jgi.p|Nanoce1779_2|587255, mRNA_4627 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|587255
Unique Name	mRNA_4627
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1491
Alignment location	scaffold_9:245409..246899 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	587341
Track	FilteredModels2
ProteinId	587255

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:245409..246899 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587255	gene_4627	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587255	mRNA_4627-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4627	CDS_4627	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:245409..246899+
coding sequence from alignment at scaffold_9:245409..246899+

mRNA sequence

>mRNA_4627 ID=mRNA_4627|Name=jgi.p|Nanoce1779_2|587255|organism=Nannochloropsis oceanica|type=mRNA|length=1491bp
GCGTACTCTTTCAAGGCACGTCGCTCAGATCTCTTTTGACTCCCTTAAAT
AAACAATGACACTCGGATCAAATGTAATTATGCCATCTTGCCTATTGGAA
TTTTTTTCCTGCGGGAATGTATTGCGGCTAAAAAGATGCTTTTATGGTGA
TAAAGGCCTTGTAGGAGGTTTTCTCTGAAAAGGCCGTTGAGAAGAAGCAA
CTGAACTGTGTCAGACCTTTACACGTCCACGATCATGCCATGCACATCTT
CGCGGGGCTGACAAAGGGCATGTTTGTCTATTGGACGAGAACATCTGATT
GTCTCGGCATCAATGTGCATTTCCCTTAGGTCACGCTGCCTTCCCATCCT
CATCTCCGCTCCCTTCTCTCTTTCCCACAGCTTCCGTTATCATAATGGCG
AGCCAAACAAGAAGCGTGCTGCCCCTGCTGTCCATTGCCTTGCTCCTCGC
TGCGGCGATTGCCTGGACTGTGCCATCGCCGCTGCAGCGGCCCCAGGTAA
GGACGGGGAAGGGAAGACTGAGACATTGTCAGGAAAAGTAGGACGACGAC
GTCACGGCAAGGGCAAGTATCTTGGATTTCCTATGCGCTGCGTACCATGC
TAGCCTTCCTCTACCATTCACATCATGGAGGGACTTCGTGCTCTGTGTCT
TTCTCTATAGCCAATTTATCCGGAGCAATGGCTCATTCGAACGTCTCTAG
GGTAGCCTCATGCCACACGCAGACGCCTCCCTCCATGGTCTGTCGTCTCC
TTCGTTGTTTATCAGGCATCACAAAGACATTTTCATCTCTCGGCATACGC
ATTTCCACGCTGCTTACAATATGTTTAAACCTCATCCCTTCCTCTCCTCT
TTTTCGAACCCCCCCCGCATAGTCCTCCTTGGCCCCTCCCACCACCTCTC
GCACGGCCATTCCCTCAAGACTGCCGTCGTCCTTCCCCCTCACCCGTCGC
CTGGCCGCGGACGACAGTAACAACAATGAAAGCAGTAGTAACAAGCTGCC
CATGCTTTTGGACGTGGAAACGAGGGGAGGCATTTTGTTTGTCTCGACCC
TTGGCACGGCCGCAGTGTTTGGTGGGTACAGCGTGGCGACGGCTTTGGGG
GTGGATGGGCAGAAGGCCGGGATCTACATTTCGGTGGCGATGACTCTGGG
AATGGTTGCTTGGACGGCAAGCTATATTTTTCGGGTGGCAAATAAGGATA
TGACGTATGCCAAGCAGTTGAAGAATTATGAGGACGCCGTGTTGGCCAAG
AGGTTGGAGGAGCTGGAGGAGGAGGAGGTGGAGGCCTTGCTGGAGGAGGT
GGAGAAGGAGGGGGCAAACATGAAAATGTAAATACAGTGATAATTCAAAT
TTTCTTCATTTAATTGATGACGGGGCTAAGGGGGATGAAGGTGGAGGTTT
GTGTGTGCATGGAAGGAGGGAGAAGGGAGGACGGGGGAATGAACGAAGTC
AAATTTAACGAATGCTACCCGCCGAGACATAGCGCGCTGAT

protein sequence of jgi.p|Nanoce1779_2|587255

>mRNA_4627-protein ID=mRNA_4627-protein|Name=jgi.p|Nanoce1779_2|587255|organism=Nannochloropsis oceanica|type=polypeptide|length=110bp
MLLDVETRGGILFVSTLGTAAVFGGYSVATALGVDGQKAGIYISVAMTLG
MVAWTASYIFRVANKDMTYAKQLKNYEDAVLAKRLEELEEEEVEALLEEV
EKEGANMKM*

mRNA from alignment at scaffold_9:245409..246899+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4627 ID=mRNA_4627|Name=jgi.p|Nanoce1779_2|587255|organism=Nannochloropsis oceanica|type=mRNA|length=1491bp|location=Sequence derived from alignment at scaffold_9:245409..246899+ (Nannochloropsis oceanica)
GCGTACTCTTTCAAGGCACGTCGCTCAGATCTCTTTTGACTCCCTTAAAT
AAACAATGACACTCGGATCAAATGTAATTATGCCATCTTGCCTATTGGAA
TTTTTTTCCTGCGGGAATGTATTGCGGCTAAAAAGATGCTTTTATGGTGA
TAAAGGCCTTGTAGGAGGTTTTCTCTGAAAAGGCCGTTGAGAAGAAGCAA
CTGAACTGTGTCAGACCTTTACACGTCCACGATCATGCCATGCACATCTT
CGCGGGGCTGACAAAGGGCATGTTTGTCTATTGGACGAGAACATCTGATT
GTCTCGGCATCAATGTGCATTTCCCTTAGGTCACGCTGCCTTCCCATCCT
CATCTCCGCTCCCTTCTCTCTTTCCCACAGCTTCCGTTATCATAATGGCG
AGCCAAACAAGAAGCGTGCTGCCCCTGCTGTCCATTGCCTTGCTCCTCGC
TGCGGCGATTGCCTGGACTGTGCCATCGCCGCTGCAGCGGCCCCAGGTAA
GGACGGGGAAGGGAAGACTGAGACATTGTCAGGAAAAGTAGGACGACGAC
GTCACGGCAAGGGCAAGTATCTTGGATTTCCTATGCGCTGCGTACCATGC
TAGCCTTCCTCTACCATTCACATCATGGAGGGACTTCGTGCTCTGTGTCT
TTCTCTATAGCCAATTTATCCGGAGCAATGGCTCATTCGAACGTCTCTAG
GGTAGCCTCATGCCACACGCAGACGCCTCCCTCCATGGTCTGTCGTCTCC
TTCGTTGTTTATCAGGCATCACAAAGACATTTTCATCTCTCGGCATACGC
ATTTCCACGCTGCTTACAATATGTTTAAACCTCATCCCTTCCTCTCCTCT
TTTTCGAACCCCCCCCGCATAGTCCTCCTTGGCCCCTCCCACCACCTCTC
GCACGGCCATTCCCTCAAGACTGCCGTCGTCCTTCCCCCTCACCCGTCGC
CTGGCCGCGGACGACAGTAACAACAATGAAAGCAGTAGTAACAAGCTGCC
CATGCTTTTGGACGTGGAAACGAGGGGAGGCATTTTGTTTGTCTCGACCC
TTGGCACGGCCGCAGTGTTTGGTGGGTACAGCGTGGCGACGGCTTTGGGG
GTGGATGGGCAGAAGGCCGGGATCTACATTTCGGTGGCGATGACTCTGGG
AATGGTTGCTTGGACGGCAAGCTATATTTTTCGGGTGGCAAATAAGGATA
TGACGTATGCCAAGCAGTTGAAGAATTATGAGGACGCCGTGTTGGCCAAG
AGGTTGGAGGAGCTGGAGGAGGAGGAGGTGGAGGCCTTGCTGGAGGAGGT
GGAGAAGGAGGGGGCAAACATGAAAATGTAAATACAGTGATAATTCAAAT
TTTCTTCATTTAATTGATGACGGGGCTAAGGGGGATGAAGGTGGAGGTTT
GTGTGTGCATGGAAGGAGGGAGAAGGGAGGACGGGGGAATGAACGAAGTC
AAATTTAACGAATGCTACCCGCCGAGACATAGCGCGCTGAT

Coding sequence (CDS) from alignment at scaffold_9:245409..246899+

>mRNA_4627 ID=mRNA_4627|Name=jgi.p|Nanoce1779_2|587255|organism=Nannochloropsis oceanica|type=CDS|length=330bp|location=Sequence derived from alignment at scaffold_9:245409..246899+ (Nannochloropsis oceanica)
ATGCTTTTGGACGTGGAAACGAGGGGAGGCATTTTGTTTGTCTCGACCCT
TGGCACGGCCGCAGTGTTTGGTGGGTACAGCGTGGCGACGGCTTTGGGGG
TGGATGGGCAGAAGGCCGGGATCTACATTTCGGTGGCGATGACTCTGGGA
ATGGTTGCTTGGACGGCAAGCTATATTTTTCGGGTGGCAAATAAGGATAT
GACGTATGCCAAGCAGTTGAAGAATTATGAGGACGCCGTGTTGGCCAAGA
GGTTGGAGGAGCTGGAGGAGGAGGAGGTGGAGGCCTTGCTGGAGGAGGTG
GAGAAGGAGGGGGCAAACATGAAAATGTAA

Synonyms

Publications