jgi.p|Nanoce1779_2|587264, mRNA_4629 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|587264
Unique Name	mRNA_4629
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1522
Alignment location	scaffold_9:249080..250725 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	587350
Track	FilteredModels2
ProteinId	587264

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:249080..250725 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587264	gene_4629	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587264	mRNA_4629-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4629	CDS_4629	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:249080..250725+
coding sequence from alignment at scaffold_9:249080..250725+

mRNA sequence

>mRNA_4629 ID=mRNA_4629|Name=jgi.p|Nanoce1779_2|587264|organism=Nannochloropsis oceanica|type=mRNA|length=1522bp
AGCACAGGCAGCGCTTTTTGTCTTCTCCCTGTCGTCCTCTCGTTTTTCTC
CCACAACTGGCAGTGCCAGCGTCCTTGACGTACATACGTATGCGCATTTA
CACCATGCCGTCCTCCAAGCCCTTCTCCAAGCACTCCTCCAATGCCTGGA
TGACACCAATGCGCATCCTATTGCTGAGTAATGCCCTCGAGATGCTGGCT
GTCGCGCTCGTGCTCCCTGCCTATCCTGCTATCACAAAATCCCTCGGCAT
CTCACTACAGACACGCGGGCTCATGGTCTCCCTCTTCTCCCTCCTGCAAT
TCATCTCGAGCCCCGTGCTAGGCAGAGGTAGTGATGTCCTAGGTCGAAGC
TATATGCTGCGCATTTCGGCAGTGGCCTCCGTCTTTTGCTACGCATTGAT
GCTTTTTTCAACAGACCAACGAATGTTCCTTATCGCACGCGTCTTGCCAG
GCTTCTTCAAATGCGGAATCTCCGTGTCCCAAGCCTACATTTCGGACATA
AGCACCCAAAAAGACCGCGCCAAGAATCTCGGCGTGATGGGCAGCATGTT
TGGTTTGGCATTTATTGTAGGGCCGGCCTTAGGTGGGATTATGATGGGAA
GGGACCCCTGGCTTACTGTTTGGGTGGCGCTATTTGCGACGATCCTGAAT
CTTCTCATCTTGCTCTCCTTGCCGGAGCCGCCACCACCGGCTATCCTGGC
CGACGAGAAGCACAAGAAGGATGACGGCGAAAATGTGGTAACACAAAATG
GGACAAGTGAGATCGCGCAAAAACGTGAGAAGGCAACTACCGACGACAAA
GTCAATGGCAACAAAAGTGACGATCAAGGGGTGTGGTACCTCGTTCGGCA
CAGTCCAAAAGGCGGGCAAGTTGTCGTCTTATTGGGTCGGAAGGTGTTTG
TCGCCATGTCAAGCGGGATCTTTGAGACGAGTTTTGCAAACTACGCGTCT
AAGCACTTGGGACTGGATGGACAGACGTTGGGCTTGATCCTCAGCTTTCT
AGGCGTCATTTCCGTTTTGAACAATGTGGTGATCGTCAGATGGCTTTCGA
ACCGCTTCCAAGATCATCAGCTCATATTTCCTGCAATTGTAGGGCAAGCT
TTGTCTATGTTAGGGTGGGCGTACGTCTATAACATTGTAACCTTGCTGCC
AGTGTTGGCGGGTTTGACAGTATCGGGATCCATCTTCCAAACGTTGCTCT
CGACTGAGCTTTCTGAGGTCACGCCGCACGCACTCGTTGGCACTGTCTTG
GGCGTCTCATATGCCATTGAGACGTTTGCCAAGATATTGACACCTTTCCT
CGGCGGTTATCTTCTCGAGCAATATGGCGGTCACGCCCTCGGATTTGCCG
CCACCTGCTTTTTGCTCCCGGTGTGTGCGAATGTTGCGCTTGCAGATTTC
AGAAGAGGAGTCGCCAAAGAAGAAGACAAAAAGATAAAATAACAGGTCAT
ACGTTTGGTCGATCCATGGACTTGTAATAAAAAAGTAGAACAAAAAATGA
CTTTGATCTCGCGCGAAACAAA

protein sequence of jgi.p|Nanoce1779_2|587264

>mRNA_4629-protein ID=mRNA_4629-protein|Name=jgi.p|Nanoce1779_2|587264|organism=Nannochloropsis oceanica|type=polypeptide|length=451bp
MRIYTMPSSKPFSKHSSNAWMTPMRILLLSNALEMLAVALVLPAYPAITK
SLGISLQTRGLMVSLFSLLQFISSPVLGRGSDVLGRSYMLRISAVASVFC
YALMLFSTDQRMFLIARVLPGFFKCGISVSQAYISDISTQKDRAKNLGVM
GSMFGLAFIVGPALGGIMMGRDPWLTVWVALFATILNLLILLSLPEPPPP
AILADEKHKKDDGENVVTQNGTSEIAQKREKATTDDKVNGNKSDDQGVWY
LVRHSPKGGQVVVLLGRKVFVAMSSGIFETSFANYASKHLGLDGQTLGLI
LSFLGVISVLNNVVIVRWLSNRFQDHQLIFPAIVGQALSMLGWAYVYNIV
TLLPVLAGLTVSGSIFQTLLSTELSEVTPHALVGTVLGVSYAIETFAKIL
TPFLGGYLLEQYGGHALGFAATCFLLPVCANVALADFRRGVAKEEDKKIK
*

mRNA from alignment at scaffold_9:249080..250725+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4629 ID=mRNA_4629|Name=jgi.p|Nanoce1779_2|587264|organism=Nannochloropsis oceanica|type=mRNA|length=1646bp|location=Sequence derived from alignment at scaffold_9:249080..250725+ (Nannochloropsis oceanica)
AGCACAGGCAGCGCTTTTTGTCTTCTCCCTGTCGTCCTCTCGTTTTTCTC
CCACAACTGGCAGTGCCAGCGTCCTTGACGTACATACGTATGCGCATTTA
CACCATGCCGTCCTCCAAGCCCTTCTCCAAGCACTCCTCCAATGCCTGGA
TGACACCAATGCGCATCCTATTGCTGAGTAATGCCCTCGAGATGCTGGCT
GTCGCGCTCGTGCTCCCTGCCTATCCTGCTATCACAAAATCCCTCGGCAT
CTCACTACAGACACGCGGGCTCATGGTCTCCCTCTTCTCCCTCCTGCAAT
TCATCTCGAGCCCCGTGCTAGGCAGAGGTAGTGATGTCCTAGGTCGAAGC
TATATGCTGCGCATTTCGGCAGTGGCCTCCGTCTTTTGCTACGCATTGAT
GCTTTTTTCAACAGACCAACGAATGTTCCTTATCGCACGCGTCTTGCCAG
GCTTCTTCAAATGCGGAATCTCCGTGTCCCAAGCCTACATTTCGGTAAGT
ACACAATTTTTCATTTAAACTTCACCTGGAAATTGTTTATTTAAAATCGC
CAGCTCTAGTCTGGTATTTATCGCATGCCTCTACGTACTGCATCTCGCTA
CCCCTCCTTCCGACAAAGGACATAAGCACCCAAAAAGACCGCGCCAAGAA
TCTCGGCGTGATGGGCAGCATGTTTGGTTTGGCATTTATTGTAGGGCCGG
CCTTAGGTGGGATTATGATGGGAAGGGACCCCTGGCTTACTGTTTGGGTG
GCGCTATTTGCGACGATCCTGAATCTTCTCATCTTGCTCTCCTTGCCGGA
GCCGCCACCACCGGCTATCCTGGCCGACGAGAAGCACAAGAAGGATGACG
GCGAAAATGTGGTAACACAAAATGGGACAAGTGAGATCGCGCAAAAACGT
GAGAAGGCAACTACCGACGACAAAGTCAATGGCAACAAAAGTGACGATCA
AGGGGTGTGGTACCTCGTTCGGCACAGTCCAAAAGGCGGGCAAGTTGTCG
TCTTATTGGGTCGGAAGGTGTTTGTCGCCATGTCAAGCGGGATCTTTGAG
ACGAGTTTTGCAAACTACGCGTCTAAGCACTTGGGACTGGATGGACAGAC
GTTGGGCTTGATCCTCAGCTTTCTAGGCGTCATTTCCGTTTTGAACAATG
TGGTGATCGTCAGATGGCTTTCGAACCGCTTCCAAGATCATCAGCTCATA
TTTCCTGCAATTGTAGGGCAAGCTTTGTCTATGTTAGGGTGGGCGTACGT
CTATAACATTGTAACCTTGCTGCCAGTGTTGGCGGGTTTGACAGTATCGG
GATCCATCTTCCAAACGTTGCTCTCGACTGAGCTTTCTGAGGTCACGCCG
CACGCACTCGTTGGCACTGTCTTGGGCGTCTCATATGCCATTGAGACGTT
TGCCAAGATATTGACACCTTTCCTCGGCGGTTATCTTCTCGAGCAATATG
GCGGTCACGCCCTCGGATTTGCCGCCACCTGCTTTTTGCTCCCGGTGTGT
GCGAATGTTGCGCTTGCAGATTTCAGAAGAGGAGTCGCCAAAGAAGAAGA
CAAAAAGATAAAATAACAGGTCATACGTTTGGTCGATCCATGGACTTGTA
ATAAAAAAGTAGAACAAAAAATGACTTTGATCTCGCGCGAAACAAA

Coding sequence (CDS) from alignment at scaffold_9:249080..250725+

>mRNA_4629 ID=mRNA_4629|Name=jgi.p|Nanoce1779_2|587264|organism=Nannochloropsis oceanica|type=CDS|length=2706bp|location=Sequence derived from alignment at scaffold_9:249080..250725+ (Nannochloropsis oceanica)
ATGCGCATTTACACCATGCCGTCCTCCAAGCCCTTCTCCAAGCACTCCTC
CAATGCCTGGATGACACCAATGCGCATCCTATTGCTGAGTAATGCCCTCG
AGATGCTGGCTGTCGCGCTCGTGCTCCCTGCCTATCCTGCTATCACAAAA
TCCCTCGGCATCTCACTACAGACACGCGGGCTCATGGTCTCCCTCTTCTC
CCTCCTGCAATTCATCTCGAGCCCCGTGCTAGGCAGAGGTAGTGATGTCC
TAGGTCGAAGCTATATGCTGCGCATTTCGGCAGTGGCCTCCGTCTTTTGC
TACGCATTGATGCTTTTTTCAACAGACCAACGAATGTTCCTTATCGCACG
CGTCTTGCCAGGCTTCTTCAAATGCGGAATCTCCGTGTCCCAAGCCTACA
TTTCGGACATAAGCACCCAAAAAGACCGCGCCAAGAATCTCGGCGTGATG
GGCAGCATGTTTGGTTTGGCATTTATTGTAGGGCCGGCCTTAGGTGGGAT
TATGATGGGAAGGGACCCCTGGCTTACTGTTTGGGTGGCGCTATTTGCGA
CGATCCTGAATCTTCTCATCTTGCTCTCCTTGCCGGAGCCGCCACCACCG
GCTATCCTGGCCGACGAGAAGCACAAGAAGGATGACGGCGAAAATGTGGT
AACACAAAATGGGACAAGTGAGATCGCGCAAAAACGTGAGAAGGCAACTA
CCGACGACAAAGTCAATGGCAACAAAAGTGACGATCAAGGGGTGTGGTAC
CTCGTTCGGCACAGTCCAAAAGGCGGGCAAGTTGTCGTCTTATTGGGTCG
GAAGGTGTTTGTCGCCATGTCAAGCGGGATCTTTGAGACGAGTTTTGCAA
ACTACGCGTCTAAGCACTTGGGACTGGATGGACAGACGTTGGGCTTGATC
CTCAGCTTTCTAGGCGTCATTTCCGTTTTGAACAATGTGGTGATCGTCAG
ATGGCTTTCGAACCGCTTCCAAGATCATCAGCTCATATTTCCTGCAATTG
TAGGGCAAGCTTTGTCTATGTTAGGGTGGGCGTACGTCTATAACATTGTA
ACCTTGCTGCCAGTGTTGGCGGGTTTGACAGTATCGGGATCCATCTTCCA
AACGTTGCTCTCGACTGAGCTTTCTGAGGTCACGCCGCACGCACTCGTTG
GCACTGTCTTGGGCGTCTCATATGCCATTGAGACGTTTGCCAAGATATTG
ACACCTTTCCTCGGCGGTTATCTTCTCGAGCAATATGGCGGTCACGCCCT
CGGATTTGCCGCCACCTGCTTTTTGCTCCCGGTGTGTGCGAATGTTGCGC
TTGCAGATTTCAGAAGAGGAGTCGCCAAAGAAGAAGACAAAAAGATAAAA
TAAATGCGCATTTACACCATGCCGTCCTCCAAGCCCTTCTCCAAGCACTC
CTCCAATGCCTGGATGACACCAATGCGCATCCTATTGCTGAGTAATGCCC
TCGAGATGCTGGCTGTCGCGCTCGTGCTCCCTGCCTATCCTGCTATCACA
AAATCCCTCGGCATCTCACTACAGACACGCGGGCTCATGGTCTCCCTCTT
CTCCCTCCTGCAATTCATCTCGAGCCCCGTGCTAGGCAGAGGTAGTGATG
TCCTAGGTCGAAGCTATATGCTGCGCATTTCGGCAGTGGCCTCCGTCTTT
TGCTACGCATTGATGCTTTTTTCAACAGACCAACGAATGTTCCTTATCGC
ACGCGTCTTGCCAGGCTTCTTCAAATGCGGAATCTCCGTGTCCCAAGCCT
ACATTTCGGACATAAGCACCCAAAAAGACCGCGCCAAGAATCTCGGCGTG
ATGGGCAGCATGTTTGGTTTGGCATTTATTGTAGGGCCGGCCTTAGGTGG
GATTATGATGGGAAGGGACCCCTGGCTTACTGTTTGGGTGGCGCTATTTG
CGACGATCCTGAATCTTCTCATCTTGCTCTCCTTGCCGGAGCCGCCACCA
CCGGCTATCCTGGCCGACGAGAAGCACAAGAAGGATGACGGCGAAAATGT
GGTAACACAAAATGGGACAAGTGAGATCGCGCAAAAACGTGAGAAGGCAA
CTACCGACGACAAAGTCAATGGCAACAAAAGTGACGATCAAGGGGTGTGG
TACCTCGTTCGGCACAGTCCAAAAGGCGGGCAAGTTGTCGTCTTATTGGG
TCGGAAGGTGTTTGTCGCCATGTCAAGCGGGATCTTTGAGACGAGTTTTG
CAAACTACGCGTCTAAGCACTTGGGACTGGATGGACAGACGTTGGGCTTG
ATCCTCAGCTTTCTAGGCGTCATTTCCGTTTTGAACAATGTGGTGATCGT
CAGATGGCTTTCGAACCGCTTCCAAGATCATCAGCTCATATTTCCTGCAA
TTGTAGGGCAAGCTTTGTCTATGTTAGGGTGGGCGTACGTCTATAACATT
GTAACCTTGCTGCCAGTGTTGGCGGGTTTGACAGTATCGGGATCCATCTT
CCAAACGTTGCTCTCGACTGAGCTTTCTGAGGTCACGCCGCACGCACTCG
TTGGCACTGTCTTGGGCGTCTCATATGCCATTGAGACGTTTGCCAAGATA
TTGACACCTTTCCTCGGCGGTTATCTTCTCGAGCAATATGGCGGTCACGC
CCTCGGATTTGCCGCCACCTGCTTTTTGCTCCCGGTGTGTGCGAATGTTG
CGCTTGCAGATTTCAGAAGAGGAGTCGCCAAAGAAGAAGACAAAAAGATA
AAATAA

Synonyms

Publications