jgi.p|Nanoce1779_2|587217, mRNA_4620 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|587217
Unique Name	mRNA_4620
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1713
Alignment location	scaffold_9:215749..217635 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	587303
Track	FilteredModels2
ProteinId	587217

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:215749..217635 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587217	gene_4620	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587217	mRNA_4620-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4620	CDS_4620	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:215749..217635+
coding sequence from alignment at scaffold_9:215749..217635+

mRNA sequence

>mRNA_4620 ID=mRNA_4620|Name=jgi.p|Nanoce1779_2|587217|organism=Nannochloropsis oceanica|type=mRNA|length=1713bp
ACAGGGGTAGTCATGGCGACGCGACCACTCTCTTCCCGTCCGCCACGGCC
ACCACGCCTTCTCCTCCTCTCCATGGCCTTGCTAGCTGCCGCCACCACCG
TCAAGGCCTTCCAGCTGCCCCTCCTTCCCAGCAGCACTCGCATCGGCAGT
ACCATCTGTATCACTGACACTAGAATACTACCGCACGCCCTGCGGCCCCG
CACACGCCCTTCTTCCTCCCCTCTATTCGCATCTGCAGCCGCGGCAGCTC
CCGGACAATCAGAGAACAGTAGCTCAAGAAGACGTCGTGCCATTCCTCCC
TTCGTCTCCGCCTTCCTCCGCTCCCGTCGCTCCGCCTCCTCTCCTTCTAC
CAGCAACAAAACCTCCAAAGCCCTTAGAATAATGATGGGCGCCTTGGCAG
TCACCTGTCTCACTGGCACGATAACCCATGCTCTGCCTTCCCATCTTCTC
CACCCATCCTCGTCCCCCGCCGGACGCTCCCTCCTCTCAGCCACCACCGC
CGCGGCCGCCCCTCTTTCCGCCCTTCAAGACAAGCTTAGTCAAACCCTTG
GCCAAGGCCCACTTGCTCCCATTGCCACGCTCCTCTCCTGGGTGCTGGAC
GCGGTGGAAGTCACCCTGGACAGCTTTGGTTGGCTCCTCCGCCTCATCCT
CTGGCCCATCCTGACCCCCCTCAACTTCCTCCTCCATCACTTCCTCCTCC
CCTCCCTCCCCCTCCTCACTGCCCCCCGCACCGCCATTCCCGCCCTCCTC
CATTCCCTCTACTCCTCGCTTATTTTTTTCTCCCGCCAAGTGTCTGCGGG
CATGTCCGCCTACACCCAAGGTCTGCTCGCCCTCGCCTTCTCCACCCTCG
GCGTGACGTACCAGTCGCTCTGCAGCTTCCTTGGCCTCTTTTTCAACCTC
CCCGGCCTTCAGTACCTCGACGCCATGGACCCCCGTCGTCACATCCCTTC
CACGCCCACCCGCTTCGTCCTCCCCTCCACCCCTGTCTCCCTCCCGTCCC
CCTCCTCCTTCTCGCTCCAGCAGATGTACGGTCGCCGGTGGCGAGTGCAT
GCCGGGAAGTGGAGCCTGGTTGTACCCTATTGGGAGAGGGTAGTGATGGA
GTCGCAGCTGGCGCGGTATCAGAACACGTTTCACAGGAGTGTGGTGAAGG
CCAGGTTTGGCTTCCCGGAAATCATCCGAGGCCCTTCCCCTTTGTTGGGC
GGGACGTTTTTAGTGCTGACGGGTATCTACCTCATCTATCGCGGGCACAT
GACCAGCGCCGTGTGGATCCGGCAGCTGCAAAAAGAGACTTATGGAGATC
GGGCTTGGAACCCCCAGACGAGGCTAGAGGAGGAGGAGGGCGAGGAGGGC
GGGGAGGAAGGAGGGGAGGGGGAGGGAGGAGGAGGGAACAAGGAGTAAAA
GAGGATGGAAAAGAAGAGGAATATAAGAGATGACGATGGAGATGTCTTGA
TAGGTTAGGTCGGAGAGAGGGAGGAAGGCGGGAGAGAAATCTTCTTTGCC
GACGAGCGTGCGAGGTGCGAGGAGTCCGTGACGTAATGACAGGGAGTGGG
CGCCAAGAGGCCCCTCTGTGTGTGTTGTGATTCGACACCAAAAAGACCTC
GGGAGAGAGGAAGAAAAAGAAGAAAGAGGGCACTCGATAACATTGAGAGG
GAGACAGAGGAAGGAGGACAGGACATGCAAGAAGAATAAATGAAGAAAAC
AGACGCATGAACA

protein sequence of jgi.p|Nanoce1779_2|587217

>mRNA_4620-protein ID=mRNA_4620-protein|Name=jgi.p|Nanoce1779_2|587217|organism=Nannochloropsis oceanica|type=polypeptide|length=462bp
MATRPLSSRPPRPPRLLLLSMALLAAATTVKAFQLPLLPSSTRIGSTICI
TDTRILPHALRPRTRPSSSPLFASAAAAAPGQSENSSSRRRRAIPPFVSA
FLRSRRSASSPSTSNKTSKALRIMMGALAVTCLTGTITHALPSHLLHPSS
SPAGRSLLSATTAAAAPLSALQDKLSQTLGQGPLAPIATLLSWVLDAVEV
TLDSFGWLLRLILWPILTPLNFLLHHFLLPSLPLLTAPRTAIPALLHSLY
SSLIFFSRQVSAGMSAYTQGLLALAFSTLGVTYQSLCSFLGLFFNLPGLQ
YLDAMDPRRHIPSTPTRFVLPSTPVSLPSPSSFSLQQMYGRRWRVHAGKW
SLVVPYWERVVMESQLARYQNTFHRSVVKARFGFPEIIRGPSPLLGGTFL
VLTGIYLIYRGHMTSAVWIRQLQKETYGDRAWNPQTRLEEEEGEEGGEEG
GEGEGGGGNKE*

mRNA from alignment at scaffold_9:215749..217635+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4620 ID=mRNA_4620|Name=jgi.p|Nanoce1779_2|587217|organism=Nannochloropsis oceanica|type=mRNA|length=1887bp|location=Sequence derived from alignment at scaffold_9:215749..217635+ (Nannochloropsis oceanica)
ACAGGGGTAGTCATGGCGACGCGACCACTCTCTTCCCGTCCGCCACGGCC
ACCACGCCTTCTCCTCCTCTCCATGGCCTTGCTAGCTGCCGCCACCACCG
TCAAGGCCTTCCAGCTGCCCCTCCTTCCCAGCAGCACTCGCATCGGCAGT
ACCATCTGTATCACTGACACTAGAATACTACCGCACGCCCTGCGGCCCCG
CACACGCCCTTCTTCCTCCCCTCTATTCGCATCTGCAGCCGCGGCAGCTC
CCGGACAATCAGAGAACAGTAGCTCAAGAAGACGTCGTGCCATTCCTCCC
TTCGTCTCCGCCTTCCTCCGCTCCCGTCGCTCCGCCTCCTCTCCTTCTAC
CAGCAACAAAACCTCCAAAGCCCTTAGAATAATGATGGGCGCCTTGGCAG
TCACCTGTCTCACTGGCACGATAACCCATGCTCTGCCTTCCCATCTTCTC
CACCCATCCTCGTCCCCCGCCGGACGCTCCCTCCTCTCAGCCACCACCGC
CGCGGCCGCCCCTCTTTCCGCCCTTCAAGACAAGCTTAGTCAAACCCTTG
GCCAAGGCCCACTTGCTCCCATTGCCACGCTCCTCTCCTGGGTGCTGGAC
GCGGTGGAAGTCACCCTGGACAGCTTTGGTTGGCTCCTCCGCCTCATCCT
CTGGCCCATCCTGACCCCCCTCAACTTCCTCCTCCATCACTTCCTCCTCC
CCTCCCTCCCCCTCCTCACTGCCCCCCGCACCGCCATTCCCGCCCTCCTC
CATTCCCTCTACTCCTCGCTTATTTTTTTCTCCCGCCAAGTGTCTGCGGG
CATGTCCGCCTACACCCAAGGTCTGCTCGCCCTCGCCTTCTCCACCCTCG
GCGTGACGTACCAGTCGCTCTGCAGCTTCCTTGGCCTCTTTTTCAACCTC
CCCGGCCTTCAGTACCTCGACGCCATGGACCCCCGTCGTCACATCCCTTC
CACGCCCACCCGCTTCGTCCTCCCCTCCACCCCTGTCTCCCTCCCGTCCC
CCTCCTCCTTCTCGCTCCAGCAGATGTACGGTCGCCGGTGGCGAGTGCAT
GCCGGGAAGTGGAGCCTGGTTGTACCCTATTGGGAGAGGGTAGTGATGGA
GTCGCAGCTGGCGCGGTATCAGAACACGTTTCACAGGAGTGTGGTGAAGG
CCAGGTTTGGCTTCCCGGAAATCATCCGAGGCCCTTCCCCTTTGTTGGGC
GGGACGTTTTTAGTGCTGACGGTAAGCAAGGTCTCCCTCCCTCCCTCCCT
CTCTCCCTCCCTCCTTCAGGGCATCTCCCTTATCTATCGCGGGCGCATGA
CCAGTGCTGTGTGGATCCGTCAGCTGTAGAGACAAATCCCCTTCAGAGGC
ATTCATCCCTTCCTCCCTCCCTCCCTCCCTTCCTCCCTCCTTCAGGGTAT
CTACCTCATCTATCGCGGGCACATGACCAGCGCCGTGTGGATCCGGCAGC
TGCAAAAAGAGACTTATGGAGATCGGGCTTGGAACCCCCAGACGAGGCTA
GAGGAGGAGGAGGGCGAGGAGGGCGGGGAGGAAGGAGGGGAGGGGGAGGG
AGGAGGAGGGAACAAGGAGTAAAAGAGGATGGAAAAGAAGAGGAATATAA
GAGATGACGATGGAGATGTCTTGATAGGTTAGGTCGGAGAGAGGGAGGAA
GGCGGGAGAGAAATCTTCTTTGCCGACGAGCGTGCGAGGTGCGAGGAGTC
CGTGACGTAATGACAGGGAGTGGGCGCCAAGAGGCCCCTCTGTGTGTGTT
GTGATTCGACACCAAAAAGACCTCGGGAGAGAGGAAGAAAAAGAAGAAAG
AGGGCACTCGATAACATTGAGAGGGAGACAGAGGAAGGAGGACAGGACAT
GCAAGAAGAATAAATGAAGAAAACAGACGCATGAACA

Coding sequence (CDS) from alignment at scaffold_9:215749..217635+

>mRNA_4620 ID=mRNA_4620|Name=jgi.p|Nanoce1779_2|587217|organism=Nannochloropsis oceanica|type=CDS|length=2772bp|location=Sequence derived from alignment at scaffold_9:215749..217635+ (Nannochloropsis oceanica)
ATGGCGACGCGACCACTCTCTTCCCGTCCGCCACGGCCACCACGCCTTCT
CCTCCTCTCCATGGCCTTGCTAGCTGCCGCCACCACCGTCAAGGCCTTCC
AGCTGCCCCTCCTTCCCAGCAGCACTCGCATCGGCAGTACCATCTGTATC
ACTGACACTAGAATACTACCGCACGCCCTGCGGCCCCGCACACGCCCTTC
TTCCTCCCCTCTATTCGCATCTGCAGCCGCGGCAGCTCCCGGACAATCAG
AGAACAGTAGCTCAAGAAGACGTCGTGCCATTCCTCCCTTCGTCTCCGCC
TTCCTCCGCTCCCGTCGCTCCGCCTCCTCTCCTTCTACCAGCAACAAAAC
CTCCAAAGCCCTTAGAATAATGATGGGCGCCTTGGCAGTCACCTGTCTCA
CTGGCACGATAACCCATGCTCTGCCTTCCCATCTTCTCCACCCATCCTCG
TCCCCCGCCGGACGCTCCCTCCTCTCAGCCACCACCGCCGCGGCCGCCCC
TCTTTCCGCCCTTCAAGACAAGCTTAGTCAAACCCTTGGCCAAGGCCCAC
TTGCTCCCATTGCCACGCTCCTCTCCTGGGTGCTGGACGCGGTGGAAGTC
ACCCTGGACAGCTTTGGTTGGCTCCTCCGCCTCATCCTCTGGCCCATCCT
GACCCCCCTCAACTTCCTCCTCCATCACTTCCTCCTCCCCTCCCTCCCCC
TCCTCACTGCCCCCCGCACCGCCATTCCCGCCCTCCTCCATTCCCTCTAC
TCCTCGCTTATTTTTTTCTCCCGCCAAGTGTCTGCGGGCATGTCCGCCTA
CACCCAAGGTCTGCTCGCCCTCGCCTTCTCCACCCTCGGCGTGACGTACC
AGTCGCTCTGCAGCTTCCTTGGCCTCTTTTTCAACCTCCCCGGCCTTCAG
TACCTCGACGCCATGGACCCCCGTCGTCACATCCCTTCCACGCCCACCCG
CTTCGTCCTCCCCTCCACCCCTGTCTCCCTCCCGTCCCCCTCCTCCTTCT
CGCTCCAGCAGATGTACGGTCGCCGGTGGCGAGTGCATGCCGGGAAGTGG
AGCCTGGTTGTACCCTATTGGGAGAGGGTAGTGATGGAGTCGCAGCTGGC
GCGGTATCAGAACACGTTTCACAGGAGTGTGGTGAAGGCCAGGTTTGGCT
TCCCGGAAATCATCCGAGGCCCTTCCCCTTTGTTGGGCGGGACGTTTTTA
GTGCTGACGGGTATCTACCTCATCTATCGCGGGCACATGACCAGCGCCGT
GTGGATCCGGCAGCTGCAAAAAGAGACTTATGGAGATCGGGCTTGGAACC
CCCAGACGAGGCTAGAGGAGGAGGAGGGCGAGGAGGGCGGGGAGGAAGGA
GGGGAGGGGGAGGGAGGAGGAGGGAACAAGGAGTAAATGGCGACGCGACC
ACTCTCTTCCCGTCCGCCACGGCCACCACGCCTTCTCCTCCTCTCCATGG
CCTTGCTAGCTGCCGCCACCACCGTCAAGGCCTTCCAGCTGCCCCTCCTT
CCCAGCAGCACTCGCATCGGCAGTACCATCTGTATCACTGACACTAGAAT
ACTACCGCACGCCCTGCGGCCCCGCACACGCCCTTCTTCCTCCCCTCTAT
TCGCATCTGCAGCCGCGGCAGCTCCCGGACAATCAGAGAACAGTAGCTCA
AGAAGACGTCGTGCCATTCCTCCCTTCGTCTCCGCCTTCCTCCGCTCCCG
TCGCTCCGCCTCCTCTCCTTCTACCAGCAACAAAACCTCCAAAGCCCTTA
GAATAATGATGGGCGCCTTGGCAGTCACCTGTCTCACTGGCACGATAACC
CATGCTCTGCCTTCCCATCTTCTCCACCCATCCTCGTCCCCCGCCGGACG
CTCCCTCCTCTCAGCCACCACCGCCGCGGCCGCCCCTCTTTCCGCCCTTC
AAGACAAGCTTAGTCAAACCCTTGGCCAAGGCCCACTTGCTCCCATTGCC
ACGCTCCTCTCCTGGGTGCTGGACGCGGTGGAAGTCACCCTGGACAGCTT
TGGTTGGCTCCTCCGCCTCATCCTCTGGCCCATCCTGACCCCCCTCAACT
TCCTCCTCCATCACTTCCTCCTCCCCTCCCTCCCCCTCCTCACTGCCCCC
CGCACCGCCATTCCCGCCCTCCTCCATTCCCTCTACTCCTCGCTTATTTT
TTTCTCCCGCCAAGTGTCTGCGGGCATGTCCGCCTACACCCAAGGTCTGC
TCGCCCTCGCCTTCTCCACCCTCGGCGTGACGTACCAGTCGCTCTGCAGC
TTCCTTGGCCTCTTTTTCAACCTCCCCGGCCTTCAGTACCTCGACGCCAT
GGACCCCCGTCGTCACATCCCTTCCACGCCCACCCGCTTCGTCCTCCCCT
CCACCCCTGTCTCCCTCCCGTCCCCCTCCTCCTTCTCGCTCCAGCAGATG
TACGGTCGCCGGTGGCGAGTGCATGCCGGGAAGTGGAGCCTGGTTGTACC
CTATTGGGAGAGGGTAGTGATGGAGTCGCAGCTGGCGCGGTATCAGAACA
CGTTTCACAGGAGTGTGGTGAAGGCCAGGTTTGGCTTCCCGGAAATCATC
CGAGGCCCTTCCCCTTTGTTGGGCGGGACGTTTTTAGTGCTGACGGGTAT
CTACCTCATCTATCGCGGGCACATGACCAGCGCCGTGTGGATCCGGCAGC
TGCAAAAAGAGACTTATGGAGATCGGGCTTGGAACCCCCAGACGAGGCTA
GAGGAGGAGGAGGGCGAGGAGGGCGGGGAGGAAGGAGGGGAGGGGGAGGG
AGGAGGAGGGAACAAGGAGTAA

Synonyms

Publications