jgi.p|Nanoce1779_2|587248, mRNA_4625 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|587248
Unique Name	mRNA_4625
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	971
Alignment location	scaffold_9:238225..239777 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	587334
Track	FilteredModels2
ProteinId	587248

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:238225..239777 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587248	gene_4625	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587248	mRNA_4625-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4625	CDS_4625	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:238225..239777+
coding sequence from alignment at scaffold_9:238225..239777+

mRNA sequence

>mRNA_4625 ID=mRNA_4625|Name=jgi.p|Nanoce1779_2|587248|organism=Nannochloropsis oceanica|type=mRNA|length=971bp
ACAGCAGGATGATGAGGACTTTCTGCCTTCTTGCGGTGGCCATGCTGGCC
GCGCCCGCATCCGCCTTCATCCCTCAGACCTCCTTCCGCTCCAGCAGCCC
CGTCGTCAGCAGATCCGCGAGTCGTCGTACTGCCCCCTCCATGATGGCCG
CACGCCGTCCGTTCATCGCAGGCAACTGGAAGGAGAACCCCGATACCCTC
GAGGCAGCCCTGGACCTGGCCAAGGCGGTCGCAGCTGCCTCAACTAGCGC
CTCCAACGTGGACGTTGCCGTCGTCGTGCCCTTTCCCTTTCTTGTTCCTG
TCAAGGATGCCCTCAAAGGAAGCAACGTTTTCCTCGGCGCGCAAGACTTG
TATACGGAGGATAAAGGTGCCTACACGGGCGCGACCTCTCTTCCGATGAT
CAAGTCAGTGGGGGCGCAGTGGGTGCTGTGTGGCCACTCGGAGCGACGGG
CCTTGTTCGGAGATACCGACGAGACGGTGAATGCCAAGCTGCACAAAGTG
TTGGGCGCGGGGTTAAAGGCTATCCTCTGCATTGGCGAGACCAAGGACGA
GTACGAGCTGGGCGTGAACAAGCTCATCTGCGGCCTGCAACTCGCCAAGG
GCCTTAAGGGCGTCACCAAGGAACAAATGGACAACGTGGCCATTGCCTAC
GAGCCGGTATGGGCCATCGGCACGGGCCTAACCGCCACCCCCGAGATCGC
CCAAGACGTGCATGCGAACATCCGGAAGATCCTGTCCGAGGCCTACGGGA
AGGACGTGAGCGACAAGGTGGTGATCCAGTACGGAGGGAGCGTGACGCCC
GAGACGGTGGACGAGTTGATGGCCATGCCCGACATCGACGGCGCCTTGGT
GGGCGGCGCGTCCTTGGTAGGAGAGAAATTTGCGCGAATAATCAACCACA
AGTGAATGATATAAGGAGTAGAGACGGTGCGGGTGCATGTCTGCAGTCGG
ACTCGGGGCGGGAAGAGAGTC

protein sequence of jgi.p|Nanoce1779_2|587248

>mRNA_4625-protein ID=mRNA_4625-protein|Name=jgi.p|Nanoce1779_2|587248|organism=Nannochloropsis oceanica|type=polypeptide|length=299bp
MMRTFCLLAVAMLAAPASAFIPQTSFRSSSPVVSRSASRRTAPSMMAARR
PFIAGNWKENPDTLEAALDLAKAVAAASTSASNVDVAVVVPFPFLVPVKD
ALKGSNVFLGAQDLYTEDKGAYTGATSLPMIKSVGAQWVLCGHSERRALF
GDTDETVNAKLHKVLGAGLKAILCIGETKDEYELGVNKLICGLQLAKGLK
GVTKEQMDNVAIAYEPVWAIGTGLTATPEIAQDVHANIRKILSEAYGKDV
SDKVVIQYGGSVTPETVDELMAMPDIDGALVGGASLVGEKFARIINHK*

mRNA from alignment at scaffold_9:238225..239777+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4625 ID=mRNA_4625|Name=jgi.p|Nanoce1779_2|587248|organism=Nannochloropsis oceanica|type=mRNA|length=1553bp|location=Sequence derived from alignment at scaffold_9:238225..239777+ (Nannochloropsis oceanica)
ACAGCAGGATGATGAGGACTTTCTGCCTTCTTGCGGTGGCCATGCTGGCC
GCGCCCGCATCCGCCTTCATCCCTCAGACCTCCTTCCGCTCCAGCAGCCC
CGTCGTCAGCAGATCCGCGAGTCGTCGTACTGCCCCCTCCATGATGGCCG
CACGCCGTCCGTTCATCGCAGGCAACTGGAAGGAGAACCCCGATACCCTC
GAGGCAGCCCTGGACCTGGCCAAGGCGGTACGTTCGACCGTCAATGAGAC
AGGCAGAGTGAGGTTTTCGTGTGTTGAGTGTGCGGATGAGAGTCTGGCTG
ATGTGTCGGCTGGTTGTACACTTTCCTCAGCTCATGTTCACGAGCCGGAG
TCCAGCGCATTGCCTCCCTTCATCACTGGTTAACTCTCTGCCCCCACGTT
GAACTGTTCTCGTGTCCCTACAATACCATTATCATCAATATTTCATCCCG
GCCGCTAATCCCTCCCTCCCTCCCCCCCTCCCTCCCTTCCTCTTCCCTTG
CTCCCTCCGTCTCCTTCCCCTCAGGTCGCAGCTGCCTCAACTAGCGCCTC
CAACGTGGACGTTGCCGTCGTCGTGCCCTTTCCCTTTCTTGTTCCTGTCA
AGGATGCCCTCAAAGGAAGCAACGTTTTCCTCGGCGCGCAAGACTTGTAT
ACGGAGGATAAAGGTGCCTACACGGGCGCGACCTCTCTTCCGATGATCAA
GTCAGTGGGGGCGCAGTGGGTGCTGTGTGGCCACTCGGAGCGACGGGCCT
TGTTCGGAGATACCGACGAGACGGTGAATGCCAAGCTGCACAAAGTGTTG
GGCGCGGGGTTAAAGGTACGAGGGAGGGAGGGAGGGAGGGGAGGGCCACG
GGAAGGATTGAGGGGGGGAGACATTCGCACAGGGCAGAGAAACTTAATAT
AGGCTGGTCCAGCATCCACTCAGCTTTCCTTCCTTCTTCATTTTTCATAT
TTCCTCTCTCCCTCTCCTCCCCCTGACCCGCGCAGGCTATCCTCTGCATT
GGCGAGACCAAGGACGAGTACGAGCTGGGCGTGAACAAGCTCATCTGCGG
CCTGCAACTCGCCAAGGGCCTTAAGGGCGTCACCAAGGTTCGGCTCGCCC
TCCCACCCCCCCTTTCCTCCCTCCCACAAAGAGGAAATCCTGTGCTCCAT
TTGATAAGAACCGACCCTCCCTCCCTCCCTCCTGCATTCCCTTTCCCAAC
AGGAACAAATGGACAACGTGGCCATTGCCTACGAGCCGGTATGGGCCATC
GGCACGGGCCTAACCGCCACCCCCGAGATCGCCCAAGACGTGCATGCGAA
CATCCGGAAGATCCTGTCCGAGGCCTACGGGAAGGACGTGAGCGACAAGG
TGGTGATCCAGTACGGAGGGAGCGTGACGCCCGAGACGGTGGACGAGTTG
ATGGCCATGCCCGACATCGACGGCGCCTTGGTGGGCGGCGCGTCCTTGGT
AGGAGAGAAATTTGCGCGAATAATCAACCACAAGTGAATGATATAAGGAG
TAGAGACGGTGCGGGTGCATGTCTGCAGTCGGACTCGGGGCGGGAAGAGA
GTC

Coding sequence (CDS) from alignment at scaffold_9:238225..239777+

>mRNA_4625 ID=mRNA_4625|Name=jgi.p|Nanoce1779_2|587248|organism=Nannochloropsis oceanica|type=CDS|length=3588bp|location=Sequence derived from alignment at scaffold_9:238225..239777+ (Nannochloropsis oceanica)
ATGATGAGGACTTTCTGCCTTCTTGCGGTGGCCATGCTGGCCGCGCCCGC
ATCCGCCTTCATCCCTCAGACCTCCTTCCGCTCCAGCAGCCCCGTCGTCA
GCAGATCCGCGAGTCGTCGTACTGCCCCCTCCATGATGGCCGCACGCCGT
CCGTTCATCGCAGGCAACTGGAAGGAGAACCCCGATACCCTCGAGGCAGC
CCTGGACCTGGCCAAGGCGGTCGCAGCTGCCTCAACTAGCGCCTCCAACG
TGGACGTTGCCGTCGTCGTGCCCTTTCCCTTTCTTGTTCCTGTCAAGGAT
GCCCTCAAAGGAAGCAACGTTTTCCTCGGCGCGCAAGACTTGTATACGGA
GGATAAAGGTGCCTACACGGGCGCGACCTCTCTTCCGATGATCAAGTCAG
TGGGGGCGCAGTGGGTGCTGTGTGGCCACTCGGAGCGACGGGCCTTGTTC
GGAGATACCGACGAGACGGTGAATGCCAAGCTGCACAAAGTGTTGGGCGC
GGGGTTAAAGGCTATCCTCTGCATTGGCGAGACCAAGGACGAGTACGAGC
TGGGCGTGAACAAGCTCATCTGCGGCCTGCAACTCGCCAAGGGCCTTAAG
GGCGTCACCAAGGAACAAATGGACAACGTGGCCATTGCCTACGAGCCGGT
ATGGGCCATCGGCACGGGCCTAACCGCCACCCCCGAGATCGCCCAAGACG
TGCATGCGAACATCCGGAAGATCCTGTCCGAGGCCTACGGGAAGGACGTG
AGCGACAAGGTGGTGATCCAGTACGGAGGGAGCGTGACGCCCGAGACGGT
GGACGAGTTGATGGCCATGCCCGACATCGACGGCGCCTTGGTGGGCGGCG
CGTCCTTGGTAGGAGAGAAATTTGCGCGAATAATCAACCACAAGTGAATG
ATGAGGACTTTCTGCCTTCTTGCGGTGGCCATGCTGGCCGCGCCCGCATC
CGCCTTCATCCCTCAGACCTCCTTCCGCTCCAGCAGCCCCGTCGTCAGCA
GATCCGCGAGTCGTCGTACTGCCCCCTCCATGATGGCCGCACGCCGTCCG
TTCATCGCAGGCAACTGGAAGGAGAACCCCGATACCCTCGAGGCAGCCCT
GGACCTGGCCAAGGCGGTCGCAGCTGCCTCAACTAGCGCCTCCAACGTGG
ACGTTGCCGTCGTCGTGCCCTTTCCCTTTCTTGTTCCTGTCAAGGATGCC
CTCAAAGGAAGCAACGTTTTCCTCGGCGCGCAAGACTTGTATACGGAGGA
TAAAGGTGCCTACACGGGCGCGACCTCTCTTCCGATGATCAAGTCAGTGG
GGGCGCAGTGGGTGCTGTGTGGCCACTCGGAGCGACGGGCCTTGTTCGGA
GATACCGACGAGACGGTGAATGCCAAGCTGCACAAAGTGTTGGGCGCGGG
GTTAAAGGCTATCCTCTGCATTGGCGAGACCAAGGACGAGTACGAGCTGG
GCGTGAACAAGCTCATCTGCGGCCTGCAACTCGCCAAGGGCCTTAAGGGC
GTCACCAAGGAACAAATGGACAACGTGGCCATTGCCTACGAGCCGGTATG
GGCCATCGGCACGGGCCTAACCGCCACCCCCGAGATCGCCCAAGACGTGC
ATGCGAACATCCGGAAGATCCTGTCCGAGGCCTACGGGAAGGACGTGAGC
GACAAGGTGGTGATCCAGTACGGAGGGAGCGTGACGCCCGAGACGGTGGA
CGAGTTGATGGCCATGCCCGACATCGACGGCGCCTTGGTGGGCGGCGCGT
CCTTGGTAGGAGAGAAATTTGCGCGAATAATCAACCACAAGTGAATGATG
AGGACTTTCTGCCTTCTTGCGGTGGCCATGCTGGCCGCGCCCGCATCCGC
CTTCATCCCTCAGACCTCCTTCCGCTCCAGCAGCCCCGTCGTCAGCAGAT
CCGCGAGTCGTCGTACTGCCCCCTCCATGATGGCCGCACGCCGTCCGTTC
ATCGCAGGCAACTGGAAGGAGAACCCCGATACCCTCGAGGCAGCCCTGGA
CCTGGCCAAGGCGGTCGCAGCTGCCTCAACTAGCGCCTCCAACGTGGACG
TTGCCGTCGTCGTGCCCTTTCCCTTTCTTGTTCCTGTCAAGGATGCCCTC
AAAGGAAGCAACGTTTTCCTCGGCGCGCAAGACTTGTATACGGAGGATAA
AGGTGCCTACACGGGCGCGACCTCTCTTCCGATGATCAAGTCAGTGGGGG
CGCAGTGGGTGCTGTGTGGCCACTCGGAGCGACGGGCCTTGTTCGGAGAT
ACCGACGAGACGGTGAATGCCAAGCTGCACAAAGTGTTGGGCGCGGGGTT
AAAGGCTATCCTCTGCATTGGCGAGACCAAGGACGAGTACGAGCTGGGCG
TGAACAAGCTCATCTGCGGCCTGCAACTCGCCAAGGGCCTTAAGGGCGTC
ACCAAGGAACAAATGGACAACGTGGCCATTGCCTACGAGCCGGTATGGGC
CATCGGCACGGGCCTAACCGCCACCCCCGAGATCGCCCAAGACGTGCATG
CGAACATCCGGAAGATCCTGTCCGAGGCCTACGGGAAGGACGTGAGCGAC
AAGGTGGTGATCCAGTACGGAGGGAGCGTGACGCCCGAGACGGTGGACGA
GTTGATGGCCATGCCCGACATCGACGGCGCCTTGGTGGGCGGCGCGTCCT
TGGTAGGAGAGAAATTTGCGCGAATAATCAACCACAAGTGAATGATGAGG
ACTTTCTGCCTTCTTGCGGTGGCCATGCTGGCCGCGCCCGCATCCGCCTT
CATCCCTCAGACCTCCTTCCGCTCCAGCAGCCCCGTCGTCAGCAGATCCG
CGAGTCGTCGTACTGCCCCCTCCATGATGGCCGCACGCCGTCCGTTCATC
GCAGGCAACTGGAAGGAGAACCCCGATACCCTCGAGGCAGCCCTGGACCT
GGCCAAGGCGGTCGCAGCTGCCTCAACTAGCGCCTCCAACGTGGACGTTG
CCGTCGTCGTGCCCTTTCCCTTTCTTGTTCCTGTCAAGGATGCCCTCAAA
GGAAGCAACGTTTTCCTCGGCGCGCAAGACTTGTATACGGAGGATAAAGG
TGCCTACACGGGCGCGACCTCTCTTCCGATGATCAAGTCAGTGGGGGCGC
AGTGGGTGCTGTGTGGCCACTCGGAGCGACGGGCCTTGTTCGGAGATACC
GACGAGACGGTGAATGCCAAGCTGCACAAAGTGTTGGGCGCGGGGTTAAA
GGCTATCCTCTGCATTGGCGAGACCAAGGACGAGTACGAGCTGGGCGTGA
ACAAGCTCATCTGCGGCCTGCAACTCGCCAAGGGCCTTAAGGGCGTCACC
AAGGAACAAATGGACAACGTGGCCATTGCCTACGAGCCGGTATGGGCCAT
CGGCACGGGCCTAACCGCCACCCCCGAGATCGCCCAAGACGTGCATGCGA
ACATCCGGAAGATCCTGTCCGAGGCCTACGGGAAGGACGTGAGCGACAAG
GTGGTGATCCAGTACGGAGGGAGCGTGACGCCCGAGACGGTGGACGAGTT
GATGGCCATGCCCGACATCGACGGCGCCTTGGTGGGCGGCGCGTCCTTGG
TAGGAGAGAAATTTGCGCGAATAATCAACCACAAGTGA

Synonyms

Publications