jgi.p|Nanoce1779_2|587299, mRNA_4638 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|587299
Unique Name	mRNA_4638
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3022
Alignment location	scaffold_9:266876..270126 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	587385
Track	FilteredModels2
ProteinId	587299

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:266876..270126 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587299	gene_4638	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587299	mRNA_4638-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4638	CDS_4638	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:266876..270126+
coding sequence from alignment at scaffold_9:266876..270126+

mRNA sequence

>mRNA_4638 ID=mRNA_4638|Name=jgi.p|Nanoce1779_2|587299|organism=Nannochloropsis oceanica|type=mRNA|length=3022bp
GCATTATGCACATCTAGTACTTTAGAATTTTGCCAATCAGAAAGGGACGA
GTTTTTTGTAGAGCCAGCGAGTTAAAAATAATAATAAATTATTTCACTAA
ATCGATAAGCTAGCATAAAATCTGGAACCCGCATGGAATTCTATACTCAT
GTAAGAAGAGTCAAGATCCAATCAGATTAATGTCGTGTTTGATCGTATGG
TCTGGATTCACTCGACCGGAGTTAGAAGCTGGCGCGCGAACACTCATCAA
TGCAAGCACTCGCGCCAAAAACTCCGTCTTTCCAGTTCGAGAAAGTGGCG
GCCTGCTACTGTATATTACCTTTGCGCTACGAGAAGGACACGATACAAAC
CTATCTATTCATATGACGCAGGACAAGACCCTCGTGCGTGTTCCTACACA
TGCGGACATGTCGGTGAAGGATGAGGTCTTGCTTAGTCGTCATTTGTCAT
CCAAAAACTGCCATAAAAGTCAGAGTATCTGGCCTCCTCTTGACTACGCC
ACGCTCACCTCTCCCTGCAAACAAAGCCTCACATACAAAACAGCCACCAT
GCGACGACGGAATTTAGGGTTGGTCGGTCTTTTCTGGAGCGGCGCATTAT
CCTCTGCCTTTGTCTTCCCGGTGAAACCATTGGGGGCCAGCCGCCATGTG
ATGGAACAGCAGAAGCATATCACGGTGAGTCTCATCATAACGCGGCAACC
CTAGAAGTCGCACGCTCGATTATTAGGGCGACTTGTGTGCAGCATGGAAA
AAGACGCACGTTCAAGTAAGGGCAGACAGGGGTTCCGCACAATTTGAAGA
TTGTCATTATTTTGGGCCCCTTGCGTCCTCGCCACGTCTTCGCCAGCACA
GACAAGACACGCACAAAGCGGCCTTGTCGTGCTCCCTTCGCAACCCCGTG
ATACTCCACCCACGCACCATTCATCTTGACTCTTGCCTTTCCCGGCCTCT
CTCCGCCCACCTTTTTGTTACAGTAACCCATTCAAATACAGCAACGGTGC
TGTTCCAAATATGTGTCCATCCACTCACACCCCATCCCTTTGTATCTCCA
CCTTTTCTCCTCCCATCGACTCAGCCGTGTAGCCTTTCCACATTCCAGCC
CAGTATCAGCGGCAGTATCTGTGACAGCGGAAGAAGAAGAATTTTCTTTC
CTTTCTCAAGGACAGCAACCGCAACAGAAGCCACCGCCGCTGGGGAGGCC
GACACCGAGGCGGACGCGACAAAAATAGCCGCTGAAGTGGCAGCCATCAA
GCCGATGAAGATTAAGGAGATCAAGGCCGAGCTGGAAGAGAGAGGGGTAG
AGTGGAGAGATTTGCTGGAAAAAAATGAATTTTCGTTGAGGTTGGCCGAG
GCACGCGTCAGAGGCACCACGAAGTCCCCGCCACCTGTGGAGGATGAGAA
GAAGAAGGAGGAGAACGAGAGCGTGGACACAGCGGAACAACCCCGAGCGG
AATCGTCGTCGTCATCGGCATCATCGCCGCCTCCGCCTCCCAAGGAGCAG
CCGGCAGCAGGAGGAGCAGCAGCATCGGCGACGACTAAAATGGATGAGGC
GGCGCGGTACACCAAGGCCCTGGTCGAAGTGATGAAGCTCAAGATCACCG
AAATAAAGAAAGAGCTCGACCTACTTAAGATTCCGCACTCGAGCTTTTTC
GAAAAACGCGAGTTTGCCGAAGCCCTCGCTCGGGCCCGCGTCAACCCCCC
TTCCAGCAGCAGCAGCAGTAGTACCAGTCGGGGGGATAACGTCGACCCGG
ACGAAGATCCAAGTCAGTATCGGTTTGTAGAAGTCAAACGGATGCCCAAG
GAGGGCGGAGAAGGAGGAGGCGGCGGGGGACCACGGGCTGGGGCAGGAGC
GGGAGGGAGGGCCGGAGAGAGACCAGGGCCGGGTTCAGGAAGGGGAGGAG
GGGGAGGTGATCCGTTCTCAGATATTTTCAACGCACGGGGTGGAGGCGGA
GGAGCTTCAGCTGGAACCAGGGCTGGGGGCGCATCGGGCGTGGGGGGGTT
TGCCGACGCTTTCTTTAAGCAGACCGGTGGTGCGAGGGGAGGAGGGGGAG
GGAGCCCGTTTGGTGGGGGAGGGTTTGGGGGCATGCCAGGCATGGGAGGG
ATTGACCCGAGCATGATAGCATCGATCATGTCAAACCCTCGGACACAAGC
CGCATTTCAACGGGCACAGCAAAATCCCAAGGTGATGGCAGCGTTGCAAG
ACGTCATGTCTAATCCGGCCAACATTGCCAAGTATGCGAATGATAAGGAG
GTGACAAGCGTGTTGAATGAACTGCAAAGTTTATTTAGAAAGTAGAGAGC
AAGGGAAGGGAGGTAGGACTGGTAGGTGTAAAGATATCATTTATTTTGTT
GGTCCTGTCCTGTCTAGGTATTTATGCCCAGTCCGTTCTACGTGGTTTGT
CTGGCGACGCCTTACGTGCAATACATGATAGTAGTAGCAGCAGCAGCCGT
AGCAGCGGCGGGAAGTCTCAGTCAAAAAACGTGAAGTGAGGAAAGAAAAA
GGAAGAAATCAACGTCAGACGATTACTGAAGAAGGAGAAAAGAAGAAGGA
GCTCCTTGGCCTTTTCTGCTGTCGCTGCCGTGGCTCCCCCTGGCCGCCCA
ACCGTCTGCCTAATCCGAAGAGGTGTGCGAAGAGAAAAGCTCGGGTGCGC
TCGCGGCCTGAAAGCGTCTCGCTGCTGCTACCCCTTCCACATCCTTGTGC
GTCGCTCACGTTGCCGCTGCCGTCGCACTTTCGTTGACGGTCCTTGAGGG
GCACCCAATGAAATCACTCGGCCTGCTGGTGCTGCGGCTGCCGCTGGTGT
CGCTGCTGGTGCTGCTCCTCCCTCGTTGCTGTCGGTGTCACCGCTGTCGA
TGTCTACCGCGCTGGGATAGCCGGCTTCCTTGCCGTTTAGTGCGTCGGAG
TTGGTGACACTCCCTTGGTCGTCCTGGCTGCTGCCTCGGCCGCCGCACTG
ATCCTCGCTGTCGCTGCTGCTGTCGCTGCTGCTGTCGCTGTCGCAACCGC
AATGAGCGTTGTCGCTGCCCGT

protein sequence of jgi.p|Nanoce1779_2|587299

>mRNA_4638-protein ID=mRNA_4638-protein|Name=jgi.p|Nanoce1779_2|587299|organism=Nannochloropsis oceanica|type=polypeptide|length=347bp
MKIKEIKAELEERGVEWRDLLEKNEFSLRLAEARVRGTTKSPPPVEDEKK
KEENESVDTAEQPRAESSSSSASSPPPPPKEQPAAGGAAASATTKMDEAA
RYTKALVEVMKLKITEIKKELDLLKIPHSSFFEKREFAEALARARVNPPS
SSSSSSTSRGDNVDPDEDPSQYRFVEVKRMPKEGGEGGGGGGPRAGAGAG
GRAGERPGPGSGRGGGGGDPFSDIFNARGGGGGASAGTRAGGASGVGGFA
DAFFKQTGGARGGGGGSPFGGGGFGGMPGMGGIDPSMIASIMSNPRTQAA
FQRAQQNPKVMAALQDVMSNPANIAKYANDKEVTSVLNELQSLFRK*

mRNA from alignment at scaffold_9:266876..270126+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4638 ID=mRNA_4638|Name=jgi.p|Nanoce1779_2|587299|organism=Nannochloropsis oceanica|type=mRNA|length=3251bp|location=Sequence derived from alignment at scaffold_9:266876..270126+ (Nannochloropsis oceanica)
GCATTATGCACATCTAGTACTTTAGAATTTTGCCAATCAGAAAGGGACGA
GTTTTTTGTAGAGCCAGCGAGTTAAAAATAATAATAAATTATTTCACTAA
ATCGATAAGCTAGCATAAAATCTGGAACCCGCATGGAATTCTATACTCAT
GTAAGAAGAGTCAAGATCCAATCAGATTAATGTCGTGTTTGATCGTATGG
TCTGGATTCACTCGACCGGAGTTAGAAGCTGGCGCGCGAACACTCATCAA
TGCAAGCACTCGCGCCAAAAACTCCGTCTTTCCAGTTCGAGAAAGTGGCG
GCCTGCTACTGTATATTACCTTTGCGCTACGAGAAGGACACGATACAAAC
CTATCTATTCATATGACGCAGGACAAGACCCTCGTGCGTGTTCCTACACA
TGCGGACATGTCGGTGAAGGATGAGGTCTTGCTTAGTCGTCATTTGTCAT
CCAAAAACTGCCATAAAAGTCAGAGTATCTGGCCTCCTCTTGACTACGCC
ACGCTCACCTCTCCCTGCAAACAAAGCCTCACATACAAAACAGCCACCAT
GCGACGACGGAATTTAGGGTTGGTCGGTCTTTTCTGGAGCGGCGCATTAT
CCTCTGCCTTTGTCTTCCCGGTGAAACCATTGGGGGCCAGCCGCCATGTG
ATGGAACAGCAGAAGCATATCACGGTGAGTCTCATCATAACGCGGCAACC
CTAGAAGTCGCACGCTCGATTATTAGGGCGACTTGTGTGCAGCATGGAAA
AAGACGCACGTTCAAGTAAGGGCAGACAGGGGTTCCGCACAATTTGAAGA
TTGTCATTATTTTGGGCCCCTTGCGTCCTCGCCACGTCTTCGCCAGCACA
GACAAGACACGCACAAAGCGGCCTTGTCGTGCTCCCTTCGCAACCCCGTG
ATACTCCACCCACGCACCATTCATCTTGACTCTTGCCTTTCCCGGCCTCT
CTCCGCCCACCTTTTTGTTACAGTAACCCATTCAAATACAGCAACGGTGC
TGTTCCAAATATGTGTCCATCCACTCACACCCCATCCCTTTGTATCTCCA
CCTTTTCTCCTCCCATCGACTCAGCCGTGTAGCCTTTCCACATTCCAGCC
CAGTATCAGCGGCAGTATCTGTGACAGCGGAAGAAGAAGAATTTTCTTTC
CTTTCTCAAGGACAGCAACCGCAACAGAAGCCACCGCCGCTGGGGAGGCC
GACACCGAGGCGGACGCGACAAAAATAGCCGCTGAAGTGGCAGCCATCAA
GCCGATGAAGATTAAGGAGATCAAGGCCGAGCTGGAAGAGAGAGGGGTAG
AGTGGAGAGATTTGCTGGAAAAAAATGAATTTTCGTTGAGGTTGGCCGAG
GCACGCGTCAGAGGCACCACGAAGTCCCCGCCACCTGTGGAGGATGAGAA
GAAGAAGGAGGAGAACGAGAGCGTGGACACAGCGGAACAACCCCGAGCGG
AATCGTCGTCGTCATCGGCATCATCGCCGCCTCCGCCTCCCAAGGAGCAG
CCGGCAGCAGGAGGAGCAGCAGCATCGGCGACGACTAAAATGGATGAGGC
GGCGCGGTACACCAAGGCCCTGGTCGAAGTGATGAAGCTCAAGGTTCGTA
CGCGGGAGAAACGCCAAAAGAACGCGCACGATTAGGACAAAAGGGGGAAC
TGATAAAAGGAAGTATTTCTGGAATAGATTAGTCCATTTACTAGGACAGA
AGAAAGAGAATAATTGATCTAATGTACGTAACATCCTATCAACACCCATT
CCTCCCTCCCTCCCTCCCACCCTCCCTCCCTCCCTCCCTCCCTCCTCCCT
CATTCTCCTTTTTTCCCACCAGATCACCGAAATAAAGAAAGAGCTCGACC
TACTTAAGATTCCGCACTCGAGCTTTTTCGAAAAACGCGAGTTTGCCGAA
GCCCTCGCTCGGGCCCGCGTCAACCCCCCTTCCAGCAGCAGCAGCAGTAG
TACCAGTCGGGGGGATAACGTCGACCCGGACGAAGATCCAAGTCAGTATC
GGTTTGTAGAAGTCAAACGGATGCCCAAGGAGGGCGGAGAAGGAGGAGGC
GGCGGGGGACCACGGGCTGGGGCAGGAGCGGGAGGGAGGGCCGGAGAGAG
ACCAGGGCCGGGTTCAGGAAGGGGAGGAGGGGGAGGTGATCCGTTCTCAG
ATATTTTCAACGCACGGGGTGGAGGCGGAGGAGCTTCAGCTGGAACCAGG
GCTGGGGGCGCATCGGGCGTGGGGGGGTTTGCCGACGCTTTCTTTAAGCA
GACCGGTGGTGCGAGGGGAGGAGGGGGAGGGAGCCCGTTTGGTGGGGGAG
GGTTTGGGGGCATGCCAGGCATGGGAGGGATTGACCCGAGCATGATAGCA
TCGATCATGTCAAACCCTCGGACACAAGCCGCATTTCAACGGGCACAGCA
AAATCCCAAGGTGATGGCAGCGTTGCAAGACGTCATGTCTAATCCGGCCA
ACATTGCCAAGTATGCGAATGATAAGGAGGTGACAAGCGTGTTGAATGAA
CTGCAAAGTTTATTTAGAAAGTAGAGAGCAAGGGAAGGGAGGTAGGACTG
GTAGGTGTAAAGATATCATTTATTTTGTTGGTCCTGTCCTGTCTAGGTAT
TTATGCCCAGTCCGTTCTACGTGGTTTGTCTGGCGACGCCTTACGTGCAA
TACATGATAGTAGTAGCAGCAGCAGCCGTAGCAGCGGCGGGAAGTCTCAG
TCAAAAAACGTGAAGTGAGGAAAGAAAAAGGAAGAAATCAACGTCAGACG
ATTACTGAAGAAGGAGAAAAGAAGAAGGAGCTCCTTGGCCTTTTCTGCTG
TCGCTGCCGTGGCTCCCCCTGGCCGCCCAACCGTCTGCCTAATCCGAAGA
GGTGTGCGAAGAGAAAAGCTCGGGTGCGCTCGCGGCCTGAAAGCGTCTCG
CTGCTGCTACCCCTTCCACATCCTTGTGCGTCGCTCACGTTGCCGCTGCC
GTCGCACTTTCGTTGACGGTCCTTGAGGGGCACCCAATGAAATCACTCGG
CCTGCTGGTGCTGCGGCTGCCGCTGGTGTCGCTGCTGGTGCTGCTCCTCC
CTCGTTGCTGTCGGTGTCACCGCTGTCGATGTCTACCGCGCTGGGATAGC
CGGCTTCCTTGCCGTTTAGTGCGTCGGAGTTGGTGACACTCCCTTGGTCG
TCCTGGCTGCTGCCTCGGCCGCCGCACTGATCCTCGCTGTCGCTGCTGCT
GTCGCTGCTGCTGTCGCTGTCGCAACCGCAATGAGCGTTGTCGCTGCCCG
T

Coding sequence (CDS) from alignment at scaffold_9:266876..270126+

>mRNA_4638 ID=mRNA_4638|Name=jgi.p|Nanoce1779_2|587299|organism=Nannochloropsis oceanica|type=CDS|length=2082bp|location=Sequence derived from alignment at scaffold_9:266876..270126+ (Nannochloropsis oceanica)
ATGAAGATTAAGGAGATCAAGGCCGAGCTGGAAGAGAGAGGGGTAGAGTG
GAGAGATTTGCTGGAAAAAAATGAATTTTCGTTGAGGTTGGCCGAGGCAC
GCGTCAGAGGCACCACGAAGTCCCCGCCACCTGTGGAGGATGAGAAGAAG
AAGGAGGAGAACGAGAGCGTGGACACAGCGGAACAACCCCGAGCGGAATC
GTCGTCGTCATCGGCATCATCGCCGCCTCCGCCTCCCAAGGAGCAGCCGG
CAGCAGGAGGAGCAGCAGCATCGGCGACGACTAAAATGGATGAGGCGGCG
CGGTACACCAAGGCCCTGGTCGAAGTGATGAAGCTCAAGATCACCGAAAT
AAAGAAAGAGCTCGACCTACTTAAGATTCCGCACTCGAGCTTTTTCGAAA
AACGCGAGTTTGCCGAAGCCCTCGCTCGGGCCCGCGTCAACCCCCCTTCC
AGCAGCAGCAGCAGTAGTACCAGTCGGGGGGATAACGTCGACCCGGACGA
AGATCCAAGTCAGTATCGGTTTGTAGAAGTCAAACGGATGCCCAAGGAGG
GCGGAGAAGGAGGAGGCGGCGGGGGACCACGGGCTGGGGCAGGAGCGGGA
GGGAGGGCCGGAGAGAGACCAGGGCCGGGTTCAGGAAGGGGAGGAGGGGG
AGGTGATCCGTTCTCAGATATTTTCAACGCACGGGGTGGAGGCGGAGGAG
CTTCAGCTGGAACCAGGGCTGGGGGCGCATCGGGCGTGGGGGGGTTTGCC
GACGCTTTCTTTAAGCAGACCGGTGGTGCGAGGGGAGGAGGGGGAGGGAG
CCCGTTTGGTGGGGGAGGGTTTGGGGGCATGCCAGGCATGGGAGGGATTG
ACCCGAGCATGATAGCATCGATCATGTCAAACCCTCGGACACAAGCCGCA
TTTCAACGGGCACAGCAAAATCCCAAGGTGATGGCAGCGTTGCAAGACGT
CATGTCTAATCCGGCCAACATTGCCAAGTATGCGAATGATAAGGAGGTGA
CAAGCGTGTTGAATGAACTGCAAAGTTTATTTAGAAAGTAGATGAAGATT
AAGGAGATCAAGGCCGAGCTGGAAGAGAGAGGGGTAGAGTGGAGAGATTT
GCTGGAAAAAAATGAATTTTCGTTGAGGTTGGCCGAGGCACGCGTCAGAG
GCACCACGAAGTCCCCGCCACCTGTGGAGGATGAGAAGAAGAAGGAGGAG
AACGAGAGCGTGGACACAGCGGAACAACCCCGAGCGGAATCGTCGTCGTC
ATCGGCATCATCGCCGCCTCCGCCTCCCAAGGAGCAGCCGGCAGCAGGAG
GAGCAGCAGCATCGGCGACGACTAAAATGGATGAGGCGGCGCGGTACACC
AAGGCCCTGGTCGAAGTGATGAAGCTCAAGATCACCGAAATAAAGAAAGA
GCTCGACCTACTTAAGATTCCGCACTCGAGCTTTTTCGAAAAACGCGAGT
TTGCCGAAGCCCTCGCTCGGGCCCGCGTCAACCCCCCTTCCAGCAGCAGC
AGCAGTAGTACCAGTCGGGGGGATAACGTCGACCCGGACGAAGATCCAAG
TCAGTATCGGTTTGTAGAAGTCAAACGGATGCCCAAGGAGGGCGGAGAAG
GAGGAGGCGGCGGGGGACCACGGGCTGGGGCAGGAGCGGGAGGGAGGGCC
GGAGAGAGACCAGGGCCGGGTTCAGGAAGGGGAGGAGGGGGAGGTGATCC
GTTCTCAGATATTTTCAACGCACGGGGTGGAGGCGGAGGAGCTTCAGCTG
GAACCAGGGCTGGGGGCGCATCGGGCGTGGGGGGGTTTGCCGACGCTTTC
TTTAAGCAGACCGGTGGTGCGAGGGGAGGAGGGGGAGGGAGCCCGTTTGG
TGGGGGAGGGTTTGGGGGCATGCCAGGCATGGGAGGGATTGACCCGAGCA
TGATAGCATCGATCATGTCAAACCCTCGGACACAAGCCGCATTTCAACGG
GCACAGCAAAATCCCAAGGTGATGGCAGCGTTGCAAGACGTCATGTCTAA
TCCGGCCAACATTGCCAAGTATGCGAATGATAAGGAGGTGACAAGCGTGT
TGAATGAACTGCAAAGTTTATTTAGAAAGTAG

Synonyms

Publications