jgi.p|Nanoce1779_2|438295, mRNA_4636 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|438295
Unique NamemRNA_4636
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length928
Alignment locationscaffold_9:263644..265180 -

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Properties
Property NameValue
TranscriptId438381
TrackFilteredModels2
ProteinId438295
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:263644..265180 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|438295gene_4636Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|438295mRNA_4636-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4636CDS_4636Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4636 ID=mRNA_4636|Name=jgi.p|Nanoce1779_2|438295|organism=Nannochloropsis oceanica|type=mRNA|length=928bp
ACAGAGTGCTTGCGGACACTAAGGAGCACCACATACTTCTGGACTGGGGC
ATTTCTGTGCGACTACGAATAGAACATGGGGGAACCAGGCGCGGCCGGCG
CTGTGCCATCAGGCATGAGCAAGACTGTCTTCGTGGGTAATCTCTCATGG
AGCACCACGGCAGACAACCTTAAGGCAATAATGGAGACGGCAGCCCCCGT
CACCGACGTGGAAGTGCAGACGCATAGCGACACGGGTCGCTCCAAGGGTT
GGGCCCTTGTGACATTCGACGGTCCCGATGGCGTGAATAGGGCGATTGAG
CTGCTGAGCGGGAGGGAGGTGGAAGGACGGCCATTATACATCCGAGAGGA
CCGCACGGACATCGAGCAGGAAGAGGGATTCGTCGTCTTTGTGGGGAACC
TCCCTTGGGAGATGACGGCCGAGGGTCTCCGCGGGGTGTTTTGCGACTTC
AGCCCCTACGACGTGCATATCAAGACCAACATGTCTGGGCGTTCCCGCGG
CTTTGGTTTGCTTCGTTTCCGTTCCTCCGATGAGGCCCAACGGGCCATTG
AGCAGATGCATGGCTGCGTCGTGAAGGACAGAAAGATCTTGGTTCGATTG
GATAGGGCACATTTGGAGATGATGGGGAAGAGTCCGGCGACGATGGAAGT
GAGTGAGACGGTAACCTGCGGAAACATTCCTTGGCATACGGGCGACGAGG
TCCTGGCATGCCACATGGCCCAGGCGGGACGGTTGGTCTCGTGTCAGATT
CAGAGGCATGCGGATACGCTGAGGAGCAAAGGGTGGGCGTAAGTGCTCGG
TGGAAAGGGGGGGGGATAAGTGGAGAGGGAGCGAGCGAGGGAAGGTTAGG
ATTTTGTCGGTCATCTTCACTTCACCCTGAGGCTTGCCGCGATATGTCCT
TGTCGTTCTCATACGAAAGCATTCGGCT
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protein sequence of jgi.p|Nanoce1779_2|438295

>mRNA_4636-protein ID=mRNA_4636-protein|Name=jgi.p|Nanoce1779_2|438295|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MGEPGAAGAVPSGMSKTVFVGNLSWSTTADNLKAIMETAAPVTDVEVQTH
SDTGRSKGWALVTFDGPDGVNRAIELLSGREVEGRPLYIREDRTDIEQEE
GFVVFVGNLPWEMTAEGLRGVFCDFSPYDVHIKTNMSGRSRGFGLLRFRS
SDEAQRAIEQMHGCVVKDRKILVRLDRAHLEMMGKSPATMEVSETVTCGN
IPWHTGDEVLACHMAQAGRLVSCQIQRHADTLRSKGWA*
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mRNA from alignment at scaffold_9:263644..265180-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4636 ID=mRNA_4636|Name=jgi.p|Nanoce1779_2|438295|organism=Nannochloropsis oceanica|type=mRNA|length=1537bp|location=Sequence derived from alignment at scaffold_9:263644..265180- (Nannochloropsis oceanica)
ACAGAGTGCTTGCGGACACTAAGGAGCACCACATACTTCTGGACTGGGGC
ATTTCTGTGCGACTACGAATAGAACATGGGGGAACCAGGCGCGGCCGGCG
CTGTGCCATCAGGCATGAGCAAGACTGTCTTCGTGGTAAGTGCAAAGCGG
GAAAAGGATACCCTTTAACCATATACCACATCAGGACATGTTGGGCCCAA
ATGAACGAAGCTTGTCGTCCCAGGTATTCGGGCGCGACACCATCTCCCGG
ACCCCCCATTTCATCCAAAAACTGCAGGCGTGCACTTGTGAGAACGTCCC
GACATCTGCACTCACCCTTCTCTCCCATGCAATTATCATGTTCAAACATC
CTTCAACCCCAGGGTAATCTCTCATGGAGCACCACGGCAGACAACCTTAA
GGCAATAATGGAGACGGCAGCCCCCGTCACCGACGTGGAAGTGCAGACGC
ATAGCGACACGGGTCGCTCCAAGGGTTGGGCGTAAGTGATCCTGCTGAGA
GGACGGAAGGATGGAACTGCTTGTACCGTGTGTCTATGTGTATCAAGTAG
TCGGTGCCTTATTCCCGTGCCCGTGGTCGGTATATGACAACAGAGAGAGC
CCTCGACGGAGGTCTTTTCATGTGACAGTGTCATTATATCATTTCCTCCA
CCCCCCCCCCCCTTTCTCCTCCCTTGCTTCTAGCCTTGTGACATTCGACG
GTCCCGATGGCGTGAATAGGGCGATTGAGCTGCTGAGCGGGAGGGAGGTG
GAAGGACGGCCATTATACATCCGAGAGGACCGCACGGACATCGAGCAGGA
AGAGGGATTCGTCGTCTTTGTACGTGGAATCAAGAGAGGGGCAAGAGGGA
GGGCAGGGATAGATAGTGAGGAGGGAGAAGATAGGAGGCGGCGCCTTGGT
TGCCATTGTCCTCACTGTCGCGCGGCCAGTCCATTTTTTACTGTATACTG
TCCCTTTTTCCTGAGTACTCCCGTCTGATTCGTTCTGGTCCTTAAATAGG
TGGGGAACCTCCCTTGGGAGATGACGGCCGAGGGTCTCCGCGGGGTGTTT
TGCGACTTCAGCCCCTACGACGTGCATATCAAGACCAACATGTCTGGGCG
TTCCCGCGGCTTTGGTTTGCTTCGTTTCCGTTCCTCCGATGAGGCCCAAC
GGGCCATTGAGCAGATGCATGGCTGCGTCGTGAAGGACAGAAAGATCTTG
GTTCGATTGGATAGGGCACATTTGGAGATGATGGGGAAGAGTCCGGCGAC
GATGGAAGTGAGTGAGACGGTAACCTGCGGAAACATTCCTTGGCATACGG
GCGACGAGGTCCTGGCATGCCACATGGCCCAGGCGGGACGGTTGGTCTCG
TGTCAGATTCAGAGGCATGCGGATACGCTGAGGAGCAAAGGGTGGGCGTA
AGTGCTCGGTGGAAAGGGGGGGGGATAAGTGGAGAGGGAGCGAGCGAGGG
AAGGTTAGGATTTTGTCGGTCATCTTCACTTCACCCTGAGGCTTGCCGCG
ATATGTCCTTGTCGTTCTCATACGAAAGCATTCGGCT
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Coding sequence (CDS) from alignment at scaffold_9:263644..265180-

>mRNA_4636 ID=mRNA_4636|Name=jgi.p|Nanoce1779_2|438295|organism=Nannochloropsis oceanica|type=CDS|length=2868bp|location=Sequence derived from alignment at scaffold_9:263644..265180- (Nannochloropsis oceanica)
GTGGGGAACCTCCCTTGGGAGATGACGGCCGAGGGTCTCCGCGGGGTGTT
TTGCGACTTCAGCCCCTACGACGTGCATATCAAGACCAACATGTCTGGGC
GTTCCCGCGGCTTTGGTTTGCTTCGTTTCCGTTCCTCCGATGAGGCCCAA
CGGGCCATTGAGCAGATGCATGGCTGCGTCGTGAAGGACAGAAAGATCTT
GGTTCGATTGGATAGGGCACATTTGGAGATGATGGGGAAGAGTCCGGCGA
CGATGGAAGTGAGTGAGACGGTAACCTGCGGAAACATTCCTTGGCATACG
GGCGACGAGGTCCTGGCATGCCACATGGCCCAGGCGGGACGGTTGGTCTC
GTGTCAGATTCAGAGGCATGCGGATACGCTGAGGAGCAAAGGGTGGGCGT
AACCTTGTGACATTCGACGGTCCCGATGGCGTGAATAGGGCGATTGAGCT
GCTGAGCGGGAGGGAGGTGGAAGGACGGCCATTATACATCCGAGAGGACC
GCACGGACATCGAGCAGGAAGAGGGATTCGTCGTCTTTGGTAATCTCTCA
TGGAGCACCACGGCAGACAACCTTAAGGCAATAATGGAGACGGCAGCCCC
CGTCACCGACGTGGAAGTGCAGACGCATAGCGACACGGGTCGCTCCAAGG
GTTGGGCATGGGGGAACCAGGCGCGGCCGGCGCTGTGCCATCAGGCATGA
GCAAGACTGTCTTCGTGGTGGGGAACCTCCCTTGGGAGATGACGGCCGAG
GGTCTCCGCGGGGTGTTTTGCGACTTCAGCCCCTACGACGTGCATATCAA
GACCAACATGTCTGGGCGTTCCCGCGGCTTTGGTTTGCTTCGTTTCCGTT
CCTCCGATGAGGCCCAACGGGCCATTGAGCAGATGCATGGCTGCGTCGTG
AAGGACAGAAAGATCTTGGTTCGATTGGATAGGGCACATTTGGAGATGAT
GGGGAAGAGTCCGGCGACGATGGAAGTGAGTGAGACGGTAACCTGCGGAA
ACATTCCTTGGCATACGGGCGACGAGGTCCTGGCATGCCACATGGCCCAG
GCGGGACGGTTGGTCTCGTGTCAGATTCAGAGGCATGCGGATACGCTGAG
GAGCAAAGGGTGGGCGTAACCTTGTGACATTCGACGGTCCCGATGGCGTG
AATAGGGCGATTGAGCTGCTGAGCGGGAGGGAGGTGGAAGGACGGCCATT
ATACATCCGAGAGGACCGCACGGACATCGAGCAGGAAGAGGGATTCGTCG
TCTTTGGTAATCTCTCATGGAGCACCACGGCAGACAACCTTAAGGCAATA
ATGGAGACGGCAGCCCCCGTCACCGACGTGGAAGTGCAGACGCATAGCGA
CACGGGTCGCTCCAAGGGTTGGGCATGGGGGAACCAGGCGCGGCCGGCGC
TGTGCCATCAGGCATGAGCAAGACTGTCTTCGTGGTGGGGAACCTCCCTT
GGGAGATGACGGCCGAGGGTCTCCGCGGGGTGTTTTGCGACTTCAGCCCC
TACGACGTGCATATCAAGACCAACATGTCTGGGCGTTCCCGCGGCTTTGG
TTTGCTTCGTTTCCGTTCCTCCGATGAGGCCCAACGGGCCATTGAGCAGA
TGCATGGCTGCGTCGTGAAGGACAGAAAGATCTTGGTTCGATTGGATAGG
GCACATTTGGAGATGATGGGGAAGAGTCCGGCGACGATGGAAGTGAGTGA
GACGGTAACCTGCGGAAACATTCCTTGGCATACGGGCGACGAGGTCCTGG
CATGCCACATGGCCCAGGCGGGACGGTTGGTCTCGTGTCAGATTCAGAGG
CATGCGGATACGCTGAGGAGCAAAGGGTGGGCGTAACCTTGTGACATTCG
ACGGTCCCGATGGCGTGAATAGGGCGATTGAGCTGCTGAGCGGGAGGGAG
GTGGAAGGACGGCCATTATACATCCGAGAGGACCGCACGGACATCGAGCA
GGAAGAGGGATTCGTCGTCTTTGGTAATCTCTCATGGAGCACCACGGCAG
ACAACCTTAAGGCAATAATGGAGACGGCAGCCCCCGTCACCGACGTGGAA
GTGCAGACGCATAGCGACACGGGTCGCTCCAAGGGTTGGGCATGGGGGAA
CCAGGCGCGGCCGGCGCTGTGCCATCAGGCATGAGCAAGACTGTCTTCGT
GGTGGGGAACCTCCCTTGGGAGATGACGGCCGAGGGTCTCCGCGGGGTGT
TTTGCGACTTCAGCCCCTACGACGTGCATATCAAGACCAACATGTCTGGG
CGTTCCCGCGGCTTTGGTTTGCTTCGTTTCCGTTCCTCCGATGAGGCCCA
ACGGGCCATTGAGCAGATGCATGGCTGCGTCGTGAAGGACAGAAAGATCT
TGGTTCGATTGGATAGGGCACATTTGGAGATGATGGGGAAGAGTCCGGCG
ACGATGGAAGTGAGTGAGACGGTAACCTGCGGAAACATTCCTTGGCATAC
GGGCGACGAGGTCCTGGCATGCCACATGGCCCAGGCGGGACGGTTGGTCT
CGTGTCAGATTCAGAGGCATGCGGATACGCTGAGGAGCAAAGGGTGGGCG
TAACCTTGTGACATTCGACGGTCCCGATGGCGTGAATAGGGCGATTGAGC
TGCTGAGCGGGAGGGAGGTGGAAGGACGGCCATTATACATCCGAGAGGAC
CGCACGGACATCGAGCAGGAAGAGGGATTCGTCGTCTTTGGTAATCTCTC
ATGGAGCACCACGGCAGACAACCTTAAGGCAATAATGGAGACGGCAGCCC
CCGTCACCGACGTGGAAGTGCAGACGCATAGCGACACGGGTCGCTCCAAG
GGTTGGGCATGGGGGAACCAGGCGCGGCCGGCGCTGTGCCATCAGGCATG
AGCAAGACTGTCTTCGTG
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Synonyms
Publications