTCCTTGTCAAGGTCAATCC
CGAGGGCAAGTATGTGGTAGATCTGGACAAGGACGTAGATATTAACATGT
GCACGCCCAATACCCGGGTGGCGCTGCGTAATGACTCGTACACCCTGCAC
AAGATTTTGCCGACCAAGGTGGACCCGTTGGTGTCGCTGATGAAGGTGGA
AGCCGTGCCTGACTCAACGTATGACATGATTGGGGGTCTAGATAAGCAGG
TGCGGGAGATCAAGGAGGTGATTGAGCTACCTATCAAGCATCCGGAGCTT
TTCGAGGCTTTGGGGGTGGCGCAGCCCAAGGGCGTGTTATTGTACGGGTA
AGTTGATCTTCATTCGCGGAAGGAAGAGGAGGGAAGAGTAGGTTGGTTTT
CCGTGTCGTTTTATAGAAATATCTACAAGAGCGGGAGTATGAATCTCTCC
TCCATCCCTGGACCCTACACAAAACAGGCCCCCGGGTACCGGCAAAACAC
TTCTGGCCCGCGCGGTGGCCCACCACACGGACTGCACCTTCATTCGTGTG
TCTGGGGCGGAGCTGGTGCAGAAATATATTGGGGAGGGGTCTCGGATGGT
GCGTGAGTTGTTTGTGATGGCCCGTGAGGCTGCTCCATCCATTATTTTCA
TGGATGAGATCGACTCGATCGGGTCGTCGCGCGTGGACGGGAGCGAGGGT
GGGGACTCGGAGGTGCAGCGGACGATGTTGGAGTTGCTGAATCAGTTGGA
TGGATTCGAGCCAGCTCAGAACATAAAGGTAGTGATGGCCACGAATCGCA
TTGACATCTTGGACGCGGCCTTGCTCCGCCCTGGCCGTATTGATCGAAAG
ATCGAGTTTCCGCACCCGACCATGGCGTCAAGGTTAGATATTTTAAGCAT
CCATAGTCGGAAGATGAATTTGATGCGTGGGATAAACTTAAAGGGAATCG
CAGAGAAGATGCCGAATGCCTCCGGGGCGGAGTGCAAGGCGGTCTGTACG
GAGGCGGGTATGTTCGCCTTGCGTGAGCGGAGGATACATGTTACGCAGGA
AGACTTCGAGATGGCGGTAGCAAAGGTGATGAAGAAGGACAGTGACTCCA
ATATGTCCATGCGCAAGCTTTGGAAGTAA

Coding sequence (CDS) from alignment at scaffold_9:285967..289995+

>mRNA_4644 ID=mRNA_4644|Name=jgi.p|Nanoce1779_2|623108|organism=Nannochloropsis oceanica|type=CDS|length=3591bp|location=Sequence derived from alignment at scaffold_9:285967..289995+ (Nannochloropsis oceanica)
ATGACGAGGTACAGCGGGAAGAGGGACAAGGGCATTCGATCGTACTACCT
GAGTAAGATTGACGAGCTCGAGCTGATTGTGCGCGAGCGGACACAGAATC
TGCAGCGGCTCAAGGCCCAGAGAAACGAGTGGAACGCCAAGGTACGGCTT
CTGCGGGAGGAGCTGCACCACTTGCAGGAGCCCGGTTCGTATGTGGGGGA
GGTAGTCAAGGCCATGGGCAAGACCAAGGTCCTTGTCAAGGTCAATCCCG
AGGGCAAGTATGTGGTAGATCTGGACAAGGACGTAGATATTAACATGTGC
ACGCCCAATACCCGGGTGGCGCTGCGTAATGACTCGTACACCCTGCACAA
GATTTTGCCGACCAAGGTGGACCCGTTGGTGTCGCTGATGAAGGTGGAAG
CCGTGCCTGACTCAACGTATGACATGATTGGGGGTCTAGATAAGCAGGTG
CGGGAGATCAAGGAGGTGATTGAGCTACCTATCAAGCATCCGGAGCTTTT
CGAGGCTTTGGGGGTGGCGCAGCCCAAGGGCGTGTTATTGTACGGGCCCC
CGGGTACCGGCAAAACACTTCTGGCCCGCGCGGTGGCCCACCACACGGAC
TGCACCTTCATTCGTGTGTCTGGGGCGGAGCTGGTGCAGAAATATATTGG
GGAGGGGTCTCGGATGGTGCGTGAGTTGTTTGTGATGGCCCGTGAGGCTG
CTCCATCCATTATTTTCATGGATGAGATCGACTCGATCGGGTCGTCGCGC
GTGGACGGGAGCGAGGGTGGGGACTCGGAGGTGCAGCGGACGATGTTGGA
GTTGCTGAATCAGTTGGATGGATTCGAGCCAGCTCAGAACATAAAGGTAG
TGATGGCCACGAATCGCATTGACATCTTGGACGCGGCCTTGCTCCGCCCT
GGCCGTATTGATCGAAAGATCGAGTTTCCGCACCCGACCATGGCGTCAAG
GTTAGATATTTTAAGCATCCATAGTCGGAAGATGAATTTGATGCGTGGGA
TAAACTTAAAGGGAATCGCAGAGAAGATGCCGAATGCCTCCGGGGCGGAG
TGCAAGGCGGTCTGTACGGAGGCGGGTATGTTCGCCTTGCGTGAGCGGAG
GATACATGTTACGCAGGAAGACTTCGAGATGGCGGTAGCAAAGGTGATGA
AGAAGGACAGTGACTCCAATATGTCCATGCGCAAGCTTTGGAAGTAAATG
ACGAGGTACAGCGGGAAGAGGGACAAGGGCATTCGATCGTACTACCTGAG
TAAGATTGACGAGCTCGAGCTGATTGTGCGCGAGCGGACACAGAATCTGC
AGCGGCTCAAGGCCCAGAGAAACGAGTGGAACGCCAAGGTACGGCTTCTG
CGGGAGGAGCTGCACCACTTGCAGGAGCCCGGTTCGTATGTGGGGGAGGT
AGTCAAGGCCATGGGCAAGACCAAGGTCCTTGTCAAGGTCAATCCCGAGG
GCAAGTATGTGGTAGATCTGGACAAGGACGTAGATATTAACATGTGCACG
CCCAATACCCGGGTGGCGCTGCGTAATGACTCGTACACCCTGCACAAGAT
TTTGCCGACCAAGGTGGACCCGTTGGTGTCGCTGATGAAGGTGGAAGCCG
TGCCTGACTCAACGTATGACATGATTGGGGGTCTAGATAAGCAGGTGCGG
GAGATCAAGGAGGTGATTGAGCTACCTATCAAGCATCCGGAGCTTTTCGA
GGCTTTGGGGGTGGCGCAGCCCAAGGGCGTGTTATTGTACGGGCCCCCGG
GTACCGGCAAAACACTTCTGGCCCGCGCGGTGGCCCACCACACGGACTGC
ACCTTCATTCGTGTGTCTGGGGCGGAGCTGGTGCAGAAATATATTGGGGA
GGGGTCTCGGATGGTGCGTGAGTTGTTTGTGATGGCCCGTGAGGCTGCTC
CATCCATTATTTTCATGGATGAGATCGACTCGATCGGGTCGTCGCGCGTG
GACGGGAGCGAGGGTGGGGACTCGGAGGTGCAGCGGACGATGTTGGAGTT
GCTGAATCAGTTGGATGGATTCGAGCCAGCTCAGAACATAAAGGTAGTGA
TGGCCACGAATCGCATTGACATCTTGGACGCGGCCTTGCTCCGCCCTGGC
CGTATTGATCGAAAGATCGAGTTTCCGCACCCGACCATGGCGTCAAGGTT
AGATATTTTAAGCATCCATAGTCGGAAGATGAATTTGATGCGTGGGATAA
ACTTAAAGGGAATCGCAGAGAAGATGCCGAATGCCTCCGGGGCGGAGTGC
AAGGCGGTCTGTACGGAGGCGGGTATGTTCGCCTTGCGTGAGCGGAGGAT
ACATGTTACGCAGGAAGACTTCGAGATGGCGGTAGCAAAGGTGATGAAGA
AGGACAGTGACTCCAATATGTCCATGCGCAAGCTTTGGAAGTAAATGACG
AGGTACAGCGGGAAGAGGGACAAGGGCATTCGATCGTACTACCTGAGTAA
GATTGACGAGCTCGAGCTGATTGTGCGCGAGCGGACACAGAATCTGCAGC
GGCTCAAGGCCCAGAGAAACGAGTGGAACGCCAAGGTACGGCTTCTGCGG
GAGGAGCTGCACCACTTGCAGGAGCCCGGTTCGTATGTGGGGGAGGTAGT
CAAGGCCATGGGCAAGACCAAGGTCCTTGTCAAGGTCAATCCCGAGGGCA
AGTATGTGGTAGATCTGGACAAGGACGTAGATATTAACATGTGCACGCCC
AATACCCGGGTGGCGCTGCGTAATGACTCGTACACCCTGCACAAGATTTT
GCCGACCAAGGTGGACCCGTTGGTGTCGCTGATGAAGGTGGAAGCCGTGC
CTGACTCAACGTATGACATGATTGGGGGTCTAGATAAGCAGGTGCGGGAG
ATCAAGGAGGTGATTGAGCTACCTATCAAGCATCCGGAGCTTTTCGAGGC
TTTGGGGGTGGCGCAGCCCAAGGGCGTGTTATTGTACGGGCCCCCGGGTA
CCGGCAAAACACTTCTGGCCCGCGCGGTGGCCCACCACACGGACTGCACC
TTCATTCGTGTGTCTGGGGCGGAGCTGGTGCAGAAATATATTGGGGAGGG
GTCTCGGATGGTGCGTGAGTTGTTTGTGATGGCCCGTGAGGCTGCTCCAT
CCATTATTTTCATGGATGAGATCGACTCGATCGGGTCGTCGCGCGTGGAC
GGGAGCGAGGGTGGGGACTCGGAGGTGCAGCGGACGATGTTGGAGTTGCT
GAATCAGTTGGATGGATTCGAGCCAGCTCAGAACATAAAGGTAGTGATGG
CCACGAATCGCATTGACATCTTGGACGCGGCCTTGCTCCGCCCTGGCCGT
ATTGATCGAAAGATCGAGTTTCCGCACCCGACCATGGCGTCAAGGTTAGA
TATTTTAAGCATCCATAGTCGGAAGATGAATTTGATGCGTGGGATAAACT
TAAAGGGAATCGCAGAGAAGATGCCGAATGCCTCCGGGGCGGAGTGCAAG
GCGGTCTGTACGGAGGCGGGTATGTTCGCCTTGCGTGAGCGGAGGATACA
TGTTACGCAGGAAGACTTCGAGATGGCGGTAGCAAAGGTGATGAAGAAGG
ACAGTGACTCCAATATGTCCATGCGCAAGCTTTGGAAGTAA

Synonyms

Publications