jgi.p|Nanoce1779_2|527543, mRNA_4641 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|527543
Unique NamemRNA_4641
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1035
Alignment locationscaffold_9:279859..280893 +

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Properties
Property NameValue
TranscriptId527629
TrackFilteredModels2
ProteinId527543
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:279859..280893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527543gene_4641Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527543mRNA_4641-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4641CDS_4641Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4641 ID=mRNA_4641|Name=jgi.p|Nanoce1779_2|527543|organism=Nannochloropsis oceanica|type=mRNA|length=1035bp
ATGTCCCGAACACCGTTGGGAGTAGGCGTCGTTGGCTGCGGGCGCATCGG
ACAGATACACGGCAATACCCTCGCTTTCCACACGCCAGGCGCGCGGCTTG
TGGCCATTACGGACCCCTTCGAGGAGATGGGTAAGAAGTTAATAGAACAA
ACGGGTGGCATGCCCACCTACCACAAGGACTACTTGGAGCTGCTTGACCG
CGACGATGTGCATGCCGTGGTGGTGGCTTCACCCACGCCCTACCACGTGG
AGCAAATCATGTCGGCCGTCGAGCGTGGCAAACACGTCTTCTGTGAGAAA
CCGATCTCGAACGATCTCTCTGCTATTGACGCCTGCACTCAAGCTGCGGC
TAAGGCGGGCACCAAGCTCATCCTCGGCTTCCAACGTCGCTTCGACATCA
ACTTTCAAAATGTCAAGAAGCAGATTACGCAAGGCGCAATTGGCAAAATG
CGGACTTTCCGCATCGTAAGTCGGGATCCGGCCCCACCCCCTGCTGAGTA
CCTCAAGACAAGCGGCGGCATCTTTTTGGACATGAGCAGCCACGATTTTG
ATATGGCTCGTTTCTTGGTGGGGAGCGAGATTGAGGAGGTCTACGTGCAA
GGAGCCTCGTGGGGGCCCGAGGCTAAGGCGGCAGGGGACCTGGACACTCA
AATCACACTCTTACGGTTCCAAAATGGGGTGTTTGGAACAATTGAAAACT
CTCGTTTGTGTTCTTTCGGGTATGACCAGCGTGTGGAGGTCTTTGGGGAG
CTGGGGTCGCTGCAGGGGGAGAATCGGAGCCCGAGCACAGTGCTGCGTTC
GGATGCCAAGGGCGTGACTGCTGGTCTGCCGTACTCGTTTTTTATGGACC
GGTACAGCGAGGCCTATGTGGGGATTATCAAGGCGTTTGTGAACAAAGTA
ACAGGCGGAGAAGGGGAGGGAGTCGAGCATTTGGCGGGTGCGATGGACGG
GAAGGCCACGGTTCTGGCGGGCATGGCGGCGAAGGCGTCGGTGGAGACAG
GAAGGCCGGTCCATATCACGGAGGTGGGAAAGTAG
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protein sequence of jgi.p|Nanoce1779_2|527543

>mRNA_4641-protein ID=mRNA_4641-protein|Name=jgi.p|Nanoce1779_2|527543|organism=Nannochloropsis oceanica|type=polypeptide|length=345bp
MSRTPLGVGVVGCGRIGQIHGNTLAFHTPGARLVAITDPFEEMGKKLIEQ
TGGMPTYHKDYLELLDRDDVHAVVVASPTPYHVEQIMSAVERGKHVFCEK
PISNDLSAIDACTQAAAKAGTKLILGFQRRFDINFQNVKKQITQGAIGKM
RTFRIVSRDPAPPPAEYLKTSGGIFLDMSSHDFDMARFLVGSEIEEVYVQ
GASWGPEAKAAGDLDTQITLLRFQNGVFGTIENSRLCSFGYDQRVEVFGE
LGSLQGENRSPSTVLRSDAKGVTAGLPYSFFMDRYSEAYVGIIKAFVNKV
TGGEGEGVEHLAGAMDGKATVLAGMAAKASVETGRPVHITEVGK*
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mRNA from alignment at scaffold_9:279859..280893+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4641 ID=mRNA_4641|Name=jgi.p|Nanoce1779_2|527543|organism=Nannochloropsis oceanica|type=mRNA|length=1035bp|location=Sequence derived from alignment at scaffold_9:279859..280893+ (Nannochloropsis oceanica)
ATGTCCCGAACACCGTTGGGAGTAGGCGTCGTTGGCTGCGGGCGCATCGG
ACAGATACACGGCAATACCCTCGCTTTCCACACGCCAGGCGCGCGGCTTG
TGGCCATTACGGACCCCTTCGAGGAGATGGGTAAGAAGTTAATAGAACAA
ACGGGTGGCATGCCCACCTACCACAAGGACTACTTGGAGCTGCTTGACCG
CGACGATGTGCATGCCGTGGTGGTGGCTTCACCCACGCCCTACCACGTGG
AGCAAATCATGTCGGCCGTCGAGCGTGGCAAACACGTCTTCTGTGAGAAA
CCGATCTCGAACGATCTCTCTGCTATTGACGCCTGCACTCAAGCTGCGGC
TAAGGCGGGCACCAAGCTCATCCTCGGCTTCCAACGTCGCTTCGACATCA
ACTTTCAAAATGTCAAGAAGCAGATTACGCAAGGCGCAATTGGCAAAATG
CGGACTTTCCGCATCGTAAGTCGGGATCCGGCCCCACCCCCTGCTGAGTA
CCTCAAGACAAGCGGCGGCATCTTTTTGGACATGAGCAGCCACGATTTTG
ATATGGCTCGTTTCTTGGTGGGGAGCGAGATTGAGGAGGTCTACGTGCAA
GGAGCCTCGTGGGGGCCCGAGGCTAAGGCGGCAGGGGACCTGGACACTCA
AATCACACTCTTACGGTTCCAAAATGGGGTGTTTGGAACAATTGAAAACT
CTCGTTTGTGTTCTTTCGGGTATGACCAGCGTGTGGAGGTCTTTGGGGAG
CTGGGGTCGCTGCAGGGGGAGAATCGGAGCCCGAGCACAGTGCTGCGTTC
GGATGCCAAGGGCGTGACTGCTGGTCTGCCGTACTCGTTTTTTATGGACC
GGTACAGCGAGGCCTATGTGGGGATTATCAAGGCGTTTGTGAACAAAGTA
ACAGGCGGAGAAGGGGAGGGAGTCGAGCATTTGGCGGGTGCGATGGACGG
GAAGGCCACGGTTCTGGCGGGCATGGCGGCGAAGGCGTCGGTGGAGACAG
GAAGGCCGGTCCATATCACGGAGGTGGGAAAGTAG
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Coding sequence (CDS) from alignment at scaffold_9:279859..280893+

>mRNA_4641 ID=mRNA_4641|Name=jgi.p|Nanoce1779_2|527543|organism=Nannochloropsis oceanica|type=CDS|length=1035bp|location=Sequence derived from alignment at scaffold_9:279859..280893+ (Nannochloropsis oceanica)
ATGTCCCGAACACCGTTGGGAGTAGGCGTCGTTGGCTGCGGGCGCATCGG
ACAGATACACGGCAATACCCTCGCTTTCCACACGCCAGGCGCGCGGCTTG
TGGCCATTACGGACCCCTTCGAGGAGATGGGTAAGAAGTTAATAGAACAA
ACGGGTGGCATGCCCACCTACCACAAGGACTACTTGGAGCTGCTTGACCG
CGACGATGTGCATGCCGTGGTGGTGGCTTCACCCACGCCCTACCACGTGG
AGCAAATCATGTCGGCCGTCGAGCGTGGCAAACACGTCTTCTGTGAGAAA
CCGATCTCGAACGATCTCTCTGCTATTGACGCCTGCACTCAAGCTGCGGC
TAAGGCGGGCACCAAGCTCATCCTCGGCTTCCAACGTCGCTTCGACATCA
ACTTTCAAAATGTCAAGAAGCAGATTACGCAAGGCGCAATTGGCAAAATG
CGGACTTTCCGCATCGTAAGTCGGGATCCGGCCCCACCCCCTGCTGAGTA
CCTCAAGACAAGCGGCGGCATCTTTTTGGACATGAGCAGCCACGATTTTG
ATATGGCTCGTTTCTTGGTGGGGAGCGAGATTGAGGAGGTCTACGTGCAA
GGAGCCTCGTGGGGGCCCGAGGCTAAGGCGGCAGGGGACCTGGACACTCA
AATCACACTCTTACGGTTCCAAAATGGGGTGTTTGGAACAATTGAAAACT
CTCGTTTGTGTTCTTTCGGGTATGACCAGCGTGTGGAGGTCTTTGGGGAG
CTGGGGTCGCTGCAGGGGGAGAATCGGAGCCCGAGCACAGTGCTGCGTTC
GGATGCCAAGGGCGTGACTGCTGGTCTGCCGTACTCGTTTTTTATGGACC
GGTACAGCGAGGCCTATGTGGGGATTATCAAGGCGTTTGTGAACAAAGTA
ACAGGCGGAGAAGGGGAGGGAGTCGAGCATTTGGCGGGTGCGATGGACGG
GAAGGCCACGGTTCTGGCGGGCATGGCGGCGAAGGCGTCGGTGGAGACAG
GAAGGCCGGTCCATATCACGGAGGTGGGAAAGTAG
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Synonyms
Publications