jgi.p|Nanoce1779_2|587181, mRNA_4612 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|587181
Unique Name	mRNA_4612
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1177
Alignment location	scaffold_9:190613..192055 +

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Properties


Property Name	Value
TranscriptId	587267
Track	FilteredModels2
ProteinId	587181

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:190613..192055 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587181	gene_4612	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587181	mRNA_4612-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4612	CDS_4612	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:190613..192055+
coding sequence from alignment at scaffold_9:190613..192055+

mRNA sequence

>mRNA_4612 ID=mRNA_4612|Name=jgi.p|Nanoce1779_2|587181|organism=Nannochloropsis oceanica|type=mRNA|length=1177bp
ACAGGCCATCCAGGAGGTCGGCCCCTTGATCATGTCACAGCAGCCTTTCC
CCTCGCTCTGGCAGCGTTGCATGTCCTACTTCCTCTTCCCCTTCCTCGCC
CCCTTTATTTTCGCGCAATGGATCTGGCACTTACTCCCTTTTACCGACAA
GACCCGAGAAGGGAAGAAAAAACGACGTAGCAATGGCAACTATAGCATCA
GCAAGAACAGTAGCAACATCACCGACTTTCGTCCTCCTCCCCGCTGGCTT
TTGCGTCTGCTGGCGTTGCCCCTTGCCATGCTGAATCCACCGGATGCCCG
GCATTTGGAACACGTGATTGGGTGCTTGGATCGGAACGAGAAAGTCTTGT
TGGTCGGGAATCAGTGCTTATTGGGTCTAGACCAATTTCTGTTCATCACC
CTGCTTTACCTCCACACGGGGATCTTTGTCCGCCGTCTGCATGACGCCAT
GTTCGGGCGGGTGCCTATGGTCTCTTCCATATTGGCCTGGTCGGGAGGAG
TCCGCGCAACACGGAAGAATACGGAGACCATGATGCAGGCGGGAGAGCCT
CTTCTCTTCTTCCCGGGCGGTTTGGAGGAGAGTTTCAAACGGAGAGGGGA
GAAAAAGTACAGTCTGCAGTGGGGAGAGAGGCTTGGGTTCGTCATGCTGG
CAATCAAGCATGAATGTGAGGAAGAGGGGGGGGGGGGAGAGGGAGCGCAG
CTGGGAGGAAAGAGGGGAATGAGAGGGAAGATATGCCATATCAAAAGTTC
ACCTTTCTATCCTTTCGTCCCTTCTTCCCCTCTTTATATCCCTCCCTCTC
CCCCTCCTCAGACACCCTCATCCCCTTCTCCTCTCTCGGGATAGAGGATG
CCATCTGGCCCGTCCTCCACCTCCCCCTCCAACGCCTCCTCCGCCCTTTT
GGGACCCACCGACCCCCTACCTCCCTCCCCGTCCTCCTTCCTTTCAACAC
TCTTGAGAAGCAATATTATTTGTTCGGCGTGCCTCTGTCGACCAAGAGGT
TCAAGGGGGGCTACGAGAACACAGAGGCGTGCCACCAAACTTTTGATGTT
TTACGTACCCGTGTTTATCTGTTGATAGAAGAGGGAAAGAGACTGAGGGA
AGAGGATAGGGGGAGATATATCTTTGGGAGAGCATTTGAAATGTTAGGGT
GGGGGGTTTGGTGGAGAAAGGGGGAAG

protein sequence of jgi.p|Nanoce1779_2|587181

>mRNA_4612-protein ID=mRNA_4612-protein|Name=jgi.p|Nanoce1779_2|587181|organism=Nannochloropsis oceanica|type=polypeptide|length=271bp
MSQQPFPSLWQRCMSYFLFPFLAPFIFAQWIWHLLPFTDKTREGKKKRRS
NGNYSISKNSSNITDFRPPPRWLLRLLALPLAMLNPPDARHLEHVIGCLD
RNEKVLLVGNQCLLGLDQFLFITLLYLHTGIFVRRLHDAMFGRVPMVSSI
LAWSGGVRATRKNTETMMQAGEPLLFFPGGLEESFKRRGEKKYSLQWGER
LGFVMLAIKHECEEEGGGGEGAQLGGKRGMRGKICHIKSSPFYPFVPSSP
LYIPPSPPPQTPSSPSPLSG*

mRNA from alignment at scaffold_9:190613..192055+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4612 ID=mRNA_4612|Name=jgi.p|Nanoce1779_2|587181|organism=Nannochloropsis oceanica|type=mRNA|length=1443bp|location=Sequence derived from alignment at scaffold_9:190613..192055+ (Nannochloropsis oceanica)
ACAGGCCATCCAGGAGGTCGGCCCCTTGATCATGTCACAGCAGCCTTTCC
CCTCGCTCTGGCAGCGTTGCATGTCCTACTTCCTCTTCCCCTTCCTCGCC
CCCTTTATTTTCGCGCAATGGATCTGGCACTTACTCCCTTTTACCGACAA
GACCCGAGAAGGGAAGAAAAAACGACGTAGCAATGGCAACTATAGCATCA
GCAAGAACAGTAGCAACATCACCGACTTTCGTCCTCCTCCCCGCTGGCTT
TTGCGTCTGCTGGCGTTGCCCCTTGCCATGCTGAATCCACCGGATGCCCG
GCATTTGGAACACGTGATTGGGTGCTTGGATCGGAACGAGAAAGTCTTGT
TGGTCGGGAATCAGGTGAGTGGTTAGGCAGGGGAGAAGGGATTAAGGGAA
GGAAAGGAAGGGAGAGAGTATTTCGAACTCCATAGCTAATCTCTTCCTTT
TCTACCCCCCTGCCTCCCATAATTTTTAGTGCTTATTGGGTCTAGACCAA
TTTCTGTTCATCACCCTGCTTTACCTCCACACGGGGATCTTTGTCCGCCG
TCTGCATGACGCCATGTTCGGGCGGGTGCCTATGGTCTCTTCCATATTGG
CCTGGTCGGGAGGAGTCCGCGCAACACGGAAGAATACGGAGACCATGATG
CGTACGTCCTCGTCCTCGTCCTCTCTCCCGAGCGTCTTGGGCGTGTATTT
AATATCGTCCACTACCGCCCTCTCACGTATCCCTGTCCCTGCTCCACACA
CAAGCACCACACTCACATAACCCCACCACACATACAAAAATAACCATTCC
AGAGGCGGGAGAGCCTCTTCTCTTCTTCCCGGGCGGTTTGGAGGAGAGTT
TCAAACGGAGAGGGGAGAAAAAGTACAGTCTGCAGTGGGGAGAGAGGCTT
GGGTTCGTCATGCTGGCAATCAAGCATGAATGTGAGGAAGAGGGGGGGGG
GGGAGAGGGAGCGCAGCTGGGAGGAAAGAGGGGAATGAGAGGGAAGATAT
GCCATATCAAAAGTTCACCTTTCTATCCTTTCGTCCCTTCTTCCCCTCTT
TATATCCCTCCCTCTCCCCCTCCTCAGACACCCTCATCCCCTTCTCCTCT
CTCGGGATAGAGGATGCCATCTGGCCCGTCCTCCACCTCCCCCTCCAACG
CCTCCTCCGCCCTTTTGGGACCCACCGACCCCCTACCTCCCTCCCCGTCC
TCCTTCCTTTCAACACTCTTGAGAAGCAATATTATTTGTTCGGCGTGCCT
CTGTCGACCAAGAGGTTCAAGGGGGGCTACGAGAACACAGAGGCGTGCCA
CCAAACTTTTGATGTTTTACGTACCCGTGTTTATCTGTTGATAGAAGAGG
GAAAGAGACTGAGGGAAGAGGATAGGGGGAGATATATCTTTGGGAGAGCA
TTTGAAATGTTAGGGTGGGGGGTTTGGTGGAGAAAGGGGGAAG

Coding sequence (CDS) from alignment at scaffold_9:190613..192055+

>mRNA_4612 ID=mRNA_4612|Name=jgi.p|Nanoce1779_2|587181|organism=Nannochloropsis oceanica|type=CDS|length=2439bp|location=Sequence derived from alignment at scaffold_9:190613..192055+ (Nannochloropsis oceanica)
ATGTCACAGCAGCCTTTCCCCTCGCTCTGGCAGCGTTGCATGTCCTACTT
CCTCTTCCCCTTCCTCGCCCCCTTTATTTTCGCGCAATGGATCTGGCACT
TACTCCCTTTTACCGACAAGACCCGAGAAGGGAAGAAAAAACGACGTAGC
AATGGCAACTATAGCATCAGCAAGAACAGTAGCAACATCACCGACTTTCG
TCCTCCTCCCCGCTGGCTTTTGCGTCTGCTGGCGTTGCCCCTTGCCATGC
TGAATCCACCGGATGCCCGGCATTTGGAACACGTGATTGGGTGCTTGGAT
CGGAACGAGAAAGTCTTGTTGGTCGGGAATCAGTGCTTATTGGGTCTAGA
CCAATTTCTGTTCATCACCCTGCTTTACCTCCACACGGGGATCTTTGTCC
GCCGTCTGCATGACGCCATGTTCGGGCGGGTGCCTATGGTCTCTTCCATA
TTGGCCTGGTCGGGAGGAGTCCGCGCAACACGGAAGAATACGGAGACCAT
GATGCAGGCGGGAGAGCCTCTTCTCTTCTTCCCGGGCGGTTTGGAGGAGA
GTTTCAAACGGAGAGGGGAGAAAAAGTACAGTCTGCAGTGGGGAGAGAGG
CTTGGGTTCGTCATGCTGGCAATCAAGCATGAATGTGAGGAAGAGGGGGG
GGGGGGAGAGGGAGCGCAGCTGGGAGGAAAGAGGGGAATGAGAGGGAAGA
TATGCCATATCAAAAGTTCACCTTTCTATCCTTTCGTCCCTTCTTCCCCT
CTTTATATCCCTCCCTCTCCCCCTCCTCAGACACCCTCATCCCCTTCTCC
TCTCTCGGGATAGATGTCACAGCAGCCTTTCCCCTCGCTCTGGCAGCGTT
GCATGTCCTACTTCCTCTTCCCCTTCCTCGCCCCCTTTATTTTCGCGCAA
TGGATCTGGCACTTACTCCCTTTTACCGACAAGACCCGAGAAGGGAAGAA
AAAACGACGTAGCAATGGCAACTATAGCATCAGCAAGAACAGTAGCAACA
TCACCGACTTTCGTCCTCCTCCCCGCTGGCTTTTGCGTCTGCTGGCGTTG
CCCCTTGCCATGCTGAATCCACCGGATGCCCGGCATTTGGAACACGTGAT
TGGGTGCTTGGATCGGAACGAGAAAGTCTTGTTGGTCGGGAATCAGTGCT
TATTGGGTCTAGACCAATTTCTGTTCATCACCCTGCTTTACCTCCACACG
GGGATCTTTGTCCGCCGTCTGCATGACGCCATGTTCGGGCGGGTGCCTAT
GGTCTCTTCCATATTGGCCTGGTCGGGAGGAGTCCGCGCAACACGGAAGA
ATACGGAGACCATGATGCAGGCGGGAGAGCCTCTTCTCTTCTTCCCGGGC
GGTTTGGAGGAGAGTTTCAAACGGAGAGGGGAGAAAAAGTACAGTCTGCA
GTGGGGAGAGAGGCTTGGGTTCGTCATGCTGGCAATCAAGCATGAATGTG
AGGAAGAGGGGGGGGGGGGAGAGGGAGCGCAGCTGGGAGGAAAGAGGGGA
ATGAGAGGGAAGATATGCCATATCAAAAGTTCACCTTTCTATCCTTTCGT
CCCTTCTTCCCCTCTTTATATCCCTCCCTCTCCCCCTCCTCAGACACCCT
CATCCCCTTCTCCTCTCTCGGGATAGATGTCACAGCAGCCTTTCCCCTCG
CTCTGGCAGCGTTGCATGTCCTACTTCCTCTTCCCCTTCCTCGCCCCCTT
TATTTTCGCGCAATGGATCTGGCACTTACTCCCTTTTACCGACAAGACCC
GAGAAGGGAAGAAAAAACGACGTAGCAATGGCAACTATAGCATCAGCAAG
AACAGTAGCAACATCACCGACTTTCGTCCTCCTCCCCGCTGGCTTTTGCG
TCTGCTGGCGTTGCCCCTTGCCATGCTGAATCCACCGGATGCCCGGCATT
TGGAACACGTGATTGGGTGCTTGGATCGGAACGAGAAAGTCTTGTTGGTC
GGGAATCAGTGCTTATTGGGTCTAGACCAATTTCTGTTCATCACCCTGCT
TTACCTCCACACGGGGATCTTTGTCCGCCGTCTGCATGACGCCATGTTCG
GGCGGGTGCCTATGGTCTCTTCCATATTGGCCTGGTCGGGAGGAGTCCGC
GCAACACGGAAGAATACGGAGACCATGATGCAGGCGGGAGAGCCTCTTCT
CTTCTTCCCGGGCGGTTTGGAGGAGAGTTTCAAACGGAGAGGGGAGAAAA
AGTACAGTCTGCAGTGGGGAGAGAGGCTTGGGTTCGTCATGCTGGCAATC
AAGCATGAATGTGAGGAAGAGGGGGGGGGGGGAGAGGGAGCGCAGCTGGG
AGGAAAGAGGGGAATGAGAGGGAAGATATGCCATATCAAAAGTTCACCTT
TCTATCCTTTCGTCCCTTCTTCCCCTCTTTATATCCCTCCCTCTCCCCCT
CCTCAGACACCCTCATCCCCTTCTCCTCTCTCGGGATAG

Synonyms

Publications