jgi.p|Nanoce1779_2|577380, mRNA_462 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577380
Unique NamemRNA_462
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length867
Alignment locationscaffold_3:1125979..1127056 +

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Properties
Property NameValue
TranscriptId577466
TrackFilteredModels2
ProteinId577380
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1125979..1127056 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577380gene_462Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577380mRNA_462-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_462CDS_462Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_462 ID=mRNA_462|Name=jgi.p|Nanoce1779_2|577380|organism=Nannochloropsis oceanica|type=mRNA|length=867bp
CAGGCCGTGCAGGAGTGTTAGAGTCTGTCTCTTTGTCTCCATTACACGTC
ATTGAGACGAGGATGACAAAACCGAACGAGGAGCACCAGCATTTGCAGGC
GGTTAATGAACATGCGACCAAGAAAATAATGAAGGAGACCGACGGACGAG
TCATGAGTCAGGCAGAGGTTGCGGAACTAGAGGCTTTATTTGCCAATCAC
GAGCGCGTCAAGGCTTTTCCTGTCTCACATCCGCTACTAGACATCCCTGC
GTCCACGCAAGCGAAAGTGGTGTACTTTGTCCGGCATGCGGAAGCCTTGC
ACAACGAGGCCTTCAAGATCCGTGGCCGGGCCGCCTACTCAGACCCCGCG
TTTCTTGACCCAGAACTGACAGCGCTGGGTATCGCGCAGTGCGGGACCCT
TAAACCCTCTGTGGAGGCCATTCAAGATTCCTTAGACTTGGTGGTCGTTT
CTCCCTTGCGTCGCACTCTCATGACGGCCGCCTTGGCATTCGATCAACGA
AAAGGCACACCCTGGGTCGCGCACGAATTGGTGCGAGAGCGGATCGGGAA
GAACACATGTGATAAACGGCGGGCATTGACGGAGATAAAACAGGAGTATC
CCTCAATTGATTTCGCGCATATGACACACGAAGACGACGTGTGTTGGACT
CCACACCACCGGGAAACCCCCGCCGAGATGGCCAAGCGAGGATTGATATT
TCTAGAATGGTTACGAGGTCGACCAGAGGCGAGAATTGGGGTGGTGACTC
ATTCGGCATTTTTGTCGACGTTATTTGGAGAGGTCTTGGACTGTCACGAG
CCCGATATGAAGAGGTGGTTTGAGAACGCGGAATTGCGGGCCGTGAGGTT
GCATTTGTGAGGGAGGG
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protein sequence of jgi.p|Nanoce1779_2|577380

>mRNA_462-protein ID=mRNA_462-protein|Name=jgi.p|Nanoce1779_2|577380|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MTKPNEEHQHLQAVNEHATKKIMKETDGRVMSQAEVAELEALFANHERVK
AFPVSHPLLDIPASTQAKVVYFVRHAEALHNEAFKIRGRAAYSDPAFLDP
ELTALGIAQCGTLKPSVEAIQDSLDLVVVSPLRRTLMTAALAFDQRKGTP
WVAHELVRERIGKNTCDKRRALTEIKQEYPSIDFAHMTHEDDVCWTPHHR
ETPAEMAKRGLIFLEWLRGRPEARIGVVTHSAFLSTLFGEVLDCHEPDMK
RWFENAELRAVRLHL*
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mRNA from alignment at scaffold_3:1125979..1127056+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_462 ID=mRNA_462|Name=jgi.p|Nanoce1779_2|577380|organism=Nannochloropsis oceanica|type=mRNA|length=1078bp|location=Sequence derived from alignment at scaffold_3:1125979..1127056+ (Nannochloropsis oceanica)
CAGGCCGTGCAGGAGTGTTAGAGTCTGTCTCTTTGTCTCCATTACACGTC
ATTGAGACGAGGATGACAAAACCGAACGAGGAGCACCAGCATTTGCAGGC
GGTTAATGAACATGCGACCAAGAAAATAATGAAGGAGACCGACGGACGAG
TCATGAGTCAGGCAGAGGTTGCGGAACTAGAGGCTTTATTTGCCAATCAC
GAGCGCGTCAAGGCTTTTCCTGTCTCACATCCGCTACTAGACATCCCTGC
GTCCACGCAAGCGAAAGTGGTGTACTTTGTCCGGCATGCGGAAGGCAAGT
GGAGATGAGAGCGGGGATAAAGGAGAGAGAGTTCCCGTTCGAGCAACCTC
GCCCAGCGTTTGGTAATGATGCCTTTTAACTATATTGACCATAGATTGCA
GTAAGAGTGGACTTGTGTTAAGCCCCCTCCTCGGAGCCCTCCTCCGAAAA
AACCTCCCTACCAACCTCCTCACTCGCACACACAAATACCCTCCACACAC
TTCAGCCTTGCACAACGAGGCCTTCAAGATCCGTGGCCGGGCCGCCTACT
CAGACCCCGCGTTTCTTGACCCAGAACTGACAGCGCTGGGTATCGCGCAG
TGCGGGACCCTTAAACCCTCTGTGGAGGCCATTCAAGATTCCTTAGACTT
GGTGGTCGTTTCTCCCTTGCGTCGCACTCTCATGACGGCCGCCTTGGCAT
TCGATCAACGAAAAGGCACACCCTGGGTCGCGCACGAATTGGTGCGAGAG
CGGATCGGGAAGAACACATGTGATAAACGGCGGGCATTGACGGAGATAAA
ACAGGAGTATCCCTCAATTGATTTCGCGCATATGACACACGAAGACGACG
TGTGTTGGACTCCACACCACCGGGAAACCCCCGCCGAGATGGCCAAGCGA
GGATTGATATTTCTAGAATGGTTACGAGGTCGACCAGAGGCGAGAATTGG
GGTGGTGACTCATTCGGCATTTTTGTCGACGTTATTTGGAGAGGTCTTGG
ACTGTCACGAGCCCGATATGAAGAGGTGGTTTGAGAACGCGGAATTGCGG
GCCGTGAGGTTGCATTTGTGAGGGAGGG
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Coding sequence (CDS) from alignment at scaffold_3:1125979..1127056+

>mRNA_462 ID=mRNA_462|Name=jgi.p|Nanoce1779_2|577380|organism=Nannochloropsis oceanica|type=CDS|length=1596bp|location=Sequence derived from alignment at scaffold_3:1125979..1127056+ (Nannochloropsis oceanica)
ATGACAAAACCGAACGAGGAGCACCAGCATTTGCAGGCGGTTAATGAACA
TGCGACCAAGAAAATAATGAAGGAGACCGACGGACGAGTCATGAGTCAGG
CAGAGGTTGCGGAACTAGAGGCTTTATTTGCCAATCACGAGCGCGTCAAG
GCTTTTCCTGTCTCACATCCGCTACTAGACATCCCTGCGTCCACGCAAGC
GAAAGTGGTGTACTTTGTCCGGCATGCGGAAGCCTTGCACAACGAGGCCT
TCAAGATCCGTGGCCGGGCCGCCTACTCAGACCCCGCGTTTCTTGACCCA
GAACTGACAGCGCTGGGTATCGCGCAGTGCGGGACCCTTAAACCCTCTGT
GGAGGCCATTCAAGATTCCTTAGACTTGGTGGTCGTTTCTCCCTTGCGTC
GCACTCTCATGACGGCCGCCTTGGCATTCGATCAACGAAAAGGCACACCC
TGGGTCGCGCACGAATTGGTGCGAGAGCGGATCGGGAAGAACACATGTGA
TAAACGGCGGGCATTGACGGAGATAAAACAGGAGTATCCCTCAATTGATT
TCGCGCATATGACACACGAAGACGACGTGTGTTGGACTCCACACCACCGG
GAAACCCCCGCCGAGATGGCCAAGCGAGGATTGATATTTCTAGAATGGTT
ACGAGGTCGACCAGAGGCGAGAATTGGGGTGGTGACTCATTCGGCATTTT
TGTCGACGTTATTTGGAGAGGTCTTGGACTGTCACGAGCCCGATATGAAG
AGGTGGTTTGAGAACGCGGAATTGCGGGCCGTGAGGTTGCATTTGTGAAT
GACAAAACCGAACGAGGAGCACCAGCATTTGCAGGCGGTTAATGAACATG
CGACCAAGAAAATAATGAAGGAGACCGACGGACGAGTCATGAGTCAGGCA
GAGGTTGCGGAACTAGAGGCTTTATTTGCCAATCACGAGCGCGTCAAGGC
TTTTCCTGTCTCACATCCGCTACTAGACATCCCTGCGTCCACGCAAGCGA
AAGTGGTGTACTTTGTCCGGCATGCGGAAGCCTTGCACAACGAGGCCTTC
AAGATCCGTGGCCGGGCCGCCTACTCAGACCCCGCGTTTCTTGACCCAGA
ACTGACAGCGCTGGGTATCGCGCAGTGCGGGACCCTTAAACCCTCTGTGG
AGGCCATTCAAGATTCCTTAGACTTGGTGGTCGTTTCTCCCTTGCGTCGC
ACTCTCATGACGGCCGCCTTGGCATTCGATCAACGAAAAGGCACACCCTG
GGTCGCGCACGAATTGGTGCGAGAGCGGATCGGGAAGAACACATGTGATA
AACGGCGGGCATTGACGGAGATAAAACAGGAGTATCCCTCAATTGATTTC
GCGCATATGACACACGAAGACGACGTGTGTTGGACTCCACACCACCGGGA
AACCCCCGCCGAGATGGCCAAGCGAGGATTGATATTTCTAGAATGGTTAC
GAGGTCGACCAGAGGCGAGAATTGGGGTGGTGACTCATTCGGCATTTTTG
TCGACGTTATTTGGAGAGGTCTTGGACTGTCACGAGCCCGATATGAAGAG
GTGGTTTGAGAACGCGGAATTGCGGGCCGTGAGGTTGCATTTGTGA
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Synonyms
Publications