jgi.p|Nanoce1779_2|554507, mRNA_4628 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|554507
Unique NamemRNA_4628
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1727
Alignment locationscaffold_9:247143..248914 -

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Properties
Property NameValue
TranscriptId554593
TrackFilteredModels2
ProteinId554507
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:247143..248914 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|554507gene_4628Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|554507mRNA_4628-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4628CDS_4628Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4628 ID=mRNA_4628|Name=jgi.p|Nanoce1779_2|554507|organism=Nannochloropsis oceanica|type=mRNA|length=1727bp
TAACCAAGCACAAGAAACAACGGAGATACCCAACAGCGCACAAGATTTCC
GGCGTCATTATCTAAACGTTGACGTGCCAAGGGAAAGCTAGCCAAGAGCA
AAAAGCTGCCGTCACGTCAAAGCCAACTTGACGCAAAATTCTTCAACTCA
CTCTCGACCCACGTGAATCCCTCCAACAACAAAACCACAAAGACGCAGGA
TGCCACCACGCACACGATCACAGACTAGAGGGAGCAGCGATATCACTGGC
ACCTCCGCCAAAAGCAGAGCAAAGGGCATCAACGGGGAGGAAGAAGGCGT
GGAAGAGGAAGGCCTTGGACTCTGTCCCTTGGTGACACCCTTTTATGTCC
TTCTAGCAATCGCGGTAGCCGTAGGCTCGGGCATCACCCACAAAATCCTA
CAGGGCCCTTTTCATCCTGTAACATGGCAAAATCCGCCTGAGCTGGTGGT
ATTGTATGTAAATCATGACTTGGAAGGGGCAGAGCACCTCTTTCTCAATC
AGGTGGTGGGACCCGAGAGTATCGCTATGGGCAGCAACGACGAGCTTTAC
TTGAGCTTGAATGACGGCCGGGTAGTGCGCACGGACAGTTTGTACAGGCA
TAAGACCACTGTTTTTTTCACTGGTGGGGTCATCAAGGCTGAGCGAGGGG
GAAAGGGGAAAGAAGGAGGGACTTTGCCAAATGGGGAAAGCGAGAAGGAG
CTCATGGCCTGGTGCAGCGCCGAGATGGACGCCATGCGTTTTTCTGAATC
CACCGAAGGCAAATGCGGCCGTCCCCTGGGGTTGCGCTTTATTAATGAGT
CCAATATTCTATACATCGCCGATGCCTACCACGGCATCTTCACCCTCGAC
GCCGCCACCCTCCACGTCCAGCACCTTGTCGCGCCCTCCGCGCCTTCCTT
CCTCCCTCCCTCCTCCATCCCTCTGCACCCAGGGGTTCAGCTGCCCCTCC
GTTTCTCTAACGACTTGGACATTGTCCCTGGCACGGGCGGAGACTTCTTT
TTCTCGGATTCGACCTGGGGCTGGTCCCGAGCGGAACATGCTGTCGATAT
CCTGGACGGAGCGCCTCGTGGGCGATTGTTTCGGTACGTCGCATTAACGA
GAGAAATAGAACCTGTGATCTGCGGACTGCATTTTGCGAATGGTGTACAG
TGTTTGGGGGAGGTGAAGGAGGTGGGGGAGAAGGGCTGGTTGCCTCATTT
CGTGCTGGTAGTGGAGAGCACCCGTTTCAGGATCTTGAAGGTTGATATGT
GGGCGTGGGCGGAGGAGGCGGGGAAGGAAGGCAGGGAGGATGCATTAAGG
AATTACTGTGATGAGGGTTGTGGGTTTCCACCGTTTGTCAGTGTCTTTGC
GGAGGGCTTGCCAGGTTTGCCTGACAACATCAGGTTACACCGCCAGGAGA
ACGTGTTGCTCTTGGGGATGGGCGCCAAGAACGCCCGGCCCTTTGCCCTC
CTTCAGTTCCTTTACCAGCGACCGTGGCTCCGACTGGTCCTCGGAGCGCT
AGTCCCGTTGAAGTACTTCCATACCTTCATGCCCAAGTACGGTCTCGGGG
GGATCCTCTCACTCGAGGGCTCAGTGTTACGCGTATTGCAGGACCCCTCG
GGACGAACCCCCTTCGTGTCTGAGTTACACATTCATCCACGCACGGGTGA
TTTGTTGTTGGGCTCGTTCAGGAATCGGTTTTTGAGCAAGGTGACCTTGT
CGGCGTTGGAGCATTGAGGGAGGGCGG
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protein sequence of jgi.p|Nanoce1779_2|554507

>mRNA_4628-protein ID=mRNA_4628-protein|Name=jgi.p|Nanoce1779_2|554507|organism=Nannochloropsis oceanica|type=polypeptide|length=506bp
MPPRTRSQTRGSSDITGTSAKSRAKGINGEEEGVEEEGLGLCPLVTPFYV
LLAIAVAVGSGITHKILQGPFHPVTWQNPPELVVLYVNHDLEGAEHLFLN
QVVGPESIAMGSNDELYLSLNDGRVVRTDSLYRHKTTVFFTGGVIKAERG
GKGKEGGTLPNGESEKELMAWCSAEMDAMRFSESTEGKCGRPLGLRFINE
SNILYIADAYHGIFTLDAATLHVQHLVAPSAPSFLPPSSIPLHPGVQLPL
RFSNDLDIVPGTGGDFFFSDSTWGWSRAEHAVDILDGAPRGRLFRYVALT
REIEPVICGLHFANGVQCLGEVKEVGEKGWLPHFVLVVESTRFRILKVDM
WAWAEEAGKEGREDALRNYCDEGCGFPPFVSVFAEGLPGLPDNIRLHRQE
NVLLLGMGAKNARPFALLQFLYQRPWLRLVLGALVPLKYFHTFMPKYGLG
GILSLEGSVLRVLQDPSGRTPFVSELHIHPRTGDLLLGSFRNRFLSKVTL
SALEH*
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mRNA from alignment at scaffold_9:247143..248914-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4628 ID=mRNA_4628|Name=jgi.p|Nanoce1779_2|554507|organism=Nannochloropsis oceanica|type=mRNA|length=1772bp|location=Sequence derived from alignment at scaffold_9:247143..248914- (Nannochloropsis oceanica)
TAACCAAGCACAAGAAACAACGGAGATACCCAACAGCGCACAAGATTTCC
GGCGTCATTATCTAAACGTTGACGTGCCAAGGGAAAGCTAGCCAAGAGCA
AAAAGCTGCCGTCACGTCAAAGCCAACTTGACGCAAAATTCTTCAACTCA
CTCTCGACCCACGTGAATCCCTCCAACAACAAAACCACAAAGACGCAGGA
TGCCACCACGCACACGATCACAGACTAGAGGGAGCAGCGATATCACTGGC
ACCTCCGCCAAAAGCAGAGCAAAGGGCATCAACGGGGAGGAAGAAGGCGT
GGAAGAGGAAGGCCTTGGACTCTGTCCCTTGGTGACACCCTTTTATGTCC
TTCTAGCAATCGCGGTAGCCGTAGGCTCGGGCATCACCCACAAAATCCTA
CAGGGCCCTTTTCATCCTGTAACATGGCAAAATCCGCCTGAGCTGGTGGT
ATTGTATGTAAATCATGACTTGGAAGGGGCAGAGCACCTCTTTCTCAATC
AGGTGGTGGGACCCGAGAGTATCGCTATGGGCAGCAACGACGAGCTTTAC
TTGAGCTTGAATGACGGCCGGGTAGTGCGCACGGACAGTTTGTACAGGCA
TAAGACCACTGTTTTTTTCACTGGTGGGGTCATCAAGGCTGAGCGAGGGG
GAAAGGGGAAAGAAGGAGGGACTTTGCCAAATGGGGAAAGCGAGAAGGAG
CTCATGGCCTGGTGCAGCGCCGAGATGGACGCCATGCGTTTTTCTGAATC
CACCGAAGGCAAATGCGGCCGTCCCCTGGGGTTGCGCTTTATTAATGAGT
CCAATATTCTATACATCGCCGATGCCTACCACGGCATCTTCACCCTCGAC
GCCGCCACCCTCCACGTCCAGCACCTTGTCGCGCCCTCCGCGCCTTCCTT
CCTCCCTCCCTCCTCCATCCCTCTGCACCCAGGGGTTCAGCTGCCCCTCC
GTTTCTCTAACGACTTGGACATTGTCCCTGGCACGGGCGGAGACTTCTTT
TTCTCGGATTCGACCTGGGGCTGGTCCCGAGCGGAACATGCTGTCGATAT
CCTGGACGGAGCGCCTCGTGGGCGATTGTTTCGGTACGTCGCATTAACGA
GAGAAATAGAACCTGTGATCTGCGGACTGCATTTTGCGAATGGTGTACAG
TGTTTGGGGGAGGTGAAGGAGGTGGGGGAGAAGGGCTGGTTGCCTCATTT
CGTGCTGGTAGTGGAGAGCACCCGTTTCAGGATCTTGAAGGTTGATATGT
GGGCGTGGGCGGAGGAGGCGGGGAAGGAAGGCAGGGAGGATGCATTAAGG
AATTACTGTGATGAGGGTTGTGGGTTTCCACCGTTTGTCAGTGTCTTTGC
GGAGGGCTTGCCAGGTTTGCCTGACAACATCAGGTTACACCGCCAGGTGG
AGGGAGGGAGGGAGGGAGGGCTTGTGGGAATGGGAGTGGAGGAGAACGTG
TTGCTCTTGGGGATGGGCGCCAAGAACGCCCGGCCCTTTGCCCTCCTTCA
GTTCCTTTACCAGCGACCGTGGCTCCGACTGGTCCTCGGAGCGCTAGTCC
CGTTGAAGTACTTCCATACCTTCATGCCCAAGTACGGTCTCGGGGGGATC
CTCTCACTCGAGGGCTCAGTGTTACGCGTATTGCAGGACCCCTCGGGACG
AACCCCCTTCGTGTCTGAGTTACACATTCATCCACGCACGGGTGATTTGT
TGTTGGGCTCGTTCAGGAATCGGTTTTTGAGCAAGGTGACCTTGTCGGCG
TTGGAGCATTGAGGGAGGGCGG
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Coding sequence (CDS) from alignment at scaffold_9:247143..248914-

>mRNA_4628 ID=mRNA_4628|Name=jgi.p|Nanoce1779_2|554507|organism=Nannochloropsis oceanica|type=CDS|length=3036bp|location=Sequence derived from alignment at scaffold_9:247143..248914- (Nannochloropsis oceanica)
GAGAACGTGTTGCTCTTGGGGATGGGCGCCAAGAACGCCCGGCCCTTTGC
CCTCCTTCAGTTCCTTTACCAGCGACCGTGGCTCCGACTGGTCCTCGGAG
CGCTAGTCCCGTTGAAGTACTTCCATACCTTCATGCCCAAGTACGGTCTC
GGGGGGATCCTCTCACTCGAGGGCTCAGTGTTACGCGTATTGCAGGACCC
CTCGGGACGAACCCCCTTCGTGTCTGAGTTACACATTCATCCACGCACGG
GTGATTTGTTGTTGGGCTCGTTCAGGAATCGGTTTTTGAGCAAGGTGACC
TTGTCGGCGTTGGAGCATTGAATGCCACCACGCACACGATCACAGACTAG
AGGGAGCAGCGATATCACTGGCACCTCCGCCAAAAGCAGAGCAAAGGGCA
TCAACGGGGAGGAAGAAGGCGTGGAAGAGGAAGGCCTTGGACTCTGTCCC
TTGGTGACACCCTTTTATGTCCTTCTAGCAATCGCGGTAGCCGTAGGCTC
GGGCATCACCCACAAAATCCTACAGGGCCCTTTTCATCCTGTAACATGGC
AAAATCCGCCTGAGCTGGTGGTATTGTATGTAAATCATGACTTGGAAGGG
GCAGAGCACCTCTTTCTCAATCAGGTGGTGGGACCCGAGAGTATCGCTAT
GGGCAGCAACGACGAGCTTTACTTGAGCTTGAATGACGGCCGGGTAGTGC
GCACGGACAGTTTGTACAGGCATAAGACCACTGTTTTTTTCACTGGTGGG
GTCATCAAGGCTGAGCGAGGGGGAAAGGGGAAAGAAGGAGGGACTTTGCC
AAATGGGGAAAGCGAGAAGGAGCTCATGGCCTGGTGCAGCGCCGAGATGG
ACGCCATGCGTTTTTCTGAATCCACCGAAGGCAAATGCGGCCGTCCCCTG
GGGTTGCGCTTTATTAATGAGTCCAATATTCTATACATCGCCGATGCCTA
CCACGGCATCTTCACCCTCGACGCCGCCACCCTCCACGTCCAGCACCTTG
TCGCGCCCTCCGCGCCTTCCTTCCTCCCTCCCTCCTCCATCCCTCTGCAC
CCAGGGGTTCAGCTGCCCCTCCGTTTCTCTAACGACTTGGACATTGTCCC
TGGCACGGGCGGAGACTTCTTTTTCTCGGATTCGACCTGGGGCTGGTCCC
GAGCGGAACATGCTGTCGATATCCTGGACGGAGCGCCTCGTGGGCGATTG
TTTCGGTACGTCGCATTAACGAGAGAAATAGAACCTGTGATCTGCGGACT
GCATTTTGCGAATGGTGTACAGTGTTTGGGGGAGGTGAAGGAGGTGGGGG
AGAAGGGCTGGTTGCCTCATTTCGTGCTGGTAGTGGAGAGCACCCGTTTC
AGGATCTTGAAGGTTGATATGTGGGCGTGGGCGGAGGAGGCGGGGAAGGA
AGGCAGGGAGGATGCATTAAGGAATTACTGTGATGAGGGTTGTGGGTTTC
CACCGTTTGTCAGTGTCTTTGCGGAGGGCTTGCCAGGTTTGCCTGACAAC
ATCAGGTTACACCGCCAGGAGAACGTGTTGCTCTTGGGGATGGGCGCCAA
GAACGCCCGGCCCTTTGCCCTCCTTCAGTTCCTTTACCAGCGACCGTGGC
TCCGACTGGTCCTCGGAGCGCTAGTCCCGTTGAAGTACTTCCATACCTTC
ATGCCCAAGTACGGTCTCGGGGGGATCCTCTCACTCGAGGGCTCAGTGTT
ACGCGTATTGCAGGACCCCTCGGGACGAACCCCCTTCGTGTCTGAGTTAC
ACATTCATCCACGCACGGGTGATTTGTTGTTGGGCTCGTTCAGGAATCGG
TTTTTGAGCAAGGTGACCTTGTCGGCGTTGGAGCATTGAATGCCACCACG
CACACGATCACAGACTAGAGGGAGCAGCGATATCACTGGCACCTCCGCCA
AAAGCAGAGCAAAGGGCATCAACGGGGAGGAAGAAGGCGTGGAAGAGGAA
GGCCTTGGACTCTGTCCCTTGGTGACACCCTTTTATGTCCTTCTAGCAAT
CGCGGTAGCCGTAGGCTCGGGCATCACCCACAAAATCCTACAGGGCCCTT
TTCATCCTGTAACATGGCAAAATCCGCCTGAGCTGGTGGTATTGTATGTA
AATCATGACTTGGAAGGGGCAGAGCACCTCTTTCTCAATCAGGTGGTGGG
ACCCGAGAGTATCGCTATGGGCAGCAACGACGAGCTTTACTTGAGCTTGA
ATGACGGCCGGGTAGTGCGCACGGACAGTTTGTACAGGCATAAGACCACT
GTTTTTTTCACTGGTGGGGTCATCAAGGCTGAGCGAGGGGGAAAGGGGAA
AGAAGGAGGGACTTTGCCAAATGGGGAAAGCGAGAAGGAGCTCATGGCCT
GGTGCAGCGCCGAGATGGACGCCATGCGTTTTTCTGAATCCACCGAAGGC
AAATGCGGCCGTCCCCTGGGGTTGCGCTTTATTAATGAGTCCAATATTCT
ATACATCGCCGATGCCTACCACGGCATCTTCACCCTCGACGCCGCCACCC
TCCACGTCCAGCACCTTGTCGCGCCCTCCGCGCCTTCCTTCCTCCCTCCC
TCCTCCATCCCTCTGCACCCAGGGGTTCAGCTGCCCCTCCGTTTCTCTAA
CGACTTGGACATTGTCCCTGGCACGGGCGGAGACTTCTTTTTCTCGGATT
CGACCTGGGGCTGGTCCCGAGCGGAACATGCTGTCGATATCCTGGACGGA
GCGCCTCGTGGGCGATTGTTTCGGTACGTCGCATTAACGAGAGAAATAGA
ACCTGTGATCTGCGGACTGCATTTTGCGAATGGTGTACAGTGTTTGGGGG
AGGTGAAGGAGGTGGGGGAGAAGGGCTGGTTGCCTCATTTCGTGCTGGTA
GTGGAGAGCACCCGTTTCAGGATCTTGAAGGTTGATATGTGGGCGTGGGC
GGAGGAGGCGGGGAAGGAAGGCAGGGAGGATGCATTAAGGAATTACTGTG
ATGAGGGTTGTGGGTTTCCACCGTTTGTCAGTGTCTTTGCGGAGGGCTTG
CCAGGTTTGCCTGACAACATCAGGTTACACCGCCAG
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Synonyms
Publications