jgi.p|Nanoce1779_2|657991, mRNA_461 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|657991
Unique NamemRNA_461
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1032
Alignment locationscaffold_3:1124891..1125922 -

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Properties
Property NameValue
TranscriptId658077
TrackFilteredModels2
ProteinId657991
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1124891..1125922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|657991gene_461Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_461CDS_461Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|657991mRNA_461-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_461 ID=mRNA_461|Name=jgi.p|Nanoce1779_2|657991|organism=Nannochloropsis oceanica|type=mRNA|length=1032bp
GAGATACGTTTGAGGAACGAAACCCGAGCTGTTGCGTGTACGTGTCGTGT
TCGACAGCACTTGCACTTCTCGTGTTCTCCAACTTCCTCGTGCTTACTCA
TTAGCACTTGCCTGCATTGCAGGGATAAATGTCCTGGATCCAGGCCTCAA
CAAAGGGGACGGCTTATAGTAGTGTCTGCTTTCTACGTGCCGCCATGCGA
CCGGCGGCTCATCACCGCCCATCCGTCCAACGCACCGACCCTCAACTATT
CGAGCACCCATGGACATAAGATAAGTTCTTTTGGCTCGGACAAGTCATAT
TGTACCAGGTTATCTCCGCATTCAGCACCCGGAAAATCTCTGCAGTCTGC
CAACAGGCCCATGCTCATGCTATCCGTTGACCAAGTTCGAAATTGCGTCC
AGGCTGACCACCACCAGCAGCAGGAGCAGGAGAAGGGGGGTGAAGGAAGG
AGAGGAGAAGGGGTAGGAGGAGGGGGAGATGTGGGAGCAGGAGGAGGAGC
GGGAGGGCGGGGAGGTGTGGGCGCAGGAACAGGAGCGGGAGGGAGGGGAT
GGAGGGGAGGACGGATAGGAAGAAGAGGATGGATGGAAGGGGAAGCAGCA
GCAGTAGGAGGAGTGGGAGGAGGAAAAGGAGGAGGAAGAGGAGGAGGGGG
AGAACGAGGGAGAGCAGGAACAGGAGGAGTGGGAACAGGAACAGGAACAG
GAGCAGAAGGAGGAAGAGGAGGAGAAGGAGGAGAAGGAAGAAGAAGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGCAGAAGGAGGAGGAGCAGCAGCAGCAGCAG
CAGCAGGAGGAGGAGCAGCAGCAGCGACAGCAATTGTAGCGGATTCACTA
GGAGGAGGAAGTGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AAGAGGAGGAGGGAGAGAAGGAAGAGGAGTAG
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protein sequence of jgi.p|Nanoce1779_2|657991

>mRNA_461-protein ID=mRNA_461-protein|Name=jgi.p|Nanoce1779_2|657991|organism=Nannochloropsis oceanica|type=polypeptide|length=344bp
EIRLRNETRAVACTCRVRQHLHFSCSPTSSCLLISTCLHCRDKCPGSRPQ
QRGRLIVVSAFYVPPCDRRLITAHPSNAPTLNYSSTHGHKISSFGSDKSY
CTRLSPHSAPGKSLQSANRPMLMLSVDQVRNCVQADHHQQQEQEKGGEGR
RGEGVGGGGDVGAGGGAGGRGGVGAGTGAGGRGWRGGRIGRRGWMEGEAA
AVGGVGGGKGGGRGGGGERGRAGTGGVGTGTGTGAEGGRGGEGGEGRRRG
GGGGGGGGGGGGGGGGGGGGGGGAEGGGAAAAAAAGGGAAAATAIVADSL
GGGSGGGEGGGGGGGGGEEEEKEEEEEEEEEEEEEEEGEKEEE*
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mRNA from alignment at scaffold_3:1124891..1125922-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_461 ID=mRNA_461|Name=jgi.p|Nanoce1779_2|657991|organism=Nannochloropsis oceanica|type=mRNA|length=1032bp|location=Sequence derived from alignment at scaffold_3:1124891..1125922- (Nannochloropsis oceanica)
GAGATACGTTTGAGGAACGAAACCCGAGCTGTTGCGTGTACGTGTCGTGT
TCGACAGCACTTGCACTTCTCGTGTTCTCCAACTTCCTCGTGCTTACTCA
TTAGCACTTGCCTGCATTGCAGGGATAAATGTCCTGGATCCAGGCCTCAA
CAAAGGGGACGGCTTATAGTAGTGTCTGCTTTCTACGTGCCGCCATGCGA
CCGGCGGCTCATCACCGCCCATCCGTCCAACGCACCGACCCTCAACTATT
CGAGCACCCATGGACATAAGATAAGTTCTTTTGGCTCGGACAAGTCATAT
TGTACCAGGTTATCTCCGCATTCAGCACCCGGAAAATCTCTGCAGTCTGC
CAACAGGCCCATGCTCATGCTATCCGTTGACCAAGTTCGAAATTGCGTCC
AGGCTGACCACCACCAGCAGCAGGAGCAGGAGAAGGGGGGTGAAGGAAGG
AGAGGAGAAGGGGTAGGAGGAGGGGGAGATGTGGGAGCAGGAGGAGGAGC
GGGAGGGCGGGGAGGTGTGGGCGCAGGAACAGGAGCGGGAGGGAGGGGAT
GGAGGGGAGGACGGATAGGAAGAAGAGGATGGATGGAAGGGGAAGCAGCA
GCAGTAGGAGGAGTGGGAGGAGGAAAAGGAGGAGGAAGAGGAGGAGGGGG
AGAACGAGGGAGAGCAGGAACAGGAGGAGTGGGAACAGGAACAGGAACAG
GAGCAGAAGGAGGAAGAGGAGGAGAAGGAGGAGAAGGAAGAAGAAGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGCAGAAGGAGGAGGAGCAGCAGCAGCAGCAG
CAGCAGGAGGAGGAGCAGCAGCAGCGACAGCAATTGTAGCGGATTCACTA
GGAGGAGGAAGTGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AAGAGGAGGAGGGAGAGAAGGAAGAGGAGTAG
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Coding sequence (CDS) from alignment at scaffold_3:1124891..1125922-

>mRNA_461 ID=mRNA_461|Name=jgi.p|Nanoce1779_2|657991|organism=Nannochloropsis oceanica|type=CDS|length=1032bp|location=Sequence derived from alignment at scaffold_3:1124891..1125922- (Nannochloropsis oceanica)
GAGATACGTTTGAGGAACGAAACCCGAGCTGTTGCGTGTACGTGTCGTGT
TCGACAGCACTTGCACTTCTCGTGTTCTCCAACTTCCTCGTGCTTACTCA
TTAGCACTTGCCTGCATTGCAGGGATAAATGTCCTGGATCCAGGCCTCAA
CAAAGGGGACGGCTTATAGTAGTGTCTGCTTTCTACGTGCCGCCATGCGA
CCGGCGGCTCATCACCGCCCATCCGTCCAACGCACCGACCCTCAACTATT
CGAGCACCCATGGACATAAGATAAGTTCTTTTGGCTCGGACAAGTCATAT
TGTACCAGGTTATCTCCGCATTCAGCACCCGGAAAATCTCTGCAGTCTGC
CAACAGGCCCATGCTCATGCTATCCGTTGACCAAGTTCGAAATTGCGTCC
AGGCTGACCACCACCAGCAGCAGGAGCAGGAGAAGGGGGGTGAAGGAAGG
AGAGGAGAAGGGGTAGGAGGAGGGGGAGATGTGGGAGCAGGAGGAGGAGC
GGGAGGGCGGGGAGGTGTGGGCGCAGGAACAGGAGCGGGAGGGAGGGGAT
GGAGGGGAGGACGGATAGGAAGAAGAGGATGGATGGAAGGGGAAGCAGCA
GCAGTAGGAGGAGTGGGAGGAGGAAAAGGAGGAGGAAGAGGAGGAGGGGG
AGAACGAGGGAGAGCAGGAACAGGAGGAGTGGGAACAGGAACAGGAACAG
GAGCAGAAGGAGGAAGAGGAGGAGAAGGAGGAGAAGGAAGAAGAAGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGCAGAAGGAGGAGGAGCAGCAGCAGCAGCAG
CAGCAGGAGGAGGAGCAGCAGCAGCGACAGCAATTGTAGCGGATTCACTA
GGAGGAGGAAGTGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AAGAGGAGGAGGGAGAGAAGGAAGAGGAGTAG
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Synonyms
Publications