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Properties
| Property Name | Value |
|---|
| TranscriptId | 629958 |
| Track | FilteredModels2 |
| ProteinId | 629872 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_9 | supercontig | scaffold_9:218081..220523 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4621 ID=mRNA_4621|Name=jgi.p|Nanoce1779_2|629872|organism=Nannochloropsis oceanica|type=mRNA|length=1832bp
GCCGTAGCCCTGATCGTCGTCGTTTTTTGTAGTTGTTGTCGTCGTGTCTG
TTGTTGTTGTTCCTTGCTGTGTGGTTTATATGCATATGTGGAAGGGAAGG
CGTACGTCAAGTCCAAGTTGATGTGTGGCAACAAGCCATTTAAATAGCCA
CCGCACGCAGCGCGCACCCTCATCACTCGTCATTTGCCTCGTTGATCACA
TTGTGCTTGTGAAGTGTCCCTCCTATCGGCGCTCCGAGCAAGCATCTCCC
AAGGGCACGGCAACAGGGCAAAGCGTGCGTCGGTGCGTGTGGCTCGCCAA
CAAGACAAGATACGAAGCCGCGCTCGCGCAAAAGCGCTCTGTCGTGGCAT
CTTGGAGGCATTCCTGTGTGTTAAGTTCGCATTAAACTATGGAAATATGG
GACTGTTTTTTGTTGTAAGAGGCAAGGAAAACCAGCATCTCGAGGAAAGT
GTGAGAGCCGTCCAATTTGTAGACCTTACCTCCCCTTCAACCCCCCCAGA
CACTACACTGCAGCACGACGCTACGTCTCAACATTCCCACGTACGCCCCC
GCCAGCTAGGCCCCCCTAGAGTATGAGCATGTCTCACTCCACGCGCACTG
CAGGATCCCCACCCCAAATTAACCTTGACAAGTTTCAAGTTTCCTCCACT
TTCAGTAGGCATTCCTTGTCCTGCTCATATTGCTTCCATCCCTCATCAAA
CAGGCCCTAATATATTGCCCCCCGACCCCTCCGTATAAGCCACCATGGCT
CCCACAAGCCAAGGCAACGAAGCCGCAACCACCCAAGCTATCGCCCCACT
CCGCGTCGCCCTCCTGGGCATGTTTGCATCCGGGCTCCTTTCCCTCTATT
TTGCCCACGACCACCCCTATCTGACCGCCCTCCCATGCGTCCTCATCAAT
TGCTGCTTCCTCCAGATCTCCTTCCCCCATGGTCTCCTCTTCTCGCTCAT
CGAGATCCCATGGATGATGCTTTTGTTTTATCCGATTCAGTACCTCTTGC
ATATCCCGTTGCAATACGCATTCTTTTGGCTCTACTCCCCCATCTTTGTT
GTCCTGGCCCGGAAGAACAAAGACAGGCATAACCCCCTCGGGCGTTTATT
CATTCGCTATGTATGGGACCCCCCTCTATTGGCCTGCATTTGGTTGGTGG
GAAAGACCGGTCTAGGGGGAGACAGATTTCTGACGCCCTTCGCGAGTATC
ATCGATGAGGAAGTGGTGATGGGCTCCCTCCCCTTGCCCTGGGATGTGGC
TCACTTAGTCAAGGAGTTCAACATCGGCGCAGTCGTGAACATGACCATCG
AATACCCTGGGCCGTTGGAGGAATATGCTCTACATGGGGTCGAACAACTG
CACTTGCCGACCGTAGACACGGCAGCTCCCACTCTAGAGCAGGTGCACCA
AGGCGTGGATTTCATTGCAGCTTTCCTCAAGGCTCATCCGGGGAAGCGCG
TTTTTATCCATTGCAAGGGGGGACGGGGAAGGGCGGCCGTCATGGCTGCG
GCGTGGTACTTGCAGAAGGCGGGAGGGAAGGAGGCACCGAGGTCGGTCGT
GCGGAGATTGAAAGAGAAGAGGCATGTCGTATCAACAGCGGTGGAAAAAT
ACGAGACGGTGCAGGCATATCATGCCCTGGTGGTGAAAGAGGGTGGGAAG
GAGGAAGGGATGGAGGAGATGGTGGTGGATGAGAGGACAATGACACGAAC
GACGACGACGGCGACAAGTGTGACGAGAAGGAAGGTTGAGTAGGGAGGGA
GGGAGGGATGAAAGGAATGTAGGGAAAGCACCAATGTGCACATAGGAAGG
GGGGGTGAAAAAGAACAATAATAAAGTACAAG back to topprotein sequence of jgi.p|Nanoce1779_2|629872 >mRNA_4621-protein ID=mRNA_4621-protein|Name=jgi.p|Nanoce1779_2|629872|organism=Nannochloropsis oceanica|type=polypeptide|length=333bp
MAPTSQGNEAATTQAIAPLRVALLGMFASGLLSLYFAHDHPYLTALPCVL
INCCFLQISFPHGLLFSLIEIPWMMLLFYPIQYLLHIPLQYAFFWLYSPI
FVVLARKNKDRHNPLGRLFIRYVWDPPLLACIWLVGKTGLGGDRFLTPFA
SIIDEEVVMGSLPLPWDVAHLVKEFNIGAVVNMTIEYPGPLEEYALHGVE
QLHLPTVDTAAPTLEQVHQGVDFIAAFLKAHPGKRVFIHCKGGRGRAAVM
AAAWYLQKAGGKEAPRSVVRRLKEKRHVVSTAVEKYETVQAYHALVVKEG
GKEEGMEEMVVDERTMTRTTTTATSVTRRKVE* back to topmRNA from alignment at scaffold_9:218081..220523- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4621 ID=mRNA_4621|Name=jgi.p|Nanoce1779_2|629872|organism=Nannochloropsis oceanica|type=mRNA|length=2443bp|location=Sequence derived from alignment at scaffold_9:218081..220523- (Nannochloropsis oceanica)
GCCGTAGCCCTGATCGTCGTCGTTTTTTGTAGTTGTTGTCGTCGTGTCTG
TTGTTGTTGTTCCTTGCTGTGTGGTTTATATGCATATGTGGAAGGGAAGG
CGTACGTCAAGTCCAAGTTGATGTGTGGCAACAAGCCATTTAAATAGCCA
CCGCACGCAGCGCGCACCCTCATCACTCGTCATTTGCCTCGTTGATCACA
TTGTGCTTGTGAAGTGTCCCTCCTATCGGCGCTCCGAGCAAGCATCTCCC
AAGGGCACGGCAACAGGGCAAAGCGTGCGTCGGTGCGTGTGGCTCGCCAA
CAAGACAAGATACGAAGCCGCGCTCGCGCAAAAGCGCTCTGTCGTGGCAT
CTTGGAGGCATTCCTGTGTGTTAAGTTCGCATTAAACTATGGAAATATGG
GACTGTTTTTTGTTGTAAGAGGCAAGGAAAACCAGCATCTCGAGGAAAGT
GTGAGAGCCGTCCAATTTGTAGACCTTACCTCCCCTTCAACCCCCCCAGA
CACTACACTGCAGCACGACGCTACGTCTCAACATTCCCACGTACGCCCCC
GCCAGCTAGGCCCCCCTAGAGTATGAGCATGTCTCACTCCACGCGCACTG
CAGGATCCCCACCCCAAATTAACCTTGACAAGTTTCAAGTTTCCTCCACT
TTCAGTAGGCATTCCTTGTCCTGCTCATATTGCTTCCATCCCTCATCAAA
CAGGCCCTAATATATTGCCCCCCGACCCCTCCGTATAAGCCACCATGGCT
CCCACAAGCCAAGGCAACGAAGCCGCAACCACCCAAGCTATCGCCCCACT
CCGCGTCGCCCTCCTGGGCATGTTTGCATCCGGGCTCCTTTCCCTCTATT
TTGCCCACGACCACCCCTATCTGACCGCCCTCCCATGCGTCCTCATCAAT
TGCTGCTTCCTCCAGATCTCCTTCCCCCATGGTCTCCTCTTCTCGCTCAT
CGAGATCCCATGGATGATGCTTTTGTTTTATCCGATTCAGTACCTCTTGC
ATATCCCGTTGCAATACGCATTCTTTTGGCTCTACTCCCCCATCTTTGTT
GTCCTGGCCCGGAAGAACAAAGACAGGCATAACCCCCTCGGGCGTTTATT
CATTCGCTATGTATGGGACCCCCCTCTATTGGCCTGCATTTGGTTGGTGG
GAAAGACCGGTCTAGGGGGAGACAGATTTCTGACGCCCTTCGCGAGTATC
ATCGATGAGGAAGTGGTGATGGTGAGTGAGTCGGAGGGAAGGAAGGGAGG
GTAGGAGGGATATGTGGTGGACGGCGCGTCAGGTCAGATGAAGAGATGCG
GAAAAGAGGGCGAGCACGACTCAAGGAAATATGACATTGATAATCAAAAA
TCACTTCGGTGACGAAATTCGCCGCCTTAACTCTCTTCCTCCCTCCACAG
GGCTCCCTCCCCTTGCCCTGGGATGTGGCTCACTTAGTCAAGGAGTTCAA
CATCGGCGCAGTCGTGAACATGACCATCGAATACCCTGGGCCGTTGGAGG
AATATGCTCTACATGGGGTCGAACAACTGCACTTGCCGACCGTAGACACG
GCAGCTCCCACTCTAGAGCAGGTACGTACACAGAGCGAGGTCTACCTCTT
TGTTCCCCGTCTTATCTTCCCCCCCCACCGGGCCAAAGCATCTAGTGGTG
GAAAGGACAGCGAAGAAGGTGGATGCCCCCCCCAACCCCCCCCCATTCGC
AAGCCCTTCTTCCCCCCTCCTTATGCAAACCCGCACACCTGAATCAGTGA
CGTGGCATACAGCGTTCCCCCTCTGCCTACACGTCTTCCTTCCGAGGGTG
GAATCATCTCCTGCCCTACTCTTTATTTTGAATACCTCCTGGACACCGGG
TGCATTTAGAGAGGGTGTTGGTTGTAGACTGTCGTCAGGGAGTATCATTC
GCAGAGAATCCCAGGGCCAATACCGGAAAACCCCGTCGCGGTCTTTGCTC
CCTGCGAGCGTTCACCAACCCTCCCTCCCTCCCTCCCTCCTTCCCGTCCG
TAGGTGCACCAAGGCGTGGATTTCATTGCAGCTTTCCTCAAGGCTCATCC
GGGGAAGCGCGTTTTTATCCATTGCAAGGGGGGACGGGGAAGGGCGGCCG
TCATGGCTGCGGCGTGGTACTTGCAGAAGGCGGGAGGGAAGGAGGCACCG
AGGTCGGTCGTGCGGAGATTGAAAGAGAAGAGGCATGTCGTATCAACAGC
GGTGGAAAAATACGAGACGGTGCAGGCATATCATGCCCTGGTGGTGAAAG
AGGGTGGGAAGGAGGAAGGGATGGAGGAGATGGTGGTGGATGAGAGGACA
ATGACACGAACGACGACGACGGCGACAAGTGTGACGAGAAGGAAGGTTGA
GTAGGGAGGGAGGGAGGGATGAAAGGAATGTAGGGAAAGCACCAATGTGC
ACATAGGAAGGGGGGGTGAAAAAGAACAATAATAAAGTACAAG back to topCoding sequence (CDS) from alignment at scaffold_9:218081..220523- >mRNA_4621 ID=mRNA_4621|Name=jgi.p|Nanoce1779_2|629872|organism=Nannochloropsis oceanica|type=CDS|length=2997bp|location=Sequence derived from alignment at scaffold_9:218081..220523- (Nannochloropsis oceanica)
GTGCACCAAGGCGTGGATTTCATTGCAGCTTTCCTCAAGGCTCATCCGGG
GAAGCGCGTTTTTATCCATTGCAAGGGGGGACGGGGAAGGGCGGCCGTCA
TGGCTGCGGCGTGGTACTTGCAGAAGGCGGGAGGGAAGGAGGCACCGAGG
TCGGTCGTGCGGAGATTGAAAGAGAAGAGGCATGTCGTATCAACAGCGGT
GGAAAAATACGAGACGGTGCAGGCATATCATGCCCTGGTGGTGAAAGAGG
GTGGGAAGGAGGAAGGGATGGAGGAGATGGTGGTGGATGAGAGGACAATG
ACACGAACGACGACGACGGCGACAAGTGTGACGAGAAGGAAGGTTGAGTA
GGGCTCCCTCCCCTTGCCCTGGGATGTGGCTCACTTAGTCAAGGAGTTCA
ACATCGGCGCAGTCGTGAACATGACCATCGAATACCCTGGGCCGTTGGAG
GAATATGCTCTACATGGGGTCGAACAACTGCACTTGCCGACCGTAGACAC
GGCAGCTCCCACTCTAGAGCAGATGGCTCCCACAAGCCAAGGCAACGAAG
CCGCAACCACCCAAGCTATCGCCCCACTCCGCGTCGCCCTCCTGGGCATG
TTTGCATCCGGGCTCCTTTCCCTCTATTTTGCCCACGACCACCCCTATCT
GACCGCCCTCCCATGCGTCCTCATCAATTGCTGCTTCCTCCAGATCTCCT
TCCCCCATGGTCTCCTCTTCTCGCTCATCGAGATCCCATGGATGATGCTT
TTGTTTTATCCGATTCAGTACCTCTTGCATATCCCGTTGCAATACGCATT
CTTTTGGCTCTACTCCCCCATCTTTGTTGTCCTGGCCCGGAAGAACAAAG
ACAGGCATAACCCCCTCGGGCGTTTATTCATTCGCTATGTATGGGACCCC
CCTCTATTGGCCTGCATTTGGTTGGTGGGAAAGACCGGTCTAGGGGGAGA
CAGATTTCTGACGCCCTTCGCGAGTATCATCGATGAGGAAGTGGTGATGG
TGCACCAAGGCGTGGATTTCATTGCAGCTTTCCTCAAGGCTCATCCGGGG
AAGCGCGTTTTTATCCATTGCAAGGGGGGACGGGGAAGGGCGGCCGTCAT
GGCTGCGGCGTGGTACTTGCAGAAGGCGGGAGGGAAGGAGGCACCGAGGT
CGGTCGTGCGGAGATTGAAAGAGAAGAGGCATGTCGTATCAACAGCGGTG
GAAAAATACGAGACGGTGCAGGCATATCATGCCCTGGTGGTGAAAGAGGG
TGGGAAGGAGGAAGGGATGGAGGAGATGGTGGTGGATGAGAGGACAATGA
CACGAACGACGACGACGGCGACAAGTGTGACGAGAAGGAAGGTTGAGTAG
GGCTCCCTCCCCTTGCCCTGGGATGTGGCTCACTTAGTCAAGGAGTTCAA
CATCGGCGCAGTCGTGAACATGACCATCGAATACCCTGGGCCGTTGGAGG
AATATGCTCTACATGGGGTCGAACAACTGCACTTGCCGACCGTAGACACG
GCAGCTCCCACTCTAGAGCAGATGGCTCCCACAAGCCAAGGCAACGAAGC
CGCAACCACCCAAGCTATCGCCCCACTCCGCGTCGCCCTCCTGGGCATGT
TTGCATCCGGGCTCCTTTCCCTCTATTTTGCCCACGACCACCCCTATCTG
ACCGCCCTCCCATGCGTCCTCATCAATTGCTGCTTCCTCCAGATCTCCTT
CCCCCATGGTCTCCTCTTCTCGCTCATCGAGATCCCATGGATGATGCTTT
TGTTTTATCCGATTCAGTACCTCTTGCATATCCCGTTGCAATACGCATTC
TTTTGGCTCTACTCCCCCATCTTTGTTGTCCTGGCCCGGAAGAACAAAGA
CAGGCATAACCCCCTCGGGCGTTTATTCATTCGCTATGTATGGGACCCCC
CTCTATTGGCCTGCATTTGGTTGGTGGGAAAGACCGGTCTAGGGGGAGAC
AGATTTCTGACGCCCTTCGCGAGTATCATCGATGAGGAAGTGGTGATGGT
GCACCAAGGCGTGGATTTCATTGCAGCTTTCCTCAAGGCTCATCCGGGGA
AGCGCGTTTTTATCCATTGCAAGGGGGGACGGGGAAGGGCGGCCGTCATG
GCTGCGGCGTGGTACTTGCAGAAGGCGGGAGGGAAGGAGGCACCGAGGTC
GGTCGTGCGGAGATTGAAAGAGAAGAGGCATGTCGTATCAACAGCGGTGG
AAAAATACGAGACGGTGCAGGCATATCATGCCCTGGTGGTGAAAGAGGGT
GGGAAGGAGGAAGGGATGGAGGAGATGGTGGTGGATGAGAGGACAATGAC
ACGAACGACGACGACGGCGACAAGTGTGACGAGAAGGAAGGTTGAGTAGG
GCTCCCTCCCCTTGCCCTGGGATGTGGCTCACTTAGTCAAGGAGTTCAAC
ATCGGCGCAGTCGTGAACATGACCATCGAATACCCTGGGCCGTTGGAGGA
ATATGCTCTACATGGGGTCGAACAACTGCACTTGCCGACCGTAGACACGG
CAGCTCCCACTCTAGAGCAGATGGCTCCCACAAGCCAAGGCAACGAAGCC
GCAACCACCCAAGCTATCGCCCCACTCCGCGTCGCCCTCCTGGGCATGTT
TGCATCCGGGCTCCTTTCCCTCTATTTTGCCCACGACCACCCCTATCTGA
CCGCCCTCCCATGCGTCCTCATCAATTGCTGCTTCCTCCAGATCTCCTTC
CCCCATGGTCTCCTCTTCTCGCTCATCGAGATCCCATGGATGATGCTTTT
GTTTTATCCGATTCAGTACCTCTTGCATATCCCGTTGCAATACGCATTCT
TTTGGCTCTACTCCCCCATCTTTGTTGTCCTGGCCCGGAAGAACAAAGAC
AGGCATAACCCCCTCGGGCGTTTATTCATTCGCTATGTATGGGACCCCCC
TCTATTGGCCTGCATTTGGTTGGTGGGAAAGACCGGTCTAGGGGGAGACA
GATTTCTGACGCCCTTCGCGAGTATCATCGATGAGGAAGTGGTGATG back to top
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