jgi.p|Nanoce1779_2|527516, mRNA_4643 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|527516
Unique NamemRNA_4643
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length696
Alignment locationscaffold_9:283823..284518 -

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Properties
Property NameValue
TranscriptId527602
TrackFilteredModels2
ProteinId527516
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:283823..284518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527516gene_4643Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4643CDS_4643Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527516mRNA_4643-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4643 ID=mRNA_4643|Name=jgi.p|Nanoce1779_2|527516|organism=Nannochloropsis oceanica|type=mRNA|length=696bp
ATGAGCTGGCAAGAAGGTCTGAACCTGCTCGAAACGCTCGAGACTCCCAC
GGTCGAGATCTACAACAAGGTACTGAAGGCATGCGCGAGGGAGGGACAGT
GGGAACCGGGTTGCTGGCTCTTAGAAGAGATGGTCGAGCTGGGCTTAGAG
CCAGATCGGCAGAGTTTTGTGTTAGCTATTGAGGCGTGTGGGGAGCAAGG
CCGGTACGAGGAGGCCAACCACGTGTTGAGCTACATGAAAGACGCGGAGC
ACAAGCTAGACAACGAGGTATACGGGTTCGTTGCCCGCGCCTGTGAGGCG
GCCAAGAATTGGCGGCAGCTCCAATGGACGCTTGACGAAATGACATACAG
GGAATTGGTTCCTGATCTGGTGACCTACAATCGCGCGATAGGCGGCTGCG
GCGAGGAAGGGGAGTGGGAGATGGCCTTGACACTGGTGCTGGAGGCTGAC
CGGCGGGGGGTGACTTGCGACTATGCTAGTTACGATCTCGCCATGCAGGC
GCTGCACAAGGCCAAACAAGCGACTCGGGCCCACGAATTGTTGAAAACCA
TGAAGGAGGCAGGCGTGGCGCCAGGCAAGGACATGCTGGCATTGGTAATG
AAGCTTTGTCAGGAGGCGGGGGAGATGGTACGGGTCGAAGAAATCGGGCG
GGAACTGGATCGGGGGGGATTGGGGGGCGGCAGGAGGGTTGAGTGA
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protein sequence of jgi.p|Nanoce1779_2|527516

>mRNA_4643-protein ID=mRNA_4643-protein|Name=jgi.p|Nanoce1779_2|527516|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MSWQEGLNLLETLETPTVEIYNKVLKACAREGQWEPGCWLLEEMVELGLE
PDRQSFVLAIEACGEQGRYEEANHVLSYMKDAEHKLDNEVYGFVARACEA
AKNWRQLQWTLDEMTYRELVPDLVTYNRAIGGCGEEGEWEMALTLVLEAD
RRGVTCDYASYDLAMQALHKAKQATRAHELLKTMKEAGVAPGKDMLALVM
KLCQEAGEMVRVEEIGRELDRGGLGGGRRVE*
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mRNA from alignment at scaffold_9:283823..284518-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4643 ID=mRNA_4643|Name=jgi.p|Nanoce1779_2|527516|organism=Nannochloropsis oceanica|type=mRNA|length=696bp|location=Sequence derived from alignment at scaffold_9:283823..284518- (Nannochloropsis oceanica)
ATGAGCTGGCAAGAAGGTCTGAACCTGCTCGAAACGCTCGAGACTCCCAC
GGTCGAGATCTACAACAAGGTACTGAAGGCATGCGCGAGGGAGGGACAGT
GGGAACCGGGTTGCTGGCTCTTAGAAGAGATGGTCGAGCTGGGCTTAGAG
CCAGATCGGCAGAGTTTTGTGTTAGCTATTGAGGCGTGTGGGGAGCAAGG
CCGGTACGAGGAGGCCAACCACGTGTTGAGCTACATGAAAGACGCGGAGC
ACAAGCTAGACAACGAGGTATACGGGTTCGTTGCCCGCGCCTGTGAGGCG
GCCAAGAATTGGCGGCAGCTCCAATGGACGCTTGACGAAATGACATACAG
GGAATTGGTTCCTGATCTGGTGACCTACAATCGCGCGATAGGCGGCTGCG
GCGAGGAAGGGGAGTGGGAGATGGCCTTGACACTGGTGCTGGAGGCTGAC
CGGCGGGGGGTGACTTGCGACTATGCTAGTTACGATCTCGCCATGCAGGC
GCTGCACAAGGCCAAACAAGCGACTCGGGCCCACGAATTGTTGAAAACCA
TGAAGGAGGCAGGCGTGGCGCCAGGCAAGGACATGCTGGCATTGGTAATG
AAGCTTTGTCAGGAGGCGGGGGAGATGGTACGGGTCGAAGAAATCGGGCG
GGAACTGGATCGGGGGGGATTGGGGGGCGGCAGGAGGGTTGAGTGA
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Coding sequence (CDS) from alignment at scaffold_9:283823..284518-

>mRNA_4643 ID=mRNA_4643|Name=jgi.p|Nanoce1779_2|527516|organism=Nannochloropsis oceanica|type=CDS|length=696bp|location=Sequence derived from alignment at scaffold_9:283823..284518- (Nannochloropsis oceanica)
ATGAGCTGGCAAGAAGGTCTGAACCTGCTCGAAACGCTCGAGACTCCCAC
GGTCGAGATCTACAACAAGGTACTGAAGGCATGCGCGAGGGAGGGACAGT
GGGAACCGGGTTGCTGGCTCTTAGAAGAGATGGTCGAGCTGGGCTTAGAG
CCAGATCGGCAGAGTTTTGTGTTAGCTATTGAGGCGTGTGGGGAGCAAGG
CCGGTACGAGGAGGCCAACCACGTGTTGAGCTACATGAAAGACGCGGAGC
ACAAGCTAGACAACGAGGTATACGGGTTCGTTGCCCGCGCCTGTGAGGCG
GCCAAGAATTGGCGGCAGCTCCAATGGACGCTTGACGAAATGACATACAG
GGAATTGGTTCCTGATCTGGTGACCTACAATCGCGCGATAGGCGGCTGCG
GCGAGGAAGGGGAGTGGGAGATGGCCTTGACACTGGTGCTGGAGGCTGAC
CGGCGGGGGGTGACTTGCGACTATGCTAGTTACGATCTCGCCATGCAGGC
GCTGCACAAGGCCAAACAAGCGACTCGGGCCCACGAATTGTTGAAAACCA
TGAAGGAGGCAGGCGTGGCGCCAGGCAAGGACATGCTGGCATTGGTAATG
AAGCTTTGTCAGGAGGCGGGGGAGATGGTACGGGTCGAAGAAATCGGGCG
GGAACTGGATCGGGGGGGATTGGGGGGCGGCAGGAGGGTTGAGTGA
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Synonyms
Publications