jgi.p|Nanoce1779_2|587283, mRNA_4633 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|587283
Unique Name	mRNA_4633
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2643
Alignment location	scaffold_9:256498..259140 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	587369
Track	FilteredModels2
ProteinId	587283

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:256498..259140 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587283	gene_4633	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587283	mRNA_4633-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4633	CDS_4633	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:256498..259140+
coding sequence from alignment at scaffold_9:256498..259140+

mRNA sequence

>mRNA_4633 ID=mRNA_4633|Name=jgi.p|Nanoce1779_2|587283|organism=Nannochloropsis oceanica|type=mRNA|length=2643bp
GAAGGTGGAGGAGGAGAGGGAGGACACAGGCGCCGACGCCGATACAGATG
ATAGTGACCACGACAACAATAGTGAAAGTGAGAGAGACGACAAGGAAGAG
AGCGGCAGTAGCAGCAGCGGCAACAGTAGCAGTGATGACGACGAGCAAGA
CGAGGACGACGAGGAAGGGGTGGTTGATGACTTGGCCATGGCGGCATTGG
CCGCGGGGCTGGATGAAATGAGTGCCCCCACAGGGGCGTTAATGAATGCC
CTTCAGCCTTCCCTACGGCAGAGCGTGGATGAGATTGTGGACGATAGGAC
AGGGCCTTTGCTGCAAATTTTAAAGGAGGTGGAGGAACGCTGCGGTGATG
ATGGTGAGGGTGCCATCATTGCTGGTAAGGTTGAGGGAGTGGAGGGGGAA
GAAGCAGCGGTAGAGCAGGAAGAGGAGGAGAATGATGATGACGATAATGA
TGACGAGTCTATTCCTGGCCTCGGACTGGATTTGCCTTCGGACGATGATG
ACGAAGATGGGGGGGGAAGACGTAAGAAGAAAGGAGTAGGGTTGCGAGGT
CCCAAGACTCAAAATGAGGTGGTGGAGGTGATCCAACCCAAGGAAAAGGA
GGTAGAGGAAGAAGCAGAAGTCGCTGCACTAGGGTTGACCGAATCAGATG
ATATTGTCCCGTGTGGGACGGTACTGGCCGCACTTGAAGACGAGAGGATA
ATCGTCGTACAGGCGCCTAGTCTGGCGAAGCAGGACGGGGGGATGAATAG
GCCTTTGGACGAGGGGAGTTGGTTGTGTTTAATGGAGGGGAGAATAGTTT
TGGGGAAGGTGAAGGAGGTTTTTGGGCCTGTGACACAGCCTTGTTATCGT
TTGCATTACAGAGCGGGATTATTGCCTGCAGCTGCTGTTGAACGAGGAGG
AGGAGGAGGAGCAGCAGCAGCAGGAGGAGCAGCAGAGGAGGGAGGTAATG
GCAGCAGCAGCAGCAACAGAACAACGACGACAGCAGCAGATGCTGTGAAT
ATTGCAATAAAGCCTGGTTTAGAGGTTGGATATGTGGCTCGACTGACAGA
CTTCATCGTGCCTCAGTCCCTGGCAAGCAAAGGGACGGATGCCTCCAATG
TCCACGACGAGGAGGTCGGGGTGGAGGAGCAGGAGTACTCTGACGACGAA
GCTGAAGCTGCAGCCAAGGCAGCAAGGAAGAAGAATAAGAAAGTCTCGGG
AGCAAAGGAGGATGGGGGACTACTGAGTGTTGATCCACCAGGTGCGGCTG
AGACGGCGATAGGAGTAGGTGGGGTAGGAGGACGAGGAGTGAAAAGAGGC
GGGAGGGGGGGAAAGAGGGAGGTAGGACGGGGAAGAGGATGTTTTGGAGA
GAGGGGAGGGAGGTTTGGCGGTCGGGTGGGGGGGGTAGGGAGGGAGGGGA
GAGGAGGACAAGGAGGAAGTGACTATCAGCCTTTCCAGCAGCAGCTCCCC
ACCTTCAGTGCTGGAGGGAGGGTTGGGATCATCGGTTTTGGAGGGAGAGG
AGAAGAGGGGGAAGGTGGAGGTGGAGGTGGAGGTGGAGGAAGAGGAATAA
GATGGACTTACTTCCCTCATCAACCACAACCAGGCTTCTACCCCACTCCC
CCTTCTCCTCCTTCCCTTCCTCTTTCCGTCCCTCATCGACACACAACTCC
GGCATATTCCGCTGGTGCTCTTCCAGGCCAGCCTCCCCTTCCTCCCGGGC
CTCCTCCCCTTCACCAAACCTCACAACAATTCTACCTGCCCGCACCACAG
CCGCATCAGCAGTATTTTCACCACCACCTCCAGCAGCAGCAGCAGCCACC
ACCGCCTTCTTCTATCGCTGCTCGTCCTCCTCATCATGGCCATATGCCTG
TAGCTCTTTCTTATACGGACAGTGTGCCGGGTCATCACATGCAGCAACCG
CAGCGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTCTATTC
CCCTTCACGTCTTCAGCAACACGAGCAACGTTATCCCATGCAGCACCAGC
AGCAGCTGCAGTTTCTCCAACCGTCCTGGCCACACCCGTCGCCGCCGCAA
CAGCAGTATCATCACCAACAGCAACGATCTCATCAGCCGGTGGCACCACA
ACAGCAGCACCAGCAGCAATACTGTCCTCAGCACCACCAGCCTCAGCTGC
AACAGCAGCACGTGCAGCAACAGCACCTACAGCAAGGGTCGTGGCATCAC
CAGCAGCAGCAGCAGCAGTTTCAAGCTCCTGGCGGCCAGCCGCAGCCGCC
GCCACCACCGGGATGGAGGCATGGGTAAAAGAAGAGGAAAATGGAAAGAA
CGAGATAGAGAGTAAAAAATCGAGGAAGAGGAGGAAGACAAATAGGCGAG
AATGGAGAGGAAGAAGAGGAAGAGGGAGGACAAGGACTGAAATGGTGTGA
CTAGTGGCGGTGAAAGAAAAGGGCAAGATATGCTCTTACTCTCATCGATA
CCCCTCCCCCCAACATGCAAACATACAGACACATACACACACCCTCTCTT
AATTACATACGCACTCGCACACGCAAAGATAGAAGAAACACCAAGGTCCA
AGTAAAAAAAAAGATTGGATCAAGGCACAAAAGAAGTGATTTAATTTAGG
ATTCCCCAGAGAGAGAAAGAAAAGTACCACTACATGCATAAAG

protein sequence of jgi.p|Nanoce1779_2|587283

>mRNA_4633-protein ID=mRNA_4633-protein|Name=jgi.p|Nanoce1779_2|587283|organism=Nannochloropsis oceanica|type=polypeptide|length=697bp
MAALAAGLDEMSAPTGALMNALQPSLRQSVDEIVDDRTGPLLQILKEVEE
RCGDDGEGAIIAGKVEGVEGEEAAVEQEEEENDDDDNDDESIPGLGLDLP
SDDDDEDGGGRRKKKGVGLRGPKTQNEVVEVIQPKEKEVEEEAEVAALGL
TESDDIVPCGTVLAALEDERIIVVQAPSLAKQDGGMNRPLDEGSWLCLME
GRIVLGKVKEVFGPVTQPCYRLHYRAGLLPAAAVERGGGGGAAAAGGAAE
EGGNGSSSSNRTTTTAADAVNIAIKPGLEVGYVARLTDFIVPQSLASKGT
DASNVHDEEVGVEEQEYSDDEAEAAAKAARKKNKKVSGAKEDGGLLSVDP
PGAAETAIGVGGVGGRGVKRGGRGGKREVGRGRGCFGERGGRFGGRVGGV
GREGRGGQGGSDYQPFQQQLPTFSAGGRVGIIGFGGRGEEGEGGGGGGGG
GRGIRWTYFPHQPQPGFYPTPPSPPSLPLSVPHRHTTPAYSAGALPGQPP
LPPGPPPLHQTSQQFYLPAPQPHQQYFHHHLQQQQQPPPPSSIAARPPHH
GHMPVALSYTDSVPGHHMQQPQRQQQQQQQQQQQQLYSPSRLQQHEQRYP
MQHQQQLQFLQPSWPHPSPPQQQYHHQQQRSHQPVAPQQQHQQQYCPQHH
QPQLQQQHVQQQHLQQGSWHHQQQQQQFQAPGGQPQPPPPPGWRHG*

mRNA from alignment at scaffold_9:256498..259140+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4633 ID=mRNA_4633|Name=jgi.p|Nanoce1779_2|587283|organism=Nannochloropsis oceanica|type=mRNA|length=2643bp|location=Sequence derived from alignment at scaffold_9:256498..259140+ (Nannochloropsis oceanica)
GAAGGTGGAGGAGGAGAGGGAGGACACAGGCGCCGACGCCGATACAGATG
ATAGTGACCACGACAACAATAGTGAAAGTGAGAGAGACGACAAGGAAGAG
AGCGGCAGTAGCAGCAGCGGCAACAGTAGCAGTGATGACGACGAGCAAGA
CGAGGACGACGAGGAAGGGGTGGTTGATGACTTGGCCATGGCGGCATTGG
CCGCGGGGCTGGATGAAATGAGTGCCCCCACAGGGGCGTTAATGAATGCC
CTTCAGCCTTCCCTACGGCAGAGCGTGGATGAGATTGTGGACGATAGGAC
AGGGCCTTTGCTGCAAATTTTAAAGGAGGTGGAGGAACGCTGCGGTGATG
ATGGTGAGGGTGCCATCATTGCTGGTAAGGTTGAGGGAGTGGAGGGGGAA
GAAGCAGCGGTAGAGCAGGAAGAGGAGGAGAATGATGATGACGATAATGA
TGACGAGTCTATTCCTGGCCTCGGACTGGATTTGCCTTCGGACGATGATG
ACGAAGATGGGGGGGGAAGACGTAAGAAGAAAGGAGTAGGGTTGCGAGGT
CCCAAGACTCAAAATGAGGTGGTGGAGGTGATCCAACCCAAGGAAAAGGA
GGTAGAGGAAGAAGCAGAAGTCGCTGCACTAGGGTTGACCGAATCAGATG
ATATTGTCCCGTGTGGGACGGTACTGGCCGCACTTGAAGACGAGAGGATA
ATCGTCGTACAGGCGCCTAGTCTGGCGAAGCAGGACGGGGGGATGAATAG
GCCTTTGGACGAGGGGAGTTGGTTGTGTTTAATGGAGGGGAGAATAGTTT
TGGGGAAGGTGAAGGAGGTTTTTGGGCCTGTGACACAGCCTTGTTATCGT
TTGCATTACAGAGCGGGATTATTGCCTGCAGCTGCTGTTGAACGAGGAGG
AGGAGGAGGAGCAGCAGCAGCAGGAGGAGCAGCAGAGGAGGGAGGTAATG
GCAGCAGCAGCAGCAACAGAACAACGACGACAGCAGCAGATGCTGTGAAT
ATTGCAATAAAGCCTGGTTTAGAGGTTGGATATGTGGCTCGACTGACAGA
CTTCATCGTGCCTCAGTCCCTGGCAAGCAAAGGGACGGATGCCTCCAATG
TCCACGACGAGGAGGTCGGGGTGGAGGAGCAGGAGTACTCTGACGACGAA
GCTGAAGCTGCAGCCAAGGCAGCAAGGAAGAAGAATAAGAAAGTCTCGGG
AGCAAAGGAGGATGGGGGACTACTGAGTGTTGATCCACCAGGTGCGGCTG
AGACGGCGATAGGAGTAGGTGGGGTAGGAGGACGAGGAGTGAAAAGAGGC
GGGAGGGGGGGAAAGAGGGAGGTAGGACGGGGAAGAGGATGTTTTGGAGA
GAGGGGAGGGAGGTTTGGCGGTCGGGTGGGGGGGGTAGGGAGGGAGGGGA
GAGGAGGACAAGGAGGAAGTGACTATCAGCCTTTCCAGCAGCAGCTCCCC
ACCTTCAGTGCTGGAGGGAGGGTTGGGATCATCGGTTTTGGAGGGAGAGG
AGAAGAGGGGGAAGGTGGAGGTGGAGGTGGAGGTGGAGGAAGAGGAATAA
GATGGACTTACTTCCCTCATCAACCACAACCAGGCTTCTACCCCACTCCC
CCTTCTCCTCCTTCCCTTCCTCTTTCCGTCCCTCATCGACACACAACTCC
GGCATATTCCGCTGGTGCTCTTCCAGGCCAGCCTCCCCTTCCTCCCGGGC
CTCCTCCCCTTCACCAAACCTCACAACAATTCTACCTGCCCGCACCACAG
CCGCATCAGCAGTATTTTCACCACCACCTCCAGCAGCAGCAGCAGCCACC
ACCGCCTTCTTCTATCGCTGCTCGTCCTCCTCATCATGGCCATATGCCTG
TAGCTCTTTCTTATACGGACAGTGTGCCGGGTCATCACATGCAGCAACCG
CAGCGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTCTATTC
CCCTTCACGTCTTCAGCAACACGAGCAACGTTATCCCATGCAGCACCAGC
AGCAGCTGCAGTTTCTCCAACCGTCCTGGCCACACCCGTCGCCGCCGCAA
CAGCAGTATCATCACCAACAGCAACGATCTCATCAGCCGGTGGCACCACA
ACAGCAGCACCAGCAGCAATACTGTCCTCAGCACCACCAGCCTCAGCTGC
AACAGCAGCACGTGCAGCAACAGCACCTACAGCAAGGGTCGTGGCATCAC
CAGCAGCAGCAGCAGCAGTTTCAAGCTCCTGGCGGCCAGCCGCAGCCGCC
GCCACCACCGGGATGGAGGCATGGGTAAAAGAAGAGGAAAATGGAAAGAA
CGAGATAGAGAGTAAAAAATCGAGGAAGAGGAGGAAGACAAATAGGCGAG
AATGGAGAGGAAGAAGAGGAAGAGGGAGGACAAGGACTGAAATGGTGTGA
CTAGTGGCGGTGAAAGAAAAGGGCAAGATATGCTCTTACTCTCATCGATA
CCCCTCCCCCCAACATGCAAACATACAGACACATACACACACCCTCTCTT
AATTACATACGCACTCGCACACGCAAAGATAGAAGAAACACCAAGGTCCA
AGTAAAAAAAAAGATTGGATCAAGGCACAAAAGAAGTGATTTAATTTAGG
ATTCCCCAGAGAGAGAAAGAAAAGTACCACTACATGCATAAAG

Coding sequence (CDS) from alignment at scaffold_9:256498..259140+

>mRNA_4633 ID=mRNA_4633|Name=jgi.p|Nanoce1779_2|587283|organism=Nannochloropsis oceanica|type=CDS|length=2091bp|location=Sequence derived from alignment at scaffold_9:256498..259140+ (Nannochloropsis oceanica)
ATGGCGGCATTGGCCGCGGGGCTGGATGAAATGAGTGCCCCCACAGGGGC
GTTAATGAATGCCCTTCAGCCTTCCCTACGGCAGAGCGTGGATGAGATTG
TGGACGATAGGACAGGGCCTTTGCTGCAAATTTTAAAGGAGGTGGAGGAA
CGCTGCGGTGATGATGGTGAGGGTGCCATCATTGCTGGTAAGGTTGAGGG
AGTGGAGGGGGAAGAAGCAGCGGTAGAGCAGGAAGAGGAGGAGAATGATG
ATGACGATAATGATGACGAGTCTATTCCTGGCCTCGGACTGGATTTGCCT
TCGGACGATGATGACGAAGATGGGGGGGGAAGACGTAAGAAGAAAGGAGT
AGGGTTGCGAGGTCCCAAGACTCAAAATGAGGTGGTGGAGGTGATCCAAC
CCAAGGAAAAGGAGGTAGAGGAAGAAGCAGAAGTCGCTGCACTAGGGTTG
ACCGAATCAGATGATATTGTCCCGTGTGGGACGGTACTGGCCGCACTTGA
AGACGAGAGGATAATCGTCGTACAGGCGCCTAGTCTGGCGAAGCAGGACG
GGGGGATGAATAGGCCTTTGGACGAGGGGAGTTGGTTGTGTTTAATGGAG
GGGAGAATAGTTTTGGGGAAGGTGAAGGAGGTTTTTGGGCCTGTGACACA
GCCTTGTTATCGTTTGCATTACAGAGCGGGATTATTGCCTGCAGCTGCTG
TTGAACGAGGAGGAGGAGGAGGAGCAGCAGCAGCAGGAGGAGCAGCAGAG
GAGGGAGGTAATGGCAGCAGCAGCAGCAACAGAACAACGACGACAGCAGC
AGATGCTGTGAATATTGCAATAAAGCCTGGTTTAGAGGTTGGATATGTGG
CTCGACTGACAGACTTCATCGTGCCTCAGTCCCTGGCAAGCAAAGGGACG
GATGCCTCCAATGTCCACGACGAGGAGGTCGGGGTGGAGGAGCAGGAGTA
CTCTGACGACGAAGCTGAAGCTGCAGCCAAGGCAGCAAGGAAGAAGAATA
AGAAAGTCTCGGGAGCAAAGGAGGATGGGGGACTACTGAGTGTTGATCCA
CCAGGTGCGGCTGAGACGGCGATAGGAGTAGGTGGGGTAGGAGGACGAGG
AGTGAAAAGAGGCGGGAGGGGGGGAAAGAGGGAGGTAGGACGGGGAAGAG
GATGTTTTGGAGAGAGGGGAGGGAGGTTTGGCGGTCGGGTGGGGGGGGTA
GGGAGGGAGGGGAGAGGAGGACAAGGAGGAAGTGACTATCAGCCTTTCCA
GCAGCAGCTCCCCACCTTCAGTGCTGGAGGGAGGGTTGGGATCATCGGTT
TTGGAGGGAGAGGAGAAGAGGGGGAAGGTGGAGGTGGAGGTGGAGGTGGA
GGAAGAGGAATAAGATGGACTTACTTCCCTCATCAACCACAACCAGGCTT
CTACCCCACTCCCCCTTCTCCTCCTTCCCTTCCTCTTTCCGTCCCTCATC
GACACACAACTCCGGCATATTCCGCTGGTGCTCTTCCAGGCCAGCCTCCC
CTTCCTCCCGGGCCTCCTCCCCTTCACCAAACCTCACAACAATTCTACCT
GCCCGCACCACAGCCGCATCAGCAGTATTTTCACCACCACCTCCAGCAGC
AGCAGCAGCCACCACCGCCTTCTTCTATCGCTGCTCGTCCTCCTCATCAT
GGCCATATGCCTGTAGCTCTTTCTTATACGGACAGTGTGCCGGGTCATCA
CATGCAGCAACCGCAGCGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCTCTATTCCCCTTCACGTCTTCAGCAACACGAGCAACGTTATCCC
ATGCAGCACCAGCAGCAGCTGCAGTTTCTCCAACCGTCCTGGCCACACCC
GTCGCCGCCGCAACAGCAGTATCATCACCAACAGCAACGATCTCATCAGC
CGGTGGCACCACAACAGCAGCACCAGCAGCAATACTGTCCTCAGCACCAC
CAGCCTCAGCTGCAACAGCAGCACGTGCAGCAACAGCACCTACAGCAAGG
GTCGTGGCATCACCAGCAGCAGCAGCAGCAGTTTCAAGCTCCTGGCGGCC
AGCCGCAGCCGCCGCCACCACCGGGATGGAGGCATGGGTAA

Synonyms

Publications