jgi.p|Nanoce1779_2|666316, mRNA_4632 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|666316
Unique NamemRNA_4632
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length956
Alignment locationscaffold_9:255197..256152 -

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Properties
Property NameValue
TranscriptId666402
TrackFilteredModels2
ProteinId666316
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:255197..256152 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|666316gene_4632Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4632CDS_4632Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|666316mRNA_4632-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4632 ID=mRNA_4632|Name=jgi.p|Nanoce1779_2|666316|organism=Nannochloropsis oceanica|type=mRNA|length=956bp
GGATGATCCTAACATCCGCCGCAGCCGCGGCACCAAAAGGCCCACATGCA
AAGAGACAAGCAGGCAAGAAACGACGCCGCTCCGCCGCCTTCACTGGCTC
TCAATCACACGACTTTCACGACCTGTGTATCGAAATGAGCCCCGCTATCA
CCACGGTCCAGCACGTACAAGAGACAACACGCCGGCTAGGCCAGCTAGGG
TACGCCAGCGTGGCGTTCAACGAGACGGTCGTCGGGCGTGACGGCGTGCG
TGGGTTGGACAGGCCAGGCTTGAAAAAAGCACGTAACACTCTCTGGCTGG
CCGCGCAGGGGGGGCCAAAAGAAAATGGTCCTGTCACACGCCTACGACGG
GTCACTATCATTGTGAGTGATAAAGGCGAGGCGCAGTTTCTGTGTGGGGT
CATTCGTAGCTTGAAATGGGCGGATTTGGTGGCAGCACGCCCGACATCCG
ACAGTGCCCTGCAGCTCTTGTGTGAGGCGGGGGATGTGGACATCATTTCC
TTAGACTTAAGCATTCGCCAAGGCTTTATATTGAGTACGCACCTGGCGGA
TGTGGCTCGGGCACGTGGGATAGTGTTTGAAGTACGATATGCTGGGTTGA
TTTTGGCGGAATGCGCGACGAAACGACAGCAGATCATGGCGAATGTGAGT
GGGCTTCTGGCAGCAACGAGGGGGAGGGGGATAGTCTGGTGTAGTGGAGC
CAATGCGGGAGTGGCGGGAGAGTGTTTGAGAGGGGCTTATGATGTAATGA
ATCTGGCGGTGGTGTTGGGTTTGAAGGAAGAGCAGGCATTGAGGGCTATG
ACAGCGACGTGTGAGGGAGTGAGAGGGCATGCGAAGGCGAGAAGGATGGA
GTGGATACCGGCTGAAGTGATTAGGACGTGGAAGAGTGAGGGGAGGGAGG
AAGAGGAGGGGGAGGGGGAAAGGATGGTGGTGATGGGAGAGGGAGGGGAG
GGGTGA
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protein sequence of jgi.p|Nanoce1779_2|666316

>mRNA_4632-protein ID=mRNA_4632-protein|Name=jgi.p|Nanoce1779_2|666316|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp
MILTSAAAAAPKGPHAKRQAGKKRRRSAAFTGSQSHDFHDLCIEMSPAIT
TVQHVQETTRRLGQLGYASVAFNETVVGRDGVRGLDRPGLKKARNTLWLA
AQGGPKENGPVTRLRRVTIIVSDKGEAQFLCGVIRSLKWADLVAARPTSD
SALQLLCEAGDVDIISLDLSIRQGFILSTHLADVARARGIVFEVRYAGLI
LAECATKRQQIMANVSGLLAATRGRGIVWCSGANAGVAGECLRGAYDVMN
LAVVLGLKEEQALRAMTATCEGVRGHAKARRMEWIPAEVIRTWKSEGREE
EEGEGERMVVMGEGGEG*
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mRNA from alignment at scaffold_9:255197..256152-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4632 ID=mRNA_4632|Name=jgi.p|Nanoce1779_2|666316|organism=Nannochloropsis oceanica|type=mRNA|length=956bp|location=Sequence derived from alignment at scaffold_9:255197..256152- (Nannochloropsis oceanica)
GGATGATCCTAACATCCGCCGCAGCCGCGGCACCAAAAGGCCCACATGCA
AAGAGACAAGCAGGCAAGAAACGACGCCGCTCCGCCGCCTTCACTGGCTC
TCAATCACACGACTTTCACGACCTGTGTATCGAAATGAGCCCCGCTATCA
CCACGGTCCAGCACGTACAAGAGACAACACGCCGGCTAGGCCAGCTAGGG
TACGCCAGCGTGGCGTTCAACGAGACGGTCGTCGGGCGTGACGGCGTGCG
TGGGTTGGACAGGCCAGGCTTGAAAAAAGCACGTAACACTCTCTGGCTGG
CCGCGCAGGGGGGGCCAAAAGAAAATGGTCCTGTCACACGCCTACGACGG
GTCACTATCATTGTGAGTGATAAAGGCGAGGCGCAGTTTCTGTGTGGGGT
CATTCGTAGCTTGAAATGGGCGGATTTGGTGGCAGCACGCCCGACATCCG
ACAGTGCCCTGCAGCTCTTGTGTGAGGCGGGGGATGTGGACATCATTTCC
TTAGACTTAAGCATTCGCCAAGGCTTTATATTGAGTACGCACCTGGCGGA
TGTGGCTCGGGCACGTGGGATAGTGTTTGAAGTACGATATGCTGGGTTGA
TTTTGGCGGAATGCGCGACGAAACGACAGCAGATCATGGCGAATGTGAGT
GGGCTTCTGGCAGCAACGAGGGGGAGGGGGATAGTCTGGTGTAGTGGAGC
CAATGCGGGAGTGGCGGGAGAGTGTTTGAGAGGGGCTTATGATGTAATGA
ATCTGGCGGTGGTGTTGGGTTTGAAGGAAGAGCAGGCATTGAGGGCTATG
ACAGCGACGTGTGAGGGAGTGAGAGGGCATGCGAAGGCGAGAAGGATGGA
GTGGATACCGGCTGAAGTGATTAGGACGTGGAAGAGTGAGGGGAGGGAGG
AAGAGGAGGGGGAGGGGGAAAGGATGGTGGTGATGGGAGAGGGAGGGGAG
GGGTGA
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Coding sequence (CDS) from alignment at scaffold_9:255197..256152-

>mRNA_4632 ID=mRNA_4632|Name=jgi.p|Nanoce1779_2|666316|organism=Nannochloropsis oceanica|type=CDS|length=954bp|location=Sequence derived from alignment at scaffold_9:255197..256152- (Nannochloropsis oceanica)
ATGATCCTAACATCCGCCGCAGCCGCGGCACCAAAAGGCCCACATGCAAA
GAGACAAGCAGGCAAGAAACGACGCCGCTCCGCCGCCTTCACTGGCTCTC
AATCACACGACTTTCACGACCTGTGTATCGAAATGAGCCCCGCTATCACC
ACGGTCCAGCACGTACAAGAGACAACACGCCGGCTAGGCCAGCTAGGGTA
CGCCAGCGTGGCGTTCAACGAGACGGTCGTCGGGCGTGACGGCGTGCGTG
GGTTGGACAGGCCAGGCTTGAAAAAAGCACGTAACACTCTCTGGCTGGCC
GCGCAGGGGGGGCCAAAAGAAAATGGTCCTGTCACACGCCTACGACGGGT
CACTATCATTGTGAGTGATAAAGGCGAGGCGCAGTTTCTGTGTGGGGTCA
TTCGTAGCTTGAAATGGGCGGATTTGGTGGCAGCACGCCCGACATCCGAC
AGTGCCCTGCAGCTCTTGTGTGAGGCGGGGGATGTGGACATCATTTCCTT
AGACTTAAGCATTCGCCAAGGCTTTATATTGAGTACGCACCTGGCGGATG
TGGCTCGGGCACGTGGGATAGTGTTTGAAGTACGATATGCTGGGTTGATT
TTGGCGGAATGCGCGACGAAACGACAGCAGATCATGGCGAATGTGAGTGG
GCTTCTGGCAGCAACGAGGGGGAGGGGGATAGTCTGGTGTAGTGGAGCCA
ATGCGGGAGTGGCGGGAGAGTGTTTGAGAGGGGCTTATGATGTAATGAAT
CTGGCGGTGGTGTTGGGTTTGAAGGAAGAGCAGGCATTGAGGGCTATGAC
AGCGACGTGTGAGGGAGTGAGAGGGCATGCGAAGGCGAGAAGGATGGAGT
GGATACCGGCTGAAGTGATTAGGACGTGGAAGAGTGAGGGGAGGGAGGAA
GAGGAGGGGGAGGGGGAAAGGATGGTGGTGATGGGAGAGGGAGGGGAGGG
GTGA
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Synonyms
Publications