jgi.p|Nanoce1779_2|587278, mRNA_4631 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|587278
Unique Name	mRNA_4631
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1918
Alignment location	scaffold_9:253235..255152 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	587364
Track	FilteredModels2
ProteinId	587278

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:253235..255152 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587278	gene_4631	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587278	mRNA_4631-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4631	CDS_4631	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:253235..255152+
coding sequence from alignment at scaffold_9:253235..255152+

mRNA sequence

>mRNA_4631 ID=mRNA_4631|Name=jgi.p|Nanoce1779_2|587278|organism=Nannochloropsis oceanica|type=mRNA|length=1918bp
ACAGATTGCAAACCCCTCCCCCCTGTCATCATCATGGTAGACGCGCTCCC
TCATCCCATCGGTGCCCATGACCCCCCGGTTCAGGACAAGCCCAAGCCTG
ACAACGGAAACGACAGGGCCATCATCCGGGAAGAACTCACAGCGTCTCAG
CCGCCCTCACCCGACTATATGCAATGCCACAAGGACTCGCTTATCCAAAG
CTTGACCGAGGAGCTGCTCAAGAGCAAGGAAGACGTCGCCCGCCTCACAA
AGGAACGCGCCTACTTCAAACGCAAGGCAGAATGGTGCACGATCGAAGAC
CAACGTATTCTCTCTCCTATCATTACCACCACTGACCACTGGCAAGAAAA
GACCTGGCTCCTGCTGCACGAGCCCATCCGTGGCGCCCTATTAGATTTCG
ATGAGTTGGTTAAATCACCTTCATTCGACCCTGTGATCTATCCTTGGAAA
GTGACCAACTTCTTCTATTATTTCAACACGGCTTTTGCGCCCTACGTTCG
TCGGCATCACCAGGCAGAGAAGAAGGTTTATGTCCCTTGGGTTGCCAGTA
GGGTGGAAGTCCCCGCTGCAGTGAGGGATGGATACAAGGCCATTGAGGAA
TCGATTCAAAAGGTGGAGCAGAGCGAAAGCGAGTACAAGGCCTTGGAGAA
GGCGATCCGGAAAGGAAAACTCCCACCATTGACAGCCGCTGACCTTGGTA
CGAGCACTGTCATTGCTGCAAGCTCCACGACGACGACAAAACCAACCACG
ACGATGACGACGGAGGGAGTGCCATCTGCTGTCAATCCTTCACTGACACC
CAGCGCTGCAGCTTCGTTAGAGTCGAAGCCCGCCAGTACCACCACCACCA
CCACCACCACTACCACCACCAGCACCACTAGCAGCGTCATCAACGTCACA
GCGGATGCTCCCTCCTCCTCCACCACCACCGATGTGGTGCCCGTATCTGC
CCCCTCCACATCCGCCCATCTCTCCTCTGTGTCCGCGCTTCCGCAGCTAC
CTCAGCTCTCCTCCTCCTTCCAGCTTCAGCAGGCAGAGCCACCACAAAAA
CAAGGCCCACTCTATGAGTGGCGCAGCATCTTAATCACCCGCCTCACACT
CCTGTCCAACCTCTTGACTGCACATATGGATGAAGAAGAGGCGTTCTTTC
CCCCTGTTATTTGTAGGCATTTTTCCGAAAAGGAGGAAGAAAAAGTCTTG
GAACAGATGTCCTCGGCGAGTGCAGCGCATCTAGAGATACCGATGGTTTT
GTTGGCCATGGACGTGTGGGGCACGCCCGAAATCCGAGAGGACTTCCTAA
AAAAGCTCTCACGGGCAGCACGATATACGGTAGAAAAGTATTGGTTGTCG
TCCTACAAAAAGTCAGTGGCTAAATCCCTGGAGTCGCTCGCTCTGGAGGA
ACCGCCCTCGTTCACAATCATTCCCCACATGTCTGTCAACCAGCTGTTGG
TGGCCGCGCCTGTCTTTCTCTTGTGCACCATCAGTTGAGGAGGGAAAGGT
TTGGCCCTAGCTTCACATATGTTTGTAAGTCGCCTCCTACATACATCTGA
ACGAGTTTAATGTGGATGGCGCCGGTATGATCCTTAAGTACTTTCAGCCA
AGGGGGGGGGGGAAGGAAGGAAGAGGGAGGTAGGGAAGGAGGAAAGGATA
ATGAAATTGCAAGTTTGACTGGGTCGAAAGACTTTTTAGGCAAGAAAAAT
ACAGAGGGAGTGGGATTGTGAAGGGGAAAAACAGATAAATTCACCTCTAT
TGCTTGCTTTACATCGGGGCCGGATAGATACGTGTGTATGGTGTACTGCC
ATGGTGTCGCATGAAAGCACCGAAGAAGAGGAGGGAGAAGAAGAGAAGGA
GAAGAAGATAGAAAAACTCATTGGAAATTTCACTTTCGGACACATTTCAA
AACAAGCGTTTGACTCAG

protein sequence of jgi.p|Nanoce1779_2|587278

>mRNA_4631-protein ID=mRNA_4631-protein|Name=jgi.p|Nanoce1779_2|587278|organism=Nannochloropsis oceanica|type=polypeptide|length=485bp
MVDALPHPIGAHDPPVQDKPKPDNGNDRAIIREELTASQPPSPDYMQCHK
DSLIQSLTEELLKSKEDVARLTKERAYFKRKAEWCTIEDQRILSPIITTT
DHWQEKTWLLLHEPIRGALLDFDELVKSPSFDPVIYPWKVTNFFYYFNTA
FAPYVRRHHQAEKKVYVPWVASRVEVPAAVRDGYKAIEESIQKVEQSESE
YKALEKAIRKGKLPPLTAADLGTSTVIAASSTTTTKPTTTMTTEGVPSAV
NPSLTPSAAASLESKPASTTTTTTTTTTTSTTSSVINVTADAPSSSTTTD
VVPVSAPSTSAHLSSVSALPQLPQLSSSFQLQQAEPPQKQGPLYEWRSIL
ITRLTLLSNLLTAHMDEEEAFFPPVICRHFSEKEEEKVLEQMSSASAAHL
EIPMVLLAMDVWGTPEIREDFLKKLSRAARYTVEKYWLSSYKKSVAKSLE
SLALEEPPSFTIIPHMSVNQLLVAAPVFLLCTIS*

mRNA from alignment at scaffold_9:253235..255152+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4631 ID=mRNA_4631|Name=jgi.p|Nanoce1779_2|587278|organism=Nannochloropsis oceanica|type=mRNA|length=1918bp|location=Sequence derived from alignment at scaffold_9:253235..255152+ (Nannochloropsis oceanica)
ACAGATTGCAAACCCCTCCCCCCTGTCATCATCATGGTAGACGCGCTCCC
TCATCCCATCGGTGCCCATGACCCCCCGGTTCAGGACAAGCCCAAGCCTG
ACAACGGAAACGACAGGGCCATCATCCGGGAAGAACTCACAGCGTCTCAG
CCGCCCTCACCCGACTATATGCAATGCCACAAGGACTCGCTTATCCAAAG
CTTGACCGAGGAGCTGCTCAAGAGCAAGGAAGACGTCGCCCGCCTCACAA
AGGAACGCGCCTACTTCAAACGCAAGGCAGAATGGTGCACGATCGAAGAC
CAACGTATTCTCTCTCCTATCATTACCACCACTGACCACTGGCAAGAAAA
GACCTGGCTCCTGCTGCACGAGCCCATCCGTGGCGCCCTATTAGATTTCG
ATGAGTTGGTTAAATCACCTTCATTCGACCCTGTGATCTATCCTTGGAAA
GTGACCAACTTCTTCTATTATTTCAACACGGCTTTTGCGCCCTACGTTCG
TCGGCATCACCAGGCAGAGAAGAAGGTTTATGTCCCTTGGGTTGCCAGTA
GGGTGGAAGTCCCCGCTGCAGTGAGGGATGGATACAAGGCCATTGAGGAA
TCGATTCAAAAGGTGGAGCAGAGCGAAAGCGAGTACAAGGCCTTGGAGAA
GGCGATCCGGAAAGGAAAACTCCCACCATTGACAGCCGCTGACCTTGGTA
CGAGCACTGTCATTGCTGCAAGCTCCACGACGACGACAAAACCAACCACG
ACGATGACGACGGAGGGAGTGCCATCTGCTGTCAATCCTTCACTGACACC
CAGCGCTGCAGCTTCGTTAGAGTCGAAGCCCGCCAGTACCACCACCACCA
CCACCACCACTACCACCACCAGCACCACTAGCAGCGTCATCAACGTCACA
GCGGATGCTCCCTCCTCCTCCACCACCACCGATGTGGTGCCCGTATCTGC
CCCCTCCACATCCGCCCATCTCTCCTCTGTGTCCGCGCTTCCGCAGCTAC
CTCAGCTCTCCTCCTCCTTCCAGCTTCAGCAGGCAGAGCCACCACAAAAA
CAAGGCCCACTCTATGAGTGGCGCAGCATCTTAATCACCCGCCTCACACT
CCTGTCCAACCTCTTGACTGCACATATGGATGAAGAAGAGGCGTTCTTTC
CCCCTGTTATTTGTAGGCATTTTTCCGAAAAGGAGGAAGAAAAAGTCTTG
GAACAGATGTCCTCGGCGAGTGCAGCGCATCTAGAGATACCGATGGTTTT
GTTGGCCATGGACGTGTGGGGCACGCCCGAAATCCGAGAGGACTTCCTAA
AAAAGCTCTCACGGGCAGCACGATATACGGTAGAAAAGTATTGGTTGTCG
TCCTACAAAAAGTCAGTGGCTAAATCCCTGGAGTCGCTCGCTCTGGAGGA
ACCGCCCTCGTTCACAATCATTCCCCACATGTCTGTCAACCAGCTGTTGG
TGGCCGCGCCTGTCTTTCTCTTGTGCACCATCAGTTGAGGAGGGAAAGGT
TTGGCCCTAGCTTCACATATGTTTGTAAGTCGCCTCCTACATACATCTGA
ACGAGTTTAATGTGGATGGCGCCGGTATGATCCTTAAGTACTTTCAGCCA
AGGGGGGGGGGGAAGGAAGGAAGAGGGAGGTAGGGAAGGAGGAAAGGATA
ATGAAATTGCAAGTTTGACTGGGTCGAAAGACTTTTTAGGCAAGAAAAAT
ACAGAGGGAGTGGGATTGTGAAGGGGAAAAACAGATAAATTCACCTCTAT
TGCTTGCTTTACATCGGGGCCGGATAGATACGTGTGTATGGTGTACTGCC
ATGGTGTCGCATGAAAGCACCGAAGAAGAGGAGGGAGAAGAAGAGAAGGA
GAAGAAGATAGAAAAACTCATTGGAAATTTCACTTTCGGACACATTTCAA
AACAAGCGTTTGACTCAG

Coding sequence (CDS) from alignment at scaffold_9:253235..255152+

>mRNA_4631 ID=mRNA_4631|Name=jgi.p|Nanoce1779_2|587278|organism=Nannochloropsis oceanica|type=CDS|length=1455bp|location=Sequence derived from alignment at scaffold_9:253235..255152+ (Nannochloropsis oceanica)
ATGGTAGACGCGCTCCCTCATCCCATCGGTGCCCATGACCCCCCGGTTCA
GGACAAGCCCAAGCCTGACAACGGAAACGACAGGGCCATCATCCGGGAAG
AACTCACAGCGTCTCAGCCGCCCTCACCCGACTATATGCAATGCCACAAG
GACTCGCTTATCCAAAGCTTGACCGAGGAGCTGCTCAAGAGCAAGGAAGA
CGTCGCCCGCCTCACAAAGGAACGCGCCTACTTCAAACGCAAGGCAGAAT
GGTGCACGATCGAAGACCAACGTATTCTCTCTCCTATCATTACCACCACT
GACCACTGGCAAGAAAAGACCTGGCTCCTGCTGCACGAGCCCATCCGTGG
CGCCCTATTAGATTTCGATGAGTTGGTTAAATCACCTTCATTCGACCCTG
TGATCTATCCTTGGAAAGTGACCAACTTCTTCTATTATTTCAACACGGCT
TTTGCGCCCTACGTTCGTCGGCATCACCAGGCAGAGAAGAAGGTTTATGT
CCCTTGGGTTGCCAGTAGGGTGGAAGTCCCCGCTGCAGTGAGGGATGGAT
ACAAGGCCATTGAGGAATCGATTCAAAAGGTGGAGCAGAGCGAAAGCGAG
TACAAGGCCTTGGAGAAGGCGATCCGGAAAGGAAAACTCCCACCATTGAC
AGCCGCTGACCTTGGTACGAGCACTGTCATTGCTGCAAGCTCCACGACGA
CGACAAAACCAACCACGACGATGACGACGGAGGGAGTGCCATCTGCTGTC
AATCCTTCACTGACACCCAGCGCTGCAGCTTCGTTAGAGTCGAAGCCCGC
CAGTACCACCACCACCACCACCACCACTACCACCACCAGCACCACTAGCA
GCGTCATCAACGTCACAGCGGATGCTCCCTCCTCCTCCACCACCACCGAT
GTGGTGCCCGTATCTGCCCCCTCCACATCCGCCCATCTCTCCTCTGTGTC
CGCGCTTCCGCAGCTACCTCAGCTCTCCTCCTCCTTCCAGCTTCAGCAGG
CAGAGCCACCACAAAAACAAGGCCCACTCTATGAGTGGCGCAGCATCTTA
ATCACCCGCCTCACACTCCTGTCCAACCTCTTGACTGCACATATGGATGA
AGAAGAGGCGTTCTTTCCCCCTGTTATTTGTAGGCATTTTTCCGAAAAGG
AGGAAGAAAAAGTCTTGGAACAGATGTCCTCGGCGAGTGCAGCGCATCTA
GAGATACCGATGGTTTTGTTGGCCATGGACGTGTGGGGCACGCCCGAAAT
CCGAGAGGACTTCCTAAAAAAGCTCTCACGGGCAGCACGATATACGGTAG
AAAAGTATTGGTTGTCGTCCTACAAAAAGTCAGTGGCTAAATCCCTGGAG
TCGCTCGCTCTGGAGGAACCGCCCTCGTTCACAATCATTCCCCACATGTC
TGTCAACCAGCTGTTGGTGGCCGCGCCTGTCTTTCTCTTGTGCACCATCA
GTTGA

Synonyms

Publications