jgi.p|Nanoce1779_2|587166, mRNA_4610 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587166
Unique NamemRNA_4610
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length510
Alignment locationscaffold_9:179734..180890 +

Link to JBrowse

Properties
Property NameValue
TranscriptId587252
TrackFilteredModels2
ProteinId587166
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:179734..180890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587166gene_4610Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587166mRNA_4610-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4610CDS_4610Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4610 ID=mRNA_4610|Name=jgi.p|Nanoce1779_2|587166|organism=Nannochloropsis oceanica|type=mRNA|length=510bp
CAGAGCCCCCCCTCCACCACCACCACATCACAACCATGCTTTCTCGGCTA
GCCCTCAACCTCCGCCCGACTTTCCTCACCAGCGTAAGCACCGCCGCCCG
TGCTTTCAGCAGCACCACACCCACCGTCCACCAGGGGACAGTACGCGCGT
TCGACTCTCGTCGGGGCTACGGCTTTATCACGCCCGAGGACGGCTCGGAC
GACGTGTTTCTGCACCAGACTCAGATTAGGCGTGTGGGCTTCAGGTTTGT
CCAGGCGGGCGAGGCGGTGGAGTTTCAAATGGTACAGGGCGACAAGGGCC
GCAAGGCGATAAATGTAACAGGCCCAGGTGGCGAGGTGTTGCCTCCTCGC
AGCAATTCGGACCGACCCTACACGCCCCGGGGAGAGGGGGAGTCGTCTGG
TCCGCGGGACTAAGTAAGAGGGGAGGGAGGGGGGGGGGTTGAGGGAAAGA
GGCATGACGGAGGGAAACAAGAAAGTGGTGGGGAGTAGACTTGTGGTGTG
AAGAGGGGGA
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protein sequence of jgi.p|Nanoce1779_2|587166

>mRNA_4610-protein ID=mRNA_4610-protein|Name=jgi.p|Nanoce1779_2|587166|organism=Nannochloropsis oceanica|type=polypeptide|length=126bp
MLSRLALNLRPTFLTSVSTAARAFSSTTPTVHQGTVRAFDSRRGYGFITP
EDGSDDVFLHQTQIRRVGFRFVQAGEAVEFQMVQGDKGRKAINVTGPGGE
VLPPRSNSDRPYTPRGEGESSGPRD*
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mRNA from alignment at scaffold_9:179734..180890+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4610 ID=mRNA_4610|Name=jgi.p|Nanoce1779_2|587166|organism=Nannochloropsis oceanica|type=mRNA|length=1157bp|location=Sequence derived from alignment at scaffold_9:179734..180890+ (Nannochloropsis oceanica)
CAGAGCCCCCCCTCCACCACCACCACATCACAACCATGCTTTCTCGGCTA
GCCCTCAACCTCCGCCCGACTTTCCTCACCAGCGTAAGCACCGCCGCCCG
TGCTTTCAGCAGCACCACACCCACCGTCCACCAGGGGACAGTACGCGCGT
TCGACTCTCGTCGGGTAAGTTATGGTCGTACAGAAGTATCGGGGCGATGG
GTATGTCGCCTCTGGATAGGCAAAAGTATGTGGGTGGTGTGGTTGTAAAA
TGATGGCCCAGTTGGAGCGTGGAACAGACCAAATATCTTGAGTGGCGACT
CACTCTCCCACTCTTCCTTTCTTTTTGCCTCTGCACACACTGCCACTCTC
ACAGGGCTACGGCTTTATCACGCCCGAGGACGGCTCGGACGACGTGTTTC
TGCACCAGACTCAGATTAGGCGTGTGGGCTTCAGGTTTGTCCAGGTAAGA
GGGGAGGGAGGGCGGGAGGGAGGGCGGGAGGGTGTGTGTGGTGACGATGA
TGCAGTGTTGGGCGCTCGAGAAGCTCGGAATAAAGAAGAAAATGGGCGGA
GACAGTGAAGAGTGTAGAGCGGTACATGCAAGTGGGATATATATCTTGTG
TGAGGGAAGCACGGGGATGCTAAGAGGGCCGGAGGGAAAGTAAGGATGGA
GTGATGCCCACGGTGGCCGTTGGCCTTTGGCTCTTCACCCCCCCCTCTCT
CATTTCCTACAATGGTTGCATGATATGAATGTCTGGCGGTAATGGTGTGC
TTGAGCGATGTATTATACCCGAATGGTCAGTACTCACCCACCTCGTCCCT
CTCTCTCCCTCCCTCCCTCCCTCCCTCCGTCCCTCCCCCCCTCCCTCCCT
CCCTCCCTCCGTGCCTTCCTCCCTCCCTCCATTTTCTCCCATTCCACACA
GGCGGGCGAGGCGGTGGAGTTTCAAATGGTACAGGGCGACAAGGGCCGCA
AGGCGATAAATGTAACAGGCCCAGGTGGCGAGGTGTTGCCTCCTCGCAGC
AATTCGGACCGACCCTACACGCCCCGGGGAGAGGGGGAGTCGTCTGGTCC
GCGGGACTAAGTAAGAGGGGAGGGAGGGGGGGGGGTTGAGGGAAAGAGGC
ATGACGGAGGGAAACAAGAAAGTGGTGGGGAGTAGACTTGTGGTGTGAAG
AGGGGGA
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Coding sequence (CDS) from alignment at scaffold_9:179734..180890+

>mRNA_4610 ID=mRNA_4610|Name=jgi.p|Nanoce1779_2|587166|organism=Nannochloropsis oceanica|type=CDS|length=1134bp|location=Sequence derived from alignment at scaffold_9:179734..180890+ (Nannochloropsis oceanica)
ATGCTTTCTCGGCTAGCCCTCAACCTCCGCCCGACTTTCCTCACCAGCGT
AAGCACCGCCGCCCGTGCTTTCAGCAGCACCACACCCACCGTCCACCAGG
GGACAGTACGCGCGTTCGACTCTCGTCGGGGCTACGGCTTTATCACGCCC
GAGGACGGCTCGGACGACGTGTTTCTGCACCAGACTCAGATTAGGCGTGT
GGGCTTCAGGTTTGTCCAGGCGGGCGAGGCGGTGGAGTTTCAAATGGTAC
AGGGCGACAAGGGCCGCAAGGCGATAAATGTAACAGGCCCAGGTGGCGAG
GTGTTGCCTCCTCGCAGCAATTCGGACCGACCCTACACGCCCCGGGGAGA
GGGGGAGTCGTCTGGTCCGCGGGACTAAATGCTTTCTCGGCTAGCCCTCA
ACCTCCGCCCGACTTTCCTCACCAGCGTAAGCACCGCCGCCCGTGCTTTC
AGCAGCACCACACCCACCGTCCACCAGGGGACAGTACGCGCGTTCGACTC
TCGTCGGGGCTACGGCTTTATCACGCCCGAGGACGGCTCGGACGACGTGT
TTCTGCACCAGACTCAGATTAGGCGTGTGGGCTTCAGGTTTGTCCAGGCG
GGCGAGGCGGTGGAGTTTCAAATGGTACAGGGCGACAAGGGCCGCAAGGC
GATAAATGTAACAGGCCCAGGTGGCGAGGTGTTGCCTCCTCGCAGCAATT
CGGACCGACCCTACACGCCCCGGGGAGAGGGGGAGTCGTCTGGTCCGCGG
GACTAAATGCTTTCTCGGCTAGCCCTCAACCTCCGCCCGACTTTCCTCAC
CAGCGTAAGCACCGCCGCCCGTGCTTTCAGCAGCACCACACCCACCGTCC
ACCAGGGGACAGTACGCGCGTTCGACTCTCGTCGGGGCTACGGCTTTATC
ACGCCCGAGGACGGCTCGGACGACGTGTTTCTGCACCAGACTCAGATTAG
GCGTGTGGGCTTCAGGTTTGTCCAGGCGGGCGAGGCGGTGGAGTTTCAAA
TGGTACAGGGCGACAAGGGCCGCAAGGCGATAAATGTAACAGGCCCAGGT
GGCGAGGTGTTGCCTCCTCGCAGCAATTCGGACCGACCCTACACGCCCCG
GGGAGAGGGGGAGTCGTCTGGTCCGCGGGACTAA
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Synonyms
Publications