jgi.p|Nanoce1779_2|527383, mRNA_4618 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|527383
Unique NamemRNA_4618
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length720
Alignment locationscaffold_9:212498..213354 +

Link to JBrowse

Properties
Property NameValue
TranscriptId527469
TrackFilteredModels2
ProteinId527383
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:212498..213354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527383gene_4618Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527383mRNA_4618-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4618CDS_4618Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4618 ID=mRNA_4618|Name=jgi.p|Nanoce1779_2|527383|organism=Nannochloropsis oceanica|type=mRNA|length=720bp
ATGGATGAATTCATCGACCAGGACATGATCCCTTTCTTGCAGACCTTTAA
TGCGTGGAGAAAATACCAAGATGTGAGGCAATTGGTCTTGGCGAAGAGGT
TCGCAGGGGTGGCGGCACAGCTGTTGAATGCGCCCCGTGTTCGTCTCTAT
CAAGATTCAACCTTCTTAAAGCGCTGTGGCGACGGTCCAACACTCTGGCA
CTCCGACTTGAACATGGCTCCCTTTCACACCAACGATGCCGTGACATTAT
GGTTACCCCTCACGCCCATCGCCCCGGAGGAAGAAGGAGGGACGGGTCTG
TTGTTCGCCTCCAGGTCGCACCGGGATTTTGCCCTATCATTTTGGGAGGA
TGCCAAGGGGGGAGGGAGGCGAGACCTCGAGGGGAGGTATGAGCTGAAGG
GCTATGGGCGGATGGAGGTGGGGGATGGAAGCTGGCATCATGGCTGGTGC
TTGCATTCGTCGGGGCCAAACGACGAGGACGAGGACCGAGTGGCTCTCAG
CCTTTGTTTCGTGGCGGACGGCGTGGAGATGCTTAATGTGGGGGAGGAGG
GGAAGGGGAGGGGTCCGGACGATGAGGACGAGGAAAGCTATCGGGATTGG
GTGGGAGAGGTGGGGGCGAGGGTGGGGGAGAGGGAGCATGTCTTTTTGCC
CTTGGTTTGGGACGAGGCGTTGGAGAGGGAGGGGAGAGAAGGAGGGGGAG
GGGGAGGGGGAAAGAAGTGA
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protein sequence of jgi.p|Nanoce1779_2|527383

>mRNA_4618-protein ID=mRNA_4618-protein|Name=jgi.p|Nanoce1779_2|527383|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MDEFIDQDMIPFLQTFNAWRKYQDVRQLVLAKRFAGVAAQLLNAPRVRLY
QDSTFLKRCGDGPTLWHSDLNMAPFHTNDAVTLWLPLTPIAPEEEGGTGL
LFASRSHRDFALSFWEDAKGGGRRDLEGRYELKGYGRMEVGDGSWHHGWC
LHSSGPNDEDEDRVALSLCFVADGVEMLNVGEEGKGRGPDDEDEESYRDW
VGEVGARVGEREHVFLPLVWDEALEREGREGGGGGGGKK*
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mRNA from alignment at scaffold_9:212498..213354+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4618 ID=mRNA_4618|Name=jgi.p|Nanoce1779_2|527383|organism=Nannochloropsis oceanica|type=mRNA|length=857bp|location=Sequence derived from alignment at scaffold_9:212498..213354+ (Nannochloropsis oceanica)
ATGGATGAATTCATCGACCAGGACATGATCCCTTTCTTGCAGACCTTTAA
TGCGTGGAGAAAATACCAAGATGTGAGGCAATTGGTCTTGGCGAAGAGGT
TCGCAGGGGTGGCGGCACAGCTGTTGAATGTAAGAGGTGGAGGATAGGGA
GGGAGGGAAGGGGAGGGACGGAAGGCGGAAGAGTCGTCTTGTCCTATGTA
CCTAACCATTGAGTATCCATCTGTTTCTTTCTTTCCCAACCCTCCTACAC
ACACCCAAACACGCAGGCGCCCCGTGTTCGTCTCTATCAAGATTCAACCT
TCTTAAAGCGCTGTGGCGACGGTCCAACACTCTGGCACTCCGACTTGAAC
ATGGCTCCCTTTCACACCAACGATGCCGTGACATTATGGTTACCCCTCAC
GCCCATCGCCCCGGAGGAAGAAGGAGGGACGGGTCTGTTGTTCGCCTCCA
GGTCGCACCGGGATTTTGCCCTATCATTTTGGGAGGATGCCAAGGGGGGA
GGGAGGCGAGACCTCGAGGGGAGGTATGAGCTGAAGGGCTATGGGCGGAT
GGAGGTGGGGGATGGAAGCTGGCATCATGGCTGGTGCTTGCATTCGTCGG
GGCCAAACGACGAGGACGAGGACCGAGTGGCTCTCAGCCTTTGTTTCGTG
GCGGACGGCGTGGAGATGCTTAATGTGGGGGAGGAGGGGAAGGGGAGGGG
TCCGGACGATGAGGACGAGGAAAGCTATCGGGATTGGGTGGGAGAGGTGG
GGGCGAGGGTGGGGGAGAGGGAGCATGTCTTTTTGCCCTTGGTTTGGGAC
GAGGCGTTGGAGAGGGAGGGGAGAGAAGGAGGGGGAGGGGGAGGGGGAAA
GAAGTGA
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Coding sequence (CDS) from alignment at scaffold_9:212498..213354+

>mRNA_4618 ID=mRNA_4618|Name=jgi.p|Nanoce1779_2|527383|organism=Nannochloropsis oceanica|type=CDS|length=1440bp|location=Sequence derived from alignment at scaffold_9:212498..213354+ (Nannochloropsis oceanica)
ATGGATGAATTCATCGACCAGGACATGATCCCTTTCTTGCAGACCTTTAA
TGCGTGGAGAAAATACCAAGATGTGAGGCAATTGGTCTTGGCGAAGAGGT
TCGCAGGGGTGGCGGCACAGCTGTTGAATGCGCCCCGTGTTCGTCTCTAT
CAAGATTCAACCTTCTTAAAGCGCTGTGGCGACGGTCCAACACTCTGGCA
CTCCGACTTGAACATGGCTCCCTTTCACACCAACGATGCCGTGACATTAT
GGTTACCCCTCACGCCCATCGCCCCGGAGGAAGAAGGAGGGACGGGTCTG
TTGTTCGCCTCCAGGTCGCACCGGGATTTTGCCCTATCATTTTGGGAGGA
TGCCAAGGGGGGAGGGAGGCGAGACCTCGAGGGGAGGTATGAGCTGAAGG
GCTATGGGCGGATGGAGGTGGGGGATGGAAGCTGGCATCATGGCTGGTGC
TTGCATTCGTCGGGGCCAAACGACGAGGACGAGGACCGAGTGGCTCTCAG
CCTTTGTTTCGTGGCGGACGGCGTGGAGATGCTTAATGTGGGGGAGGAGG
GGAAGGGGAGGGGTCCGGACGATGAGGACGAGGAAAGCTATCGGGATTGG
GTGGGAGAGGTGGGGGCGAGGGTGGGGGAGAGGGAGCATGTCTTTTTGCC
CTTGGTTTGGGACGAGGCGTTGGAGAGGGAGGGGAGAGAAGGAGGGGGAG
GGGGAGGGGGAAAGAAGTGAATGGATGAATTCATCGACCAGGACATGATC
CCTTTCTTGCAGACCTTTAATGCGTGGAGAAAATACCAAGATGTGAGGCA
ATTGGTCTTGGCGAAGAGGTTCGCAGGGGTGGCGGCACAGCTGTTGAATG
CGCCCCGTGTTCGTCTCTATCAAGATTCAACCTTCTTAAAGCGCTGTGGC
GACGGTCCAACACTCTGGCACTCCGACTTGAACATGGCTCCCTTTCACAC
CAACGATGCCGTGACATTATGGTTACCCCTCACGCCCATCGCCCCGGAGG
AAGAAGGAGGGACGGGTCTGTTGTTCGCCTCCAGGTCGCACCGGGATTTT
GCCCTATCATTTTGGGAGGATGCCAAGGGGGGAGGGAGGCGAGACCTCGA
GGGGAGGTATGAGCTGAAGGGCTATGGGCGGATGGAGGTGGGGGATGGAA
GCTGGCATCATGGCTGGTGCTTGCATTCGTCGGGGCCAAACGACGAGGAC
GAGGACCGAGTGGCTCTCAGCCTTTGTTTCGTGGCGGACGGCGTGGAGAT
GCTTAATGTGGGGGAGGAGGGGAAGGGGAGGGGTCCGGACGATGAGGACG
AGGAAAGCTATCGGGATTGGGTGGGAGAGGTGGGGGCGAGGGTGGGGGAG
AGGGAGCATGTCTTTTTGCCCTTGGTTTGGGACGAGGCGTTGGAGAGGGA
GGGGAGAGAAGGAGGGGGAGGGGGAGGGGGAAAGAAGTGA
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Synonyms
Publications