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Properties
| Property Name | Value |
|---|
| TranscriptId | 587384 |
| Track | FilteredModels2 |
| ProteinId | 587298 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_9 | supercontig | scaffold_9:266876..268670 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4637 ID=mRNA_4637|Name=jgi.p|Nanoce1779_2|587298|organism=Nannochloropsis oceanica|type=mRNA|length=1795bp
GCATTATGCACATCTAGTACTTTAGAATTTTGCCAATCAGAAAGGGACGA
GTTTTTTGTAGAGCCAGCGAGTTAAAAATAATAATAAATTATTTCACTAA
ATCGATAAGCTAGCATAAAATCTGGAACCCGCATGGAATTCTATACTCAT
GTAAGAAGAGTCAAGATCCAATCAGATTAATGTCGTGTTTGATCGTATGG
TCTGGATTCACTCGACCGGAGTTAGAAGCTGGCGCGCGAACACTCATCAA
TGCAAGCACTCGCGCCAAAAACTCCGTCTTTCCAGTTCGAGAAAGTGGCG
GCCTGCTACTGTATATTACCTTTGCGCTACGAGAAGGACACGATACAAAC
CTATCTATTCATATGACGCAGGACAAGACCCTCGTGCGTGTTCCTACACA
TGCGGACATGTCGGTGAAGGATGAGGTCTTGCTTAGTCGTCATTTGTCAT
CCAAAAACTGCCATAAAAGTCAGAGTATCTGGCCTCCTCTTGACTACGCC
ACGCTCACCTCTCCCTGCAAACAAAGCCTCACATACAAAACAGCCACCAT
GCGACGACGGAATTTAGGGTTGGTCGGTCTTTTCTGGAGCGGCGCATTAT
CCTCTGCCTTTGTCTTCCCGGTGAAACCATTGGGGGCCAGCCGCCATGTG
ATGGAACAGCAGAAGCATATCACGGTGAGTCTCATCATAACGCGGCAACC
CTAGAAGTCGCACGCTCGATTATTAGGGCGACTTGTGTGCAGCATGGAAA
AAGACGCACGTTCAAGTAAGGGCAGACAGGGGTTCCGCACAATTTGAAGA
TTGTCATTATTTTGGGCCCCTTGCGTCCTCGCCACGTCTTCGCCAGCACA
GACAAGACACGCACAAAGCGGCCTTGTCGTGCTCCCTTCGCAACCCCGTG
ATACTCCACCCACGCACCATTCATCTTGACTCTTGCCTTTCCCGGCCTCT
CTCCGCCCACCTTTTTGTTACAGTAACCCATTCAAATACAGCAACGGTGC
TGTTCCAAATATGTGTCCATCCACTCACACCCCATCCCTTTGTATCTCCA
CCTTTTCTCCTCCCATCGACTCAGCCGTGTAGCCTTTCCACATTCCAGCC
CAGTATCAGCGGCAGTATCTGTGACAGCGGAAGAAGAAGAATTTTCTTTC
CTTTCTCAAGGACAGCAACCGCAACAGAAGCCACCGCCGCTGGGGAGGCC
GACACCGAGGCGGACGCGACAAAAATAGCCGCTGAAGTGGCAGCCATCAA
GCCGATGAAGATTAAGGAGATCAAGGCCGAGCTGGAAGAGAGAGGGGTAG
AGTGGAGAGATTTGCTGGAAAAAAATGAATTTTCGTTGAGGTTGGCCGAG
GCACGCGTCAGAGGCACCACGAAGTCCCCGCCACCTGTGGAGGATGAGAA
GAAGAAGGAGGAGAACGAGAGCGTGGACACAGCGGAACAACCCCGAGCGG
AATCGTCGTCGTCATCGGCATCATCGCCGCCTCCGCCTCCCAAGGAGCAG
CCGGCAGCAGGAGGAGCAGCAGCATCGGCGACGACTAAAATGGATGAGGC
GGCGCGGTACACCAAGGCCCTGGTCGAAGTGATGAAGCTCAAGGTTCGTA
CGCGGGAGAAACGCCAAAAGAACGCGCACGATTAGGACAAAAGGGGGAAC
TGATAAAAGGAAGTATTTCTGGAATAGATTAGTCCATTTACTAGGACAGA
AGAAAGAGAATAATTGATCTAATGTACGTAACATCCTATCAACACCCATT
CCTCCCTCCCTCCCTCCCACCCTCCCTCCCTCCCTCCCTCCCTCC back to topprotein sequence of jgi.p|Nanoce1779_2|587298 >mRNA_4637-protein ID=mRNA_4637-protein|Name=jgi.p|Nanoce1779_2|587298|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MSCLIVWSGFTRPELEAGARTLINASTRAKNSVFPVRESGGLLLYITFAL
REGHDTNLSIHMTQDKTLVRVPTHADMSVKDEVLLSRHLSSKNCHKSQSI
WPPLDYATLTSPCKQSLTYKTATMRRRNLGLVGLFWSGALSSAFVFPVKP
LGASRHVMEQQKHITVSLIITRQP* back to topmRNA from alignment at scaffold_9:266876..268670+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4637 ID=mRNA_4637|Name=jgi.p|Nanoce1779_2|587298|organism=Nannochloropsis oceanica|type=mRNA|length=1795bp|location=Sequence derived from alignment at scaffold_9:266876..268670+ (Nannochloropsis oceanica)
GCATTATGCACATCTAGTACTTTAGAATTTTGCCAATCAGAAAGGGACGA
GTTTTTTGTAGAGCCAGCGAGTTAAAAATAATAATAAATTATTTCACTAA
ATCGATAAGCTAGCATAAAATCTGGAACCCGCATGGAATTCTATACTCAT
GTAAGAAGAGTCAAGATCCAATCAGATTAATGTCGTGTTTGATCGTATGG
TCTGGATTCACTCGACCGGAGTTAGAAGCTGGCGCGCGAACACTCATCAA
TGCAAGCACTCGCGCCAAAAACTCCGTCTTTCCAGTTCGAGAAAGTGGCG
GCCTGCTACTGTATATTACCTTTGCGCTACGAGAAGGACACGATACAAAC
CTATCTATTCATATGACGCAGGACAAGACCCTCGTGCGTGTTCCTACACA
TGCGGACATGTCGGTGAAGGATGAGGTCTTGCTTAGTCGTCATTTGTCAT
CCAAAAACTGCCATAAAAGTCAGAGTATCTGGCCTCCTCTTGACTACGCC
ACGCTCACCTCTCCCTGCAAACAAAGCCTCACATACAAAACAGCCACCAT
GCGACGACGGAATTTAGGGTTGGTCGGTCTTTTCTGGAGCGGCGCATTAT
CCTCTGCCTTTGTCTTCCCGGTGAAACCATTGGGGGCCAGCCGCCATGTG
ATGGAACAGCAGAAGCATATCACGGTGAGTCTCATCATAACGCGGCAACC
CTAGAAGTCGCACGCTCGATTATTAGGGCGACTTGTGTGCAGCATGGAAA
AAGACGCACGTTCAAGTAAGGGCAGACAGGGGTTCCGCACAATTTGAAGA
TTGTCATTATTTTGGGCCCCTTGCGTCCTCGCCACGTCTTCGCCAGCACA
GACAAGACACGCACAAAGCGGCCTTGTCGTGCTCCCTTCGCAACCCCGTG
ATACTCCACCCACGCACCATTCATCTTGACTCTTGCCTTTCCCGGCCTCT
CTCCGCCCACCTTTTTGTTACAGTAACCCATTCAAATACAGCAACGGTGC
TGTTCCAAATATGTGTCCATCCACTCACACCCCATCCCTTTGTATCTCCA
CCTTTTCTCCTCCCATCGACTCAGCCGTGTAGCCTTTCCACATTCCAGCC
CAGTATCAGCGGCAGTATCTGTGACAGCGGAAGAAGAAGAATTTTCTTTC
CTTTCTCAAGGACAGCAACCGCAACAGAAGCCACCGCCGCTGGGGAGGCC
GACACCGAGGCGGACGCGACAAAAATAGCCGCTGAAGTGGCAGCCATCAA
GCCGATGAAGATTAAGGAGATCAAGGCCGAGCTGGAAGAGAGAGGGGTAG
AGTGGAGAGATTTGCTGGAAAAAAATGAATTTTCGTTGAGGTTGGCCGAG
GCACGCGTCAGAGGCACCACGAAGTCCCCGCCACCTGTGGAGGATGAGAA
GAAGAAGGAGGAGAACGAGAGCGTGGACACAGCGGAACAACCCCGAGCGG
AATCGTCGTCGTCATCGGCATCATCGCCGCCTCCGCCTCCCAAGGAGCAG
CCGGCAGCAGGAGGAGCAGCAGCATCGGCGACGACTAAAATGGATGAGGC
GGCGCGGTACACCAAGGCCCTGGTCGAAGTGATGAAGCTCAAGGTTCGTA
CGCGGGAGAAACGCCAAAAGAACGCGCACGATTAGGACAAAAGGGGGAAC
TGATAAAAGGAAGTATTTCTGGAATAGATTAGTCCATTTACTAGGACAGA
AGAAAGAGAATAATTGATCTAATGTACGTAACATCCTATCAACACCCATT
CCTCCCTCCCTCCCTCCCACCCTCCCTCCCTCCCTCCCTCCCTCC back to topCoding sequence (CDS) from alignment at scaffold_9:266876..268670+ >mRNA_4637 ID=mRNA_4637|Name=jgi.p|Nanoce1779_2|587298|organism=Nannochloropsis oceanica|type=CDS|length=525bp|location=Sequence derived from alignment at scaffold_9:266876..268670+ (Nannochloropsis oceanica)
ATGTCGTGTTTGATCGTATGGTCTGGATTCACTCGACCGGAGTTAGAAGC
TGGCGCGCGAACACTCATCAATGCAAGCACTCGCGCCAAAAACTCCGTCT
TTCCAGTTCGAGAAAGTGGCGGCCTGCTACTGTATATTACCTTTGCGCTA
CGAGAAGGACACGATACAAACCTATCTATTCATATGACGCAGGACAAGAC
CCTCGTGCGTGTTCCTACACATGCGGACATGTCGGTGAAGGATGAGGTCT
TGCTTAGTCGTCATTTGTCATCCAAAAACTGCCATAAAAGTCAGAGTATC
TGGCCTCCTCTTGACTACGCCACGCTCACCTCTCCCTGCAAACAAAGCCT
CACATACAAAACAGCCACCATGCGACGACGGAATTTAGGGTTGGTCGGTC
TTTTCTGGAGCGGCGCATTATCCTCTGCCTTTGTCTTCCCGGTGAAACCA
TTGGGGGCCAGCCGCCATGTGATGGAACAGCAGAAGCATATCACGGTGAG
TCTCATCATAACGCGGCAACCCTAG back to top
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