jgi.p|Nanoce1779_2|587304, mRNA_4639 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|587304
Unique Name	mRNA_4639
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1615
Alignment location	scaffold_9:270537..272230 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	587390
Track	FilteredModels2
ProteinId	587304

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:270537..272230 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587304	gene_4639	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587304	mRNA_4639-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4639	CDS_4639	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:270537..272230+
coding sequence from alignment at scaffold_9:270537..272230+

mRNA sequence

>mRNA_4639 ID=mRNA_4639|Name=jgi.p|Nanoce1779_2|587304|organism=Nannochloropsis oceanica|type=mRNA|length=1615bp
TCGGCCCGACCCGACAAATAAGGCGAACACGAACGTCATCGTCATCCACC
TCGTTCCGCTCTCACTGCGGCTCCGTGCTTGCCATCTTCATGCTCTTTCT
CGCCTTTGCCCGCAAGACTACGACTGCCTGGCGAATCCCCTTATCCTACT
CATCTTCCCTGTCCAGCACTATCCGTTGGGCAACCGCCTTGTCCGACAAA
TCTCTTACACCCTCAAGACGCACTATTACAATCCTAAGCAGCATTCCCGC
CCCCGAGACGGATATCTCCGCCCAAGGCCAAGTATTACCGACAAGTTTCA
AATCCACGTTCCTCCAAACACTGAGTACGCGAGGCTACATCCATCAGTGC
ACGGATTTCAAAGCCTTGGACGAGGCGTGTGCGGCAGGGGAACCTATCGC
GGCTTACCTAGGATTTGATGCCACTGCCCCCAGCCTTCACGTGGGCAGCT
TGCTTCAAATCATGATCCTACGACATCTGCAGAAATCGGGGCATAAACCC
TTGGTTCTCATGGGAGGGGGAACGACCAAGGTGGGGGACCCATCCGGGAA
GGACGAGGCGAGGAAGCTGATGACCTATGAGGTGATTCAGAGAAATATCG
ACTCCATCTCTGCGGTCTTTCGCCAATTTTTGAAGTTTGGGGAGGGGCCG
ACGGAGGCACTGTTGGTGAACAACGACGATTGGCTGTCATCGATTCGGTA
TCTTGACTTTTTGAGGGACTACGGACAGCACTTCACGATCAATCGGATGT
TGAATTTTGATAGTGTAAAGGTGAGGTTGGAGAGGGAGAGTCCTCTGTCT
TTCCTCGAGTTCAATTACATGATCTTGCAGGCGTACGACTTTTTGGAATT
GTCAAGACGATTCAATGCTAGATTGCAGTTAGGCGGGTCAGACCAGTGGG
GAAACATCATTAATGGGGTGGAGCTGGCGAGGAAGGTGGATGGGAAGCAT
TTGTTTGGGCTGACGGCCCCCTTGATGACCACGTCGGATGGGAAGAAGAT
GGGGAAGACCGCGAGCGGAGCAGTCTGGCTGAAGAAAGAGTTGTTGAGTG
AGTATGAGTATTGGCAGTTTTGGCGGAACACGAACGACGCGGACGTGACG
CGTTTTCTGAAATTGTTTACCGAGATGCCTTTAGACAAGATTGAGGAGCT
TGCACGATTGGAGGGAGCCAGGATCAATGAAGCAAAGGTGATTCTGGCGG
ACGAGGCGACCAAATTGCTGCATGGAGAGGAATGTTTGTCTGAGATTCAT
GCAACAGTCGCCAATTTATTCTCAGGCGGTGGCTCGGATAGCACGGAGGC
CTTGCCGCGGGTGGTGGTGGGAAAGGCCGAGCTGGGCGACGCAGGCATGC
AAGTGGCGGAATTATTTGTGCGTCTTGAGATGTCCAAGTCCAAAGCGGAG
GCCCGAAGGCTTATTAAGGGAGGAGGGGCACGGTTGAATGGGGAGGCGAT
CAAGGATGAGACCTTTGTAGTGACAGCAGCCAGCTTTATCAAGCCGGAAA
TTATGCTGAGCGCGGGCAAGAAAAAGCATGGGATTGTGGAGCTCAGTAAT
TGATGAATGGAAAAGACATTGAGAGTTGGTTGATAAGGTAAAAATAAAGC
TACACTTATGCGACT

protein sequence of jgi.p|Nanoce1779_2|587304

>mRNA_4639-protein ID=mRNA_4639-protein|Name=jgi.p|Nanoce1779_2|587304|organism=Nannochloropsis oceanica|type=polypeptide|length=488bp
MLFLAFARKTTTAWRIPLSYSSSLSSTIRWATALSDKSLTPSRRTITILS
SIPAPETDISAQGQVLPTSFKSTFLQTLSTRGYIHQCTDFKALDEACAAG
EPIAAYLGFDATAPSLHVGSLLQIMILRHLQKSGHKPLVLMGGGTTKVGD
PSGKDEARKLMTYEVIQRNIDSISAVFRQFLKFGEGPTEALLVNNDDWLS
SIRYLDFLRDYGQHFTINRMLNFDSVKVRLERESPLSFLEFNYMILQAYD
FLELSRRFNARLQLGGSDQWGNIINGVELARKVDGKHLFGLTAPLMTTSD
GKKMGKTASGAVWLKKELLSEYEYWQFWRNTNDADVTRFLKLFTEMPLDK
IEELARLEGARINEAKVILADEATKLLHGEECLSEIHATVANLFSGGGSD
STEALPRVVVGKAELGDAGMQVAELFVRLEMSKSKAEARRLIKGGGARLN
GEAIKDETFVVTAASFIKPEIMLSAGKKKHGIVELSN*

mRNA from alignment at scaffold_9:270537..272230+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4639 ID=mRNA_4639|Name=jgi.p|Nanoce1779_2|587304|organism=Nannochloropsis oceanica|type=mRNA|length=1694bp|location=Sequence derived from alignment at scaffold_9:270537..272230+ (Nannochloropsis oceanica)
TCGGCCCGACCCGACAAATAAGGGTAAATGAAGAAGGAGAGAAGGTCCTT
GGTAGGGCACACGCAGCAGACCGAGTTGTCTTTTCTTTCCTTACTACCAC
AGCGAACACGAACGTCATCGTCATCCACCTCGTTCCGCTCTCACTGCGGC
TCCGTGCTTGCCATCTTCATGCTCTTTCTCGCCTTTGCCCGCAAGACTAC
GACTGCCTGGCGAATCCCCTTATCCTACTCATCTTCCCTGTCCAGCACTA
TCCGTTGGGCAACCGCCTTGTCCGACAAATCTCTTACACCCTCAAGACGC
ACTATTACAATCCTAAGCAGCATTCCCGCCCCCGAGACGGATATCTCCGC
CCAAGGCCAAGTATTACCGACAAGTTTCAAATCCACGTTCCTCCAAACAC
TGAGTACGCGAGGCTACATCCATCAGTGCACGGATTTCAAAGCCTTGGAC
GAGGCGTGTGCGGCAGGGGAACCTATCGCGGCTTACCTAGGATTTGATGC
CACTGCCCCCAGCCTTCACGTGGGCAGCTTGCTTCAAATCATGATCCTAC
GACATCTGCAGAAATCGGGGCATAAACCCTTGGTTCTCATGGGAGGGGGA
ACGACCAAGGTGGGGGACCCATCCGGGAAGGACGAGGCGAGGAAGCTGAT
GACCTATGAGGTGATTCAGAGAAATATCGACTCCATCTCTGCGGTCTTTC
GCCAATTTTTGAAGTTTGGGGAGGGGCCGACGGAGGCACTGTTGGTGAAC
AACGACGATTGGCTGTCATCGATTCGGTATCTTGACTTTTTGAGGGACTA
CGGACAGCACTTCACGATCAATCGGATGTTGAATTTTGATAGTGTAAAGG
TGAGGTTGGAGAGGGAGAGTCCTCTGTCTTTCCTCGAGTTCAATTACATG
ATCTTGCAGGCGTACGACTTTTTGGAATTGTCAAGACGATTCAATGCTAG
ATTGCAGTTAGGCGGGTCAGACCAGTGGGGAAACATCATTAATGGGGTGG
AGCTGGCGAGGAAGGTGGATGGGAAGCATTTGTTTGGGCTGACGGCCCCC
TTGATGACCACGTCGGATGGGAAGAAGATGGGGAAGACCGCGAGCGGAGC
AGTCTGGCTGAAGAAAGAGTTGTTGAGTGAGTATGAGTATTGGCAGTTTT
GGCGGAACACGAACGACGCGGACGTGACGCGTTTTCTGAAATTGTTTACC
GAGATGCCTTTAGACAAGATTGAGGAGCTTGCACGATTGGAGGGAGCCAG
GATCAATGAAGCAAAGGTGATTCTGGCGGACGAGGCGACCAAATTGCTGC
ATGGAGAGGAATGTTTGTCTGAGATTCATGCAACAGTCGCCAATTTATTC
TCAGGCGGTGGCTCGGATAGCACGGAGGCCTTGCCGCGGGTGGTGGTGGG
AAAGGCCGAGCTGGGCGACGCAGGCATGCAAGTGGCGGAATTATTTGTGC
GTCTTGAGATGTCCAAGTCCAAAGCGGAGGCCCGAAGGCTTATTAAGGGA
GGAGGGGCACGGTTGAATGGGGAGGCGATCAAGGATGAGACCTTTGTAGT
GACAGCAGCCAGCTTTATCAAGCCGGAAATTATGCTGAGCGCGGGCAAGA
AAAAGCATGGGATTGTGGAGCTCAGTAATTGATGAATGGAAAAGACATTG
AGAGTTGGTTGATAAGGTAAAAATAAAGCTACACTTATGCGACT

Coding sequence (CDS) from alignment at scaffold_9:270537..272230+

>mRNA_4639 ID=mRNA_4639|Name=jgi.p|Nanoce1779_2|587304|organism=Nannochloropsis oceanica|type=CDS|length=1464bp|location=Sequence derived from alignment at scaffold_9:270537..272230+ (Nannochloropsis oceanica)
ATGCTCTTTCTCGCCTTTGCCCGCAAGACTACGACTGCCTGGCGAATCCC
CTTATCCTACTCATCTTCCCTGTCCAGCACTATCCGTTGGGCAACCGCCT
TGTCCGACAAATCTCTTACACCCTCAAGACGCACTATTACAATCCTAAGC
AGCATTCCCGCCCCCGAGACGGATATCTCCGCCCAAGGCCAAGTATTACC
GACAAGTTTCAAATCCACGTTCCTCCAAACACTGAGTACGCGAGGCTACA
TCCATCAGTGCACGGATTTCAAAGCCTTGGACGAGGCGTGTGCGGCAGGG
GAACCTATCGCGGCTTACCTAGGATTTGATGCCACTGCCCCCAGCCTTCA
CGTGGGCAGCTTGCTTCAAATCATGATCCTACGACATCTGCAGAAATCGG
GGCATAAACCCTTGGTTCTCATGGGAGGGGGAACGACCAAGGTGGGGGAC
CCATCCGGGAAGGACGAGGCGAGGAAGCTGATGACCTATGAGGTGATTCA
GAGAAATATCGACTCCATCTCTGCGGTCTTTCGCCAATTTTTGAAGTTTG
GGGAGGGGCCGACGGAGGCACTGTTGGTGAACAACGACGATTGGCTGTCA
TCGATTCGGTATCTTGACTTTTTGAGGGACTACGGACAGCACTTCACGAT
CAATCGGATGTTGAATTTTGATAGTGTAAAGGTGAGGTTGGAGAGGGAGA
GTCCTCTGTCTTTCCTCGAGTTCAATTACATGATCTTGCAGGCGTACGAC
TTTTTGGAATTGTCAAGACGATTCAATGCTAGATTGCAGTTAGGCGGGTC
AGACCAGTGGGGAAACATCATTAATGGGGTGGAGCTGGCGAGGAAGGTGG
ATGGGAAGCATTTGTTTGGGCTGACGGCCCCCTTGATGACCACGTCGGAT
GGGAAGAAGATGGGGAAGACCGCGAGCGGAGCAGTCTGGCTGAAGAAAGA
GTTGTTGAGTGAGTATGAGTATTGGCAGTTTTGGCGGAACACGAACGACG
CGGACGTGACGCGTTTTCTGAAATTGTTTACCGAGATGCCTTTAGACAAG
ATTGAGGAGCTTGCACGATTGGAGGGAGCCAGGATCAATGAAGCAAAGGT
GATTCTGGCGGACGAGGCGACCAAATTGCTGCATGGAGAGGAATGTTTGT
CTGAGATTCATGCAACAGTCGCCAATTTATTCTCAGGCGGTGGCTCGGAT
AGCACGGAGGCCTTGCCGCGGGTGGTGGTGGGAAAGGCCGAGCTGGGCGA
CGCAGGCATGCAAGTGGCGGAATTATTTGTGCGTCTTGAGATGTCCAAGT
CCAAAGCGGAGGCCCGAAGGCTTATTAAGGGAGGAGGGGCACGGTTGAAT
GGGGAGGCGATCAAGGATGAGACCTTTGTAGTGACAGCAGCCAGCTTTAT
CAAGCCGGAAATTATGCTGAGCGCGGGCAAGAAAAAGCATGGGATTGTGG
AGCTCAGTAATTGA

Synonyms

Publications