jgi.p|Nanoce1779_2|670408, mRNA_4617 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|670408
Unique NamemRNA_4617
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length943
Alignment locationscaffold_9:209845..211207 -

Link to JBrowse

Properties
Property NameValue
TranscriptId670494
TrackFilteredModels2
ProteinId670408
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:209845..211207 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670408gene_4617Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670408mRNA_4617-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4617CDS_4617Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4617 ID=mRNA_4617|Name=jgi.p|Nanoce1779_2|670408|organism=Nannochloropsis oceanica|type=mRNA|length=943bp
ATGGTGTGGCAAGCCGACGTCTTCCTCCGCGTCGTCGGGGACGAAAACAA
AGAGAAACAAAAACACGTGGCCCCTCTCATTGTTTTCCCCGGTGGTCCTG
GCCTTGCTCATGACTACACTGAGACGCTCGAAGCCCTCGTGTATGCCGAT
CGGCGTGTCATCGCTTTTGATCCGGTTGGGACGGGACAATCCTCTCCTAT
CCTCCCTCCCTCCCTCCTCCCCTCCTCTGGCACAACGGAGGAGGAGCGAG
AGCAAATTTGGAGCGAGTTGATTCAAATTCAAGTCAAAGAGATCATCAGA
TTCTTGGAGATAGAAGGAGAGCACCACGTTTGGGCACACGGTGCGGGCTG
CCTCCCCGCCATACAGTACACGTCCTCCCTCCCTCCCTCGTCCTCGTCCT
CGTTATTTGTCAAGTCACTGACGCTTGCTAGCCCCTTTGTCTTCTCTCCG
GGTAAGACGAGTTTGCCTTCCTGGTACTCCGCCAATGACGCGGCGGTTCC
TCTTTGTGTGACAGAATCGGTTGCGGGGGGAGGAGGGAAGGAGGGCGCGA
AGGAGCAAAGGGTATTTTACAACAAGAGGCTGGAGGGGCTGCCGGCATTG
GCAGAGCTGGGAGGAGGGGGGGGGGTTCCGGTGTTTGTGAGTTACAGTGC
GGGAGAGGATGGAGCCCTAGGGTTGGACGAAGTGGCAGTGGGGAGGTTGA
GGAAACGTATCGAGGAGGGAGGGAAGGAGGGAAGGAGGGCGAGGGTGGTG
GTGAAGGCATTTGAGGGGCGGGTGCCGCACATTGATCAGCCGGAGCAGTA
CGTGGATTGGCTGGATGAAATGATGCAAATTGTCGAGAAGCCATCCACGC
CCGCAGCATGAGCGAAGGAAGACAAGAAGTGAAGGGGGTAGGGAGAGAGG
AAAGTGGGGAAGGGGGGAGGATGGAGCAAGAATGTGGCACACG
back to top

protein sequence of jgi.p|Nanoce1779_2|670408

>mRNA_4617-protein ID=mRNA_4617-protein|Name=jgi.p|Nanoce1779_2|670408|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MVWQADVFLRVVGDENKEKQKHVAPLIVFPGGPGLAHDYTETLEALVYAD
RRVIAFDPVGTGQSSPILPPSLLPSSGTTEEEREQIWSELIQIQVKEIIR
FLEIEGEHHVWAHGAGCLPAIQYTSSLPPSSSSSLFVKSLTLASPFVFSP
GKTSLPSWYSANDAAVPLCVTESVAGGGGKEGAKEQRVFYNKRLEGLPAL
AELGGGGGVPVFVSYSAGEDGALGLDEVAVGRLRKRIEEGGKEGRRARVV
VKAFEGRVPHIDQPEQYVDWLDEMMQIVEKPSTPAA*
back to top

mRNA from alignment at scaffold_9:209845..211207-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4617 ID=mRNA_4617|Name=jgi.p|Nanoce1779_2|670408|organism=Nannochloropsis oceanica|type=mRNA|length=1363bp|location=Sequence derived from alignment at scaffold_9:209845..211207- (Nannochloropsis oceanica)
ATGGTGTGGCAAGGTATGTGTATTCTTACTTGGTGTAGGATGTACGCGCC
AGAGTTGTAGAGACGGCAAGCCATGTGAGTAAACCCTTGAGCTGCAAACT
CCTTTCCAAACCGTCACACCTTTATTACTCTTCTCATTTTTTCCCCTTAC
AAAACAATCTTTTCAGCCCTACCCACGCTGGGCCTACGGTCTTCGGTTCA
ACGACGGGCTCATCCAAATTCCTCTGCCTGGCCTTGCTAAACCAGCCGAC
GTCTTCCTCCGCGTCGTCGGGGACGAAAACAAAGAGAAACAAAAACACGT
GGCCCCTCTCATTGTTTTCCCCGGTGGTCCTGGCCTTGCTCATGACTACA
CTGAGACGCTCGAAGCCCTCGTGTATGCCGATCGGCGTGTCATCGCTTTT
GATCCGGTTGGGACGGGACAATCCTCTCCTATCCTCCCTCCCTCCCTCCT
CCCCTCCTCTGGCACAACGGAGGAGGAGCGAGAGCAAATTTGGAGCGAGT
TGATTCAAATTCAAGTCAAAGAGATCATCAGATTCTTGGAGATAGAAGGA
GAGCACCACGTTTGGGCACACGGTGCGGGCTGCCTCCCCGCCATACAGTA
CACGTCCTCCCTCCCTCCCTCGTCCTCGTCCTCGTTATTTGTCAAGTCAC
TGACGCTTGCTAGCCCCTTTGTCTTCTCTCCGGGTAAGACGAGTTTGCCT
TCCTGGTACTCCGCCAATGACGCGGCGGTTCCTCTTTGTGTGACAGAATC
GGTTGCGGGGGGAGGAGGGAAGGAGGGCGCGAAGGAGCAAAGGGTATTTT
ACAACAAGAGGCTGGAGGGGCTGCCGGCATTGGCAGAGCTGGGAGGAGGG
GGGGGGGTTCCGGTGTTTGTGAGTTACAGTGCGGGAGAGGATGGAGCCCT
AGGGTTGGACGAAGTGGCAGTGGGGAGGTTGAGGAAACGTATCGAGGAGG
GAGGGAAGGAGGGAAGGAGGGCGAGGGTGGTGGTGAAGGCATTTGAGGGG
CGGGTGCCGCACATTGATCAGCCGGAGCAGTACGTGGATGTAAGTCGAGA
GAGGGAGGGAGGGAGAAAGGGAGGGAGGGAGGGAGGGAGGGAGGGATTGA
AAAATCAACAGAGAGACCGATTGTGTCTTATTTCTTTTCCCTCATGAGGA
TACGCGCTTGTATACACATATTTACACACACGTATGCACACACACTCACG
TATACATGCATATACCTCGTTGTACAGTGGCTGGATGAAATGATGCAAAT
TGTCGAGAAGCCATCCACGCCCGCAGCATGAGCGAAGGAAGACAAGAAGT
GAAGGGGGTAGGGAGAGAGGAAAGTGGGGAAGGGGGGAGGATGGAGCAAG
AATGTGGCACACG
back to top

Coding sequence (CDS) from alignment at scaffold_9:209845..211207-

>mRNA_4617 ID=mRNA_4617|Name=jgi.p|Nanoce1779_2|670408|organism=Nannochloropsis oceanica|type=CDS|length=2583bp|location=Sequence derived from alignment at scaffold_9:209845..211207- (Nannochloropsis oceanica)
TGGCTGGATGAAATGATGCAAATTGTCGAGAAGCCATCCACGCCCGCAGC
ATGACCGACGTCTTCCTCCGCGTCGTCGGGGACGAAAACAAAGAGAAACA
AAAACACGTGGCCCCTCTCATTGTTTTCCCCGGTGGTCCTGGCCTTGCTC
ATGACTACACTGAGACGCTCGAAGCCCTCGTGTATGCCGATCGGCGTGTC
ATCGCTTTTGATCCGGTTGGGACGGGACAATCCTCTCCTATCCTCCCTCC
CTCCCTCCTCCCCTCCTCTGGCACAACGGAGGAGGAGCGAGAGCAAATTT
GGAGCGAGTTGATTCAAATTCAAGTCAAAGAGATCATCAGATTCTTGGAG
ATAGAAGGAGAGCACCACGTTTGGGCACACGGTGCGGGCTGCCTCCCCGC
CATACAGTACACGTCCTCCCTCCCTCCCTCGTCCTCGTCCTCGTTATTTG
TCAAGTCACTGACGCTTGCTAGCCCCTTTGTCTTCTCTCCGGGTAAGACG
AGTTTGCCTTCCTGGTACTCCGCCAATGACGCGGCGGTTCCTCTTTGTGT
GACAGAATCGGTTGCGGGGGGAGGAGGGAAGGAGGGCGCGAAGGAGCAAA
GGGTATTTTACAACAAGAGGCTGGAGGGGCTGCCGGCATTGGCAGAGCTG
GGAGGAGGGGGGGGGGTTCCGGTGTTTGTGAGTTACAGTGCGGGAGAGGA
TGGAGCCCTAGGGTTGGACGAAGTGGCAGTGGGGAGGTTGAGGAAACGTA
TCGAGGAGGGAGGGAAGGAGGGAAGGAGGGCGAGGGTGGTGGTGAAGGCA
TTTGAGGGGCGGGTGCCGCACATTGATCAGCCGGAGCAGTACGTGGATAT
GGTGTGGCAAGTGGCTGGATGAAATGATGCAAATTGTCGAGAAGCCATCC
ACGCCCGCAGCATGACCGACGTCTTCCTCCGCGTCGTCGGGGACGAAAAC
AAAGAGAAACAAAAACACGTGGCCCCTCTCATTGTTTTCCCCGGTGGTCC
TGGCCTTGCTCATGACTACACTGAGACGCTCGAAGCCCTCGTGTATGCCG
ATCGGCGTGTCATCGCTTTTGATCCGGTTGGGACGGGACAATCCTCTCCT
ATCCTCCCTCCCTCCCTCCTCCCCTCCTCTGGCACAACGGAGGAGGAGCG
AGAGCAAATTTGGAGCGAGTTGATTCAAATTCAAGTCAAAGAGATCATCA
GATTCTTGGAGATAGAAGGAGAGCACCACGTTTGGGCACACGGTGCGGGC
TGCCTCCCCGCCATACAGTACACGTCCTCCCTCCCTCCCTCGTCCTCGTC
CTCGTTATTTGTCAAGTCACTGACGCTTGCTAGCCCCTTTGTCTTCTCTC
CGGGTAAGACGAGTTTGCCTTCCTGGTACTCCGCCAATGACGCGGCGGTT
CCTCTTTGTGTGACAGAATCGGTTGCGGGGGGAGGAGGGAAGGAGGGCGC
GAAGGAGCAAAGGGTATTTTACAACAAGAGGCTGGAGGGGCTGCCGGCAT
TGGCAGAGCTGGGAGGAGGGGGGGGGGTTCCGGTGTTTGTGAGTTACAGT
GCGGGAGAGGATGGAGCCCTAGGGTTGGACGAAGTGGCAGTGGGGAGGTT
GAGGAAACGTATCGAGGAGGGAGGGAAGGAGGGAAGGAGGGCGAGGGTGG
TGGTGAAGGCATTTGAGGGGCGGGTGCCGCACATTGATCAGCCGGAGCAG
TACGTGGATATGGTGTGGCAAGTGGCTGGATGAAATGATGCAAATTGTCG
AGAAGCCATCCACGCCCGCAGCATGACCGACGTCTTCCTCCGCGTCGTCG
GGGACGAAAACAAAGAGAAACAAAAACACGTGGCCCCTCTCATTGTTTTC
CCCGGTGGTCCTGGCCTTGCTCATGACTACACTGAGACGCTCGAAGCCCT
CGTGTATGCCGATCGGCGTGTCATCGCTTTTGATCCGGTTGGGACGGGAC
AATCCTCTCCTATCCTCCCTCCCTCCCTCCTCCCCTCCTCTGGCACAACG
GAGGAGGAGCGAGAGCAAATTTGGAGCGAGTTGATTCAAATTCAAGTCAA
AGAGATCATCAGATTCTTGGAGATAGAAGGAGAGCACCACGTTTGGGCAC
ACGGTGCGGGCTGCCTCCCCGCCATACAGTACACGTCCTCCCTCCCTCCC
TCGTCCTCGTCCTCGTTATTTGTCAAGTCACTGACGCTTGCTAGCCCCTT
TGTCTTCTCTCCGGGTAAGACGAGTTTGCCTTCCTGGTACTCCGCCAATG
ACGCGGCGGTTCCTCTTTGTGTGACAGAATCGGTTGCGGGGGGAGGAGGG
AAGGAGGGCGCGAAGGAGCAAAGGGTATTTTACAACAAGAGGCTGGAGGG
GCTGCCGGCATTGGCAGAGCTGGGAGGAGGGGGGGGGGTTCCGGTGTTTG
TGAGTTACAGTGCGGGAGAGGATGGAGCCCTAGGGTTGGACGAAGTGGCA
GTGGGGAGGTTGAGGAAACGTATCGAGGAGGGAGGGAAGGAGGGAAGGAG
GGCGAGGGTGGTGGTGAAGGCATTTGAGGGGCGGGTGCCGCACATTGATC
AGCCGGAGCAGTACGTGGATATGGTGTGGCAAG
back to top
Synonyms
Publications