jgi.p|Nanoce1779_2|587286, mRNA_4635 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587286
Unique NamemRNA_4635
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length991
Alignment locationscaffold_9:260756..262128 +

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Properties
Property NameValue
TranscriptId587372
TrackFilteredModels2
ProteinId587286
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:260756..262128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587286gene_4635Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587286mRNA_4635-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4635CDS_4635Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4635 ID=mRNA_4635|Name=jgi.p|Nanoce1779_2|587286|organism=Nannochloropsis oceanica|type=mRNA|length=991bp
ACAGGCATATACAAGGGCAACGAAGTTTATATCAAGGAGCGACCGCAGCA
TGCGCGAAGCTGGGACACGATTTCTGTAAAGGGTTCTGGCGGATGGGAGA
CGTGCGGCCGTGGAGGGCACTTCCTCTTCTGATTTTTCGCCTCGTACTCT
TGAGCACGTTGCAGCCGACCATGTCTTTCATAGCTTTCCAAACCCAGCGC
CTCGCCTCCACCCTGCGCATCTGTTCTACAACAGCCACCACCACCATTTA
CCCCACACGCGCCTTTCGGGCCACCCCGACCTGCGGCCTCCAAATCAACA
TTCACATACGGGGCAAGCGCACGGGCGGCGAAGAATACCTCAACGACGCT
TACCTTGAGTACACAAAGCGCCTGAGACCTGTTTTAGAACTCGAGACCAT
ATGGCACAAGACAGATGAGGAGCTAAAGGCTGCCGTAGCCAAGGAGAAAG
CACCTGTTATTTGTCTCGATGAACGGGGGAAACAGCTACCGTCATTAGAG
TTAGCGGACGTGCTTTATAAGCGATTGGAAGAGGGTGGTTCTCGGCTAGT
GTTTGTGATCGGGGGCGCCGAGGGCCTGCCCTCCGCCTTGAAAAACAAGG
AGCTTTGGAGTTTGTCCAAGTTGACCTTCACACATCAGTGGGCTCGTGTT
TTGCTGACAGAGCAGATATATCGAGCGACGGAGATAAAGAAGGGAAGTGG
ATATCATAAGGAGTAGTGAGAGCTTCGTTGTGGGAGAGGGAATCCCCCAT
TCTAGGTGTGCTTATTCAGGGTTCACATTTATTTTGTTCGTAAGTGAGCT
GGGAAGAGGGGATGAAAGCTCAGGGAAAGTGTGAATTCTTATGGATCTTA
AACATAATGAAGGGAAATTCAAATGAAGAAAAGCAATGAGTCACGGATAT
GAAGATCCGGGTACATGCTTATCTTGGATAGAAACACACAGGGAAGTGCG
AGGAAAGGAAGTGGAAGAGGACGTTGGAACTCGCGTGGATA
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protein sequence of jgi.p|Nanoce1779_2|587286

>mRNA_4635-protein ID=mRNA_4635-protein|Name=jgi.p|Nanoce1779_2|587286|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MGDVRPWRALPLLIFRLVLLSTLQPTMSFIAFQTQRLASTLRICSTTATT
TIYPTRAFRATPTCGLQINIHIRGKRTGGEEYLNDAYLEYTKRLRPVLEL
ETIWHKTDEELKAAVAKEKAPVICLDERGKQLPSLELADVLYKRLEEGGS
RLVFVIGGAEGLPSALKNKELWSLSKLTFTHQWARVLLTEQIYRATEIKK
GSGYHKE*
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mRNA from alignment at scaffold_9:260756..262128+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4635 ID=mRNA_4635|Name=jgi.p|Nanoce1779_2|587286|organism=Nannochloropsis oceanica|type=mRNA|length=1373bp|location=Sequence derived from alignment at scaffold_9:260756..262128+ (Nannochloropsis oceanica)
ACAGGCATATACAAGGGCAACGAAGTTTATATCAAGGAGCGACCGCAGCA
TGCGCGAAGCTGGGACACGATTTCTGTAAAGGGTTCTGGCGGATGGGAGA
CGTGCGGCCGTGGAGGTACGCCAAAAAAAAAGACCCTCGGGCTCCATCTT
TAAGAATCGTTTATGCAATTTGTGCTCTTTCGAAATCCATATTCGACAGA
CCCTCACAATGATTTAGCTCAACGCTTCCTCTCCGCCCTCGTGTCCTCAA
TCCCAAACCCCAAACCCCATCCCTTCTGTCCCCACCCGTACCAGGGCACT
TCCTCTTCTGATTTTTCGCCTCGTACTCTTGAGCACGTTGCAGCCGACCA
TGTCTTTCATAGCTTTCCAAACCCAGCGCCTCGCCTCCACCCTGCGCATC
TGTTCTACAACAGCCACCACCACCATTTACCCCACACGCGCCTTTCGGGC
CACCCCGACCTGCGGCCTCCAAATCAACATTCACATACGGGGCAAGCGCA
CGGGCGGCGAAGAATACCTCAACGACGCTTACCTTGAGTACACAAAGCGC
CTGAGACCTGTTTTAGAACTCGAGACCATATGGCACAAGACAGATGAGGA
GCTAAAGGCTGCCGTAGCCAAGGAGAAAGCACCTGTTATTTGTCTCGATG
AACGGGGGAAACAGCTACCGTCATTAGAGTTAGCGGACGTGCTTTATAAG
CGATTGGAAGAGGGTAAGTGAAAGACAGGCAAAAAGAGTTTTGGTGTAAT
ATCAAAAAATTGTGACATAGGTCATTGGAAGCATTCATGGCTTTCCTTTC
ATTGTCTTTATGCGACTCCTGGCCGTTTTCTCGCTTTATCTTCGTCTAGA
GCCGCCAAGCATTGTGCCATGTCCGCCCTACACATTTCAGCTCCTTTCCC
CTACCCCTCCCTTCAGGTGGTTCTCGGCTAGTGTTTGTGATCGGGGGCGC
CGAGGGCCTGCCCTCCGCCTTGAAAAACAAGGAGCTTTGGAGTTTGTCCA
AGTTGACCTTCACACATCAGTGGGCTCGTGTTTTGCTGACAGAGCAGATA
TATCGAGCGACGGAGATAAAGAAGGGAAGTGGATATCATAAGGAGTAGTG
AGAGCTTCGTTGTGGGAGAGGGAATCCCCCATTCTAGGTGTGCTTATTCA
GGGTTCACATTTATTTTGTTCGTAAGTGAGCTGGGAAGAGGGGATGAAAG
CTCAGGGAAAGTGTGAATTCTTATGGATCTTAAACATAATGAAGGGAAAT
TCAAATGAAGAAAAGCAATGAGTCACGGATATGAAGATCCGGGTACATGC
TTATCTTGGATAGAAACACACAGGGAAGTGCGAGGAAAGGAAGTGGAAGA
GGACGTTGGAACTCGCGTGGATA
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Coding sequence (CDS) from alignment at scaffold_9:260756..262128+

>mRNA_4635 ID=mRNA_4635|Name=jgi.p|Nanoce1779_2|587286|organism=Nannochloropsis oceanica|type=CDS|length=1872bp|location=Sequence derived from alignment at scaffold_9:260756..262128+ (Nannochloropsis oceanica)
ATGGGAGACGTGCGGCCGTGGAGGGCACTTCCTCTTCTGATTTTTCGCCT
CGTACTCTTGAGCACGTTGCAGCCGACCATGTCTTTCATAGCTTTCCAAA
CCCAGCGCCTCGCCTCCACCCTGCGCATCTGTTCTACAACAGCCACCACC
ACCATTTACCCCACACGCGCCTTTCGGGCCACCCCGACCTGCGGCCTCCA
AATCAACATTCACATACGGGGCAAGCGCACGGGCGGCGAAGAATACCTCA
ACGACGCTTACCTTGAGTACACAAAGCGCCTGAGACCTGTTTTAGAACTC
GAGACCATATGGCACAAGACAGATGAGGAGCTAAAGGCTGCCGTAGCCAA
GGAGAAAGCACCTGTTATTTGTCTCGATGAACGGGGGAAACAGCTACCGT
CATTAGAGTTAGCGGACGTGCTTTATAAGCGATTGGAAGAGGGTGGTTCT
CGGCTAGTGTTTGTGATCGGGGGCGCCGAGGGCCTGCCCTCCGCCTTGAA
AAACAAGGAGCTTTGGAGTTTGTCCAAGTTGACCTTCACACATCAGTGGG
CTCGTGTTTTGCTGACAGAGCAGATATATCGAGCGACGGAGATAAAGAAG
GGAAGTGGATATCATAAGGAGTAGATGGGAGACGTGCGGCCGTGGAGGGC
ACTTCCTCTTCTGATTTTTCGCCTCGTACTCTTGAGCACGTTGCAGCCGA
CCATGTCTTTCATAGCTTTCCAAACCCAGCGCCTCGCCTCCACCCTGCGC
ATCTGTTCTACAACAGCCACCACCACCATTTACCCCACACGCGCCTTTCG
GGCCACCCCGACCTGCGGCCTCCAAATCAACATTCACATACGGGGCAAGC
GCACGGGCGGCGAAGAATACCTCAACGACGCTTACCTTGAGTACACAAAG
CGCCTGAGACCTGTTTTAGAACTCGAGACCATATGGCACAAGACAGATGA
GGAGCTAAAGGCTGCCGTAGCCAAGGAGAAAGCACCTGTTATTTGTCTCG
ATGAACGGGGGAAACAGCTACCGTCATTAGAGTTAGCGGACGTGCTTTAT
AAGCGATTGGAAGAGGGTGGTTCTCGGCTAGTGTTTGTGATCGGGGGCGC
CGAGGGCCTGCCCTCCGCCTTGAAAAACAAGGAGCTTTGGAGTTTGTCCA
AGTTGACCTTCACACATCAGTGGGCTCGTGTTTTGCTGACAGAGCAGATA
TATCGAGCGACGGAGATAAAGAAGGGAAGTGGATATCATAAGGAGTAGAT
GGGAGACGTGCGGCCGTGGAGGGCACTTCCTCTTCTGATTTTTCGCCTCG
TACTCTTGAGCACGTTGCAGCCGACCATGTCTTTCATAGCTTTCCAAACC
CAGCGCCTCGCCTCCACCCTGCGCATCTGTTCTACAACAGCCACCACCAC
CATTTACCCCACACGCGCCTTTCGGGCCACCCCGACCTGCGGCCTCCAAA
TCAACATTCACATACGGGGCAAGCGCACGGGCGGCGAAGAATACCTCAAC
GACGCTTACCTTGAGTACACAAAGCGCCTGAGACCTGTTTTAGAACTCGA
GACCATATGGCACAAGACAGATGAGGAGCTAAAGGCTGCCGTAGCCAAGG
AGAAAGCACCTGTTATTTGTCTCGATGAACGGGGGAAACAGCTACCGTCA
TTAGAGTTAGCGGACGTGCTTTATAAGCGATTGGAAGAGGGTGGTTCTCG
GCTAGTGTTTGTGATCGGGGGCGCCGAGGGCCTGCCCTCCGCCTTGAAAA
ACAAGGAGCTTTGGAGTTTGTCCAAGTTGACCTTCACACATCAGTGGGCT
CGTGTTTTGCTGACAGAGCAGATATATCGAGCGACGGAGATAAAGAAGGG
AAGTGGATATCATAAGGAGTAG
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Synonyms
Publications