jgi.p|Nanoce1779_2|437309, mRNA_4607 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|437309
Unique NamemRNA_4607
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length879
Alignment locationscaffold_9:174268..175146 -

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Properties
Property NameValue
TranscriptId437395
TrackFilteredModels2
ProteinId437309
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:174268..175146 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|437309gene_4607Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|437309mRNA_4607-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4607CDS_4607Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4607 ID=mRNA_4607|Name=jgi.p|Nanoce1779_2|437309|organism=Nannochloropsis oceanica|type=mRNA|length=879bp
GATGCACGAGAGAGGGGAAGGGGGGGAGGGAAGGAGGGAGGGAGGGGGGG
ACGACCACAATGATACAATGGGAATCAGTCGCCTGTACTGCTGCTTTTTC
ACCGTGCTTTCTCCCGTCCCTTCCTCCCTCCCTTCCTCCCTCCCTCTCTC
CCCCTCTTCTTGTCCATCTCCGTGCTATCCCTCTCTCCTCTCCTTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCATACCTTCTTCACTCGC
CTCTCGAATTTTCCAAATTCAATCATGTCTACACTCGCACCCTCTCCCTC
CTTCTCCTCGCCCACCAATCCCCCCTCTATTCCCCCCCTTCCTGCCCTCA
ACGCCACGGGCAGGATATGCAATTGCGCCAAGGCCGCCTCGTCCTCCCTC
CCTCCCTCCTCCTCCTCTGCATTTTCAACCACTACCTCCCCCTCCCCAGC
TCCCTCCTCCTCGCCCTCCTCCTCTTCCTCGGACAAAGCGCACATCCCAC
CCTCTGTCCTTTCCGCCCTCCGTCTCCGTCTACGAGCTGAGGGGGAGGGG
GAGGAGGAGGAGGCAGCGTTTGCACTCCTTCCCTTCCTCGACGCTGCGGC
TCTTGCCGCCCCGACAGCGGCATGAGGATATAAGTTGCTGCTACTACTGC
CGCCGCCGCTGCTCCTCCTGCTGCTGCCACTGCCGCTGCTGCTATTGTCG
CTGCTGGGGCAGGAAAAGGAGGAGGAAGGGAGGGAGGAAGGAGAAGAGGA
GGGGGCGTGGGGAGGGGGGAGGAGGTGGCTGTGTGGATGCCTGCCGCTTT
CTATTGTCTCCTTGAGCTTCTGCTCTCTGTGTAGGAGAGAGGGGGGGAGG
AAGGGAAGGAGGGAGAGAGGGAGGAACAG
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protein sequence of jgi.p|Nanoce1779_2|437309

>mRNA_4607-protein ID=mRNA_4607-protein|Name=jgi.p|Nanoce1779_2|437309|organism=Nannochloropsis oceanica|type=polypeptide|length=252bp
MIQWESVACTAAFSPCFLPSLPPSLPPSLSPPLLVHLRAIPLSSPSLPPS
LPPSLPSSIPSSLASRIFQIQSCLHSHPLPPSPRPPIPPLFPPFLPSTPR
AGYAIAPRPPRPPSLPPPPLHFQPLPPPPQLPPPRPPPLPRTKRTSHPLS
FPPSVSVYELRGRGRRRRQRLHSFPSSTLRLLPPRQRHEDISCCYYCRRR
CSSCCCHCRCCYCRCWGRKRRRKGGRKEKRRGRGEGGGGGCVDACRFLLS
P*
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mRNA from alignment at scaffold_9:174268..175146-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4607 ID=mRNA_4607|Name=jgi.p|Nanoce1779_2|437309|organism=Nannochloropsis oceanica|type=mRNA|length=879bp|location=Sequence derived from alignment at scaffold_9:174268..175146- (Nannochloropsis oceanica)
GATGCACGAGAGAGGGGAAGGGGGGGAGGGAAGGAGGGAGGGAGGGGGGG
ACGACCACAATGATACAATGGGAATCAGTCGCCTGTACTGCTGCTTTTTC
ACCGTGCTTTCTCCCGTCCCTTCCTCCCTCCCTTCCTCCCTCCCTCTCTC
CCCCTCTTCTTGTCCATCTCCGTGCTATCCCTCTCTCCTCTCCTTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCATACCTTCTTCACTCGC
CTCTCGAATTTTCCAAATTCAATCATGTCTACACTCGCACCCTCTCCCTC
CTTCTCCTCGCCCACCAATCCCCCCTCTATTCCCCCCCTTCCTGCCCTCA
ACGCCACGGGCAGGATATGCAATTGCGCCAAGGCCGCCTCGTCCTCCCTC
CCTCCCTCCTCCTCCTCTGCATTTTCAACCACTACCTCCCCCTCCCCAGC
TCCCTCCTCCTCGCCCTCCTCCTCTTCCTCGGACAAAGCGCACATCCCAC
CCTCTGTCCTTTCCGCCCTCCGTCTCCGTCTACGAGCTGAGGGGGAGGGG
GAGGAGGAGGAGGCAGCGTTTGCACTCCTTCCCTTCCTCGACGCTGCGGC
TCTTGCCGCCCCGACAGCGGCATGAGGATATAAGTTGCTGCTACTACTGC
CGCCGCCGCTGCTCCTCCTGCTGCTGCCACTGCCGCTGCTGCTATTGTCG
CTGCTGGGGCAGGAAAAGGAGGAGGAAGGGAGGGAGGAAGGAGAAGAGGA
GGGGGCGTGGGGAGGGGGGAGGAGGTGGCTGTGTGGATGCCTGCCGCTTT
CTATTGTCTCCTTGAGCTTCTGCTCTCTGTGTAGGAGAGAGGGGGGGAGG
AAGGGAAGGAGGGAGAGAGGGAGGAACAG
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Coding sequence (CDS) from alignment at scaffold_9:174268..175146-

>mRNA_4607 ID=mRNA_4607|Name=jgi.p|Nanoce1779_2|437309|organism=Nannochloropsis oceanica|type=CDS|length=756bp|location=Sequence derived from alignment at scaffold_9:174268..175146- (Nannochloropsis oceanica)
ATGATACAATGGGAATCAGTCGCCTGTACTGCTGCTTTTTCACCGTGCTT
TCTCCCGTCCCTTCCTCCCTCCCTTCCTCCCTCCCTCTCTCCCCCTCTTC
TTGTCCATCTCCGTGCTATCCCTCTCTCCTCTCCTTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTTCCTCCATACCTTCTTCACTCGCCTCTCGAAT
TTTCCAAATTCAATCATGTCTACACTCGCACCCTCTCCCTCCTTCTCCTC
GCCCACCAATCCCCCCTCTATTCCCCCCCTTCCTGCCCTCAACGCCACGG
GCAGGATATGCAATTGCGCCAAGGCCGCCTCGTCCTCCCTCCCTCCCTCC
TCCTCCTCTGCATTTTCAACCACTACCTCCCCCTCCCCAGCTCCCTCCTC
CTCGCCCTCCTCCTCTTCCTCGGACAAAGCGCACATCCCACCCTCTGTCC
TTTCCGCCCTCCGTCTCCGTCTACGAGCTGAGGGGGAGGGGGAGGAGGAG
GAGGCAGCGTTTGCACTCCTTCCCTTCCTCGACGCTGCGGCTCTTGCCGC
CCCGACAGCGGCATGAGGATATAAGTTGCTGCTACTACTGCCGCCGCCGC
TGCTCCTCCTGCTGCTGCCACTGCCGCTGCTGCTATTGTCGCTGCTGGGG
CAGGAAAAGGAGGAGGAAGGGAGGGAGGAAGGAGAAGAGGAGGGGGCGTG
GGGAGGGGGGAGGAGGTGGCTGTGTGGATGCCTGCCGCTTTCTATTGTCT
CCTTGA
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Synonyms
Publications