jgi.p|Nanoce1779_2|587128, mRNA_4602 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|587128
Unique Name	mRNA_4602
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2248
Alignment location	scaffold_9:154093..156911 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	587214
Track	FilteredModels2
ProteinId	587128

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:154093..156911 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587128	gene_4602	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587128	mRNA_4602-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4602	CDS_4602	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:154093..156911+
coding sequence from alignment at scaffold_9:154093..156911+

mRNA sequence

>mRNA_4602 ID=mRNA_4602|Name=jgi.p|Nanoce1779_2|587128|organism=Nannochloropsis oceanica|type=mRNA|length=2248bp
AGTATACAGTCTCGACTCCTCACCATGACGAACATATGCATCGGTCCCTT
CTGTGTGCCTCTCGGCGCGCTTATCCCTTTCCTTTTCGTCCTCTTCCGGG
TGGCATTATCTTGGTTTAAAGATCGTCTAGGTGCCGGTTCCCCAGAGGAG
CAAGCCTTGGCCGCCATGCCCCGCCCGCCCGCGGTGAATAAGCGCACGTG
GACTGATTCCTCCATCGTCCACATCACTGACGTCGCCCACTTGGCCAAGA
TCCGGGCACAGGCTAGAGAGGCGGGCGTACCGGTGGTGATTGATTTCACA
GCCACCTGGTGTGGGCCATGCCGGACGATTGCGCCTGTCTTTGAGGAATT
GAGCCAGCAGTACAATGCCGCCTTTCTGAAGGTCGACATTGACGAAGCTG
ACGACGTCGCCCAAGCTTTTGCCATCCGTTCCATGCCCACCTTTGTATTC
CTCAGGCCTAAGGATGGCCTAGAGGAAGAGATTCGGTTTTCGGGCGCTAA
CAAACCCAAGCTGGAGGGATTGGTTCGCGCGACTTGCGCGGCGGTCGTGA
GGGACGGGACGGAGGAGGAAGACAAGAAGAGCAAGTAGAAGAAATGAGTG
AGGGAAAGAGGGGGTGTACTTGTAGTGTGTGTAGCCGTAGAGACACTGAG
TCCATGGAGTGACCGAAAGAAGTATAATTATATGAAACAAAAGCGCAAGG
GATTCTTTGAGCTTAGACCACTTGTAGGGAAAATATTTTTGAAAATAAAA
CAAAATATGCTTTCTTGCAAGGGCGATCGGTAGTAGGGAACAGTTTGCTC
GATGCATTTGGTCGTAAGCTTATTTACTAAGAAAGGCCGACAAAATAAAT
AATAGGTTGAAGCGATACGCCATACCTTCAACTCCTCACTCACATATCAC
CATTTAGCACTCATGGAAAGCACTCTAATCCACGTCCACTTATGCATCCA
CATTACAGCATACCCCACAGGACTAGCCTTATTGTGCCAACCAGCTAAAC
CGCTTTCTCGCTTTGTTCCAACTCTCAAACGACGCTGTGCTGGACTGCAC
CCGTCAACGAGAGATGATGATGATGAAGAAGAAGCTGCCTTTGCTCTTGC
TATGCATGGTACTAGCTCTATATAGCATCGCTGCCACCACCGTCAGCACC
TCTACGACGTCTGCACAATTCTCTCCTTCTCCTAGAAGTTCCAAACCCCG
TCGCCGTTCGCCAGCCCATTCCCTACCCATACTCCCCTTGCAAGCACGAC
GTGGCGGTGCCGCCGTGAAGCCCAAGAGGGCTGCAGCTAGCGCCACAAAA
GACAAGAAAATCTCGCTGGTCTACCCCATCTTGGCGGCGTACCTCTATAA
TCTTAGCATTGGATTCACTGTCCCTGTACTGCCGAAGATAATCAATATGC
TCGTCAATGACGGTGATCCTAAGGTATCACCCGCGTCCGCCCGCATGTAC
GGCCTGGTGCAAGCAACCGACCAAGCAGTCACGTTCCTCCTTGTGAATGG
TGCGTGCCTCCTGTCGGACAAATATGGAAGGCGCCCTTTGATGGCCTTAG
CCAACGTGGGCTTGGGCACAGGTAGGTGGTAGGTAGGTAGGTAGGTAGGT
AGGAAGGGAGGAAATAGATTAAGTGCCACGAGTACGGCCTGATTTTTCAA
CACCCTCTTCTTCCTTCTCCTCCTCCGTCTCCTTTGCTTCTCCCAAGGTC
AACTAATCGCTTCCCTCGCCACCAACCCCCGCCTCCTCCTCCTCGGTGCG
GCCATCGACGGTGCCACCTCCTTCTCCTACCCTCTTGCTCAGTCCTATAT
CGCGGATATCACCCCGCCTTCCTCCCTCCCTCAGGCCCTCGGTCTTTTCC
AGGGCGTGGCCACCGGTGGTGCCTTCCTCCTCGGCATTCCTCTCTCTGGT
TTAATCGCCGCTAAAAAGGGTCTAAGACTCTCTTTGTACATAGCCGCGGG
TATCTGCGCCACTAATGTCCTCTTCATTAGTGCCGCCCTCCCTGAATCCC
TCCCTCCCTCCCTCCGCCGTGCGGATGCGTCTTTGCTTGAGGCAAACGTC
TGGGGAGCCGTTAGGACGGTAGCCACCAACCCCTTCATTGCTCTTTGTTC
GCTCACCTACTTCCTCCTCCATCTGGCACTCAATGGACTGCAGGTAGGCA
GGAAGGAAGGAAGGAAGGAAGGAAGGGAGGGCGAAGGAGAAAGGGAGGGA
GAGGGGGGAGACGAATGTGTTGTGAGAACCGACATGCTTTTTATCGCC

protein sequence of jgi.p|Nanoce1779_2|587128

>mRNA_4602-protein ID=mRNA_4602-protein|Name=jgi.p|Nanoce1779_2|587128|organism=Nannochloropsis oceanica|type=polypeptide|length=188bp
MTNICIGPFCVPLGALIPFLFVLFRVALSWFKDRLGAGSPEEQALAAMPR
PPAVNKRTWTDSSIVHITDVAHLAKIRAQAREAGVPVVIDFTATWCGPCR
TIAPVFEELSQQYNAAFLKVDIDEADDVAQAFAIRSMPTFVFLRPKDGLE
EEIRFSGANKPKLEGLVRATCAAVVRDGTEEEDKKSK*

mRNA from alignment at scaffold_9:154093..156911+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4602 ID=mRNA_4602|Name=jgi.p|Nanoce1779_2|587128|organism=Nannochloropsis oceanica|type=mRNA|length=2819bp|location=Sequence derived from alignment at scaffold_9:154093..156911+ (Nannochloropsis oceanica)
AGTATACAGTCTCGACTCCTCACCATGACGAACATATGCATCGGTCCCTT
CTGTGTGCCTCTCGGCGCGCTTATCCCTTTCCTTTTCGTCCTCTTCCGGG
TGGCATTATCTTGGTTTAAAGATCGTCTAGGTGCCGGTTCCCCAGAGGAG
CAAGCCTTGGCCGCCATGCCCCGCCCGCCCGCGGTGAATAAGCGCACGTG
GACTGATTCCTCCATCGTCCACATCACTGACGTCGCCCACTTGGCCAAGA
TCCGGGCACAGGCTAGAGAGGCGGGCGTACCGGTGGTGATTGATTTCACA
GCCACCTGGTGTGGGCCATGCCGGACGATTGCGCCTGTCTTTGAGGAATT
GAGGTATGTATGCATGTATATATATAAATGTACCGGACCGACAGAGTGAA
AGATTATTGATTTGGTGCTCTTAAGCTATCCTCTCCGTCGATTAACGATG
ATTTTATTTTTCTGTCATGTTCCGTTGCTAACACTCCTCTCTCCCTCTCA
CAGCCAGCAGTACAATGCCGCCTTTCTGAAGGTCGACATTGACGAAGCTG
ACGACGTCGCCCAAGCTTTTGCCATCCGTTCCATGCCCACCTTTGTATTC
CTCAGGCCTAAGGATGGCCTAGAGGAAGAGATTCGGTTTTCGGGCGCTAA
CAAACCCAAGCTGGAGGGATTGGTTCGCGCGACTTGCGCGGCGGTCGTGA
GGGACGGGACGGAGGAGGAAGACAAGAAGAGCAAGTAGAAGAAATGAGTG
AGGGAAAGAGGGGGTGTACTTGTAGTGTGTGTAGCCGTAGAGACACTGAG
TCCATGGAGTGACCGAAAGAAGTATAATTATATGAAACAAAAGCGCAAGG
GATTCTTTGAGCTTAGACCACTTGTAGGGAAAATATTTTTGAAAATAAAA
CAAAATATGCTTTCTTGCAAGGGCGATCGGTAGTAGGGAACAGTTTGCTC
GATGCATTTGGTCGTAAGCTTATTTACTAAGAAAGGCCGACAAAATAAAT
AATAGGTTGAAGCGATACGCCATACCTTCAACTCCTCACTCACATATCAC
CATTTAGCACTCATGGAAAGCACTCTAATCCACGTCCACTTATGCATCCA
CATTACAGCATACCCCACAGGACTAGCCTTATTGTGCCAACCAGCTAAAC
CGCTTTCTCGCTTTGTTCCAACTCTCAAACGACGCTGTGCTGGACTGCAC
CCGTCAACGAGAGATGATGATGATGAAGAAGAAGCTGCCTTTGCTCTTGC
TATGCATGGTACTAGCTCTATATAGCATCGCTGCCACCACCGTCAGCACC
TCTACGACGTCTGCACAATTCTCTCCTTCTCCTAGAAGTTCCAAACCCCG
TCGCCGTTCGCCAGCCCATTCCCTACCCATACTCCCCTTGCAAGCACGAC
GTGGCGGTGCCGCCGTGAAGCCCAAGAGGGCTGCAGCTAGCGCCACAAAA
GACAAGAAAATCTCGCTGGTCTACCCCATCTTGGCGGCGTACCTCTATAA
TCTTAGGTATTGTGCCATGATTGGATTTGTCTGCTGCGTCGCCTTTCCTC
ACAACCCGCTCTTGTTCCCCTCTCACCCACCCACCCTCCTTAAATGCAGC
ATTGGATTCACTGTCCCTGTACTGCCGAAGATAATCAATATGCTCGTCAA
TGACGGTGATCCTAAGGTAAGGCTTTCCCCCCCCCCCATTACTATTTTCC
ACTATTTCCGCTATCTCTCTTCATACATATATGTCCTGTTTCCCGAATCT
TCTGCAATGGGGCCGTTGGAATGCTCCCCCCTCCTTCCCGTCCCTCTCAT
CTCCCTCCTTCCCTCCCTCTCTGCCTCCTTCAGGTATCACCCGCGTCCGC
CCGCATGTACGGCCTGGTGCAAGCAACCGACCAAGCAGTCACGTTCCTCC
TTGTGAATGGTGCGTGCCTCCTGTCGGACAAATATGGAAGGCGCCCTTTG
ATGGCCTTAGCCAACGTGGGCTTGGGCACAGGTAGGTGGTAGGTAGGTAG
GTAGGTAGGTAGGAAGGGAGGAAATAGATTAAGTGCCACGAGTACGGCCT
GATTTTTCAACACCCTCTTCTTCCTTCTCCTCCTCCGTCTCCTTTGCTTC
TCCCAAGGTCAACTAATCGCTTCCCTCGCCACCAACCCCCGCCTCCTCCT
CCTCGGTGCGGCCATCGACGGTGCCACCTCCTTCTCCTACCCTCTTGCTC
AGTCCTATATCGCGGATATCACCCCGCCTTCCTCCCTCCCTCAGGCCCTC
GGTCTTTTCCAGGGCGTGGCCACCGGTGGTGCCTTCCTCCTCGGCATTCC
TCTCTCTGGTTTAATCGCCGCTAAAAAGGGTCTAAGACTCTCTTTGTACA
TAGCGTGAGTATATACCTGCCCTCCCCATCTTTCCGCCTCTCCCTTCCTC
CTTCCGGGCATCAAGGCCTCGCTCCTCTTTAGCTTTGAAAGAAAAGACAG
CGCGACATTTCACCAACTCACCATCTATACCCTCCCTCCCTCCCTCCCTC
CCTGCCTTCCTCTAGCGCGGGTATCTGCGCCACTAATGTCCTCTTCATTA
GTGCCGCCCTCCCTGAATCCCTCCCTCCCTCCCTCCGCCGTGCGGATGCG
TCTTTGCTTGAGGCAAACGTCTGGGGAGCCGTTAGGACGGTAGCCACCAA
CCCCTTCATTGCTCTTTGTTCGCTCACCTACTTCCTCCTCCATCTGGCAC
TCAATGGACTGCAGGTAGGCAGGAAGGAAGGAAGGAAGGAAGGAAGGGAG
GGCGAAGGAGAAAGGGAGGGAGAGGGGGGAGACGAATGTGTTGTGAGAAC
CGACATGCTTTTTATCGCC

Coding sequence (CDS) from alignment at scaffold_9:154093..156911+

>mRNA_4602 ID=mRNA_4602|Name=jgi.p|Nanoce1779_2|587128|organism=Nannochloropsis oceanica|type=CDS|length=1128bp|location=Sequence derived from alignment at scaffold_9:154093..156911+ (Nannochloropsis oceanica)
ATGACGAACATATGCATCGGTCCCTTCTGTGTGCCTCTCGGCGCGCTTAT
CCCTTTCCTTTTCGTCCTCTTCCGGGTGGCATTATCTTGGTTTAAAGATC
GTCTAGGTGCCGGTTCCCCAGAGGAGCAAGCCTTGGCCGCCATGCCCCGC
CCGCCCGCGGTGAATAAGCGCACGTGGACTGATTCCTCCATCGTCCACAT
CACTGACGTCGCCCACTTGGCCAAGATCCGGGCACAGGCTAGAGAGGCGG
GCGTACCGGTGGTGATTGATTTCACAGCCACCTGGTGTGGGCCATGCCGG
ACGATTGCGCCTGTCTTTGAGGAATTGAGCCAGCAGTACAATGCCGCCTT
TCTGAAGGTCGACATTGACGAAGCTGACGACGTCGCCCAAGCTTTTGCCA
TCCGTTCCATGCCCACCTTTGTATTCCTCAGGCCTAAGGATGGCCTAGAG
GAAGAGATTCGGTTTTCGGGCGCTAACAAACCCAAGCTGGAGGGATTGGT
TCGCGCGACTTGCGCGGCGGTCGTGAGGGACGGGACGGAGGAGGAAGACA
AGAAGAGCAAGTAGATGACGAACATATGCATCGGTCCCTTCTGTGTGCCT
CTCGGCGCGCTTATCCCTTTCCTTTTCGTCCTCTTCCGGGTGGCATTATC
TTGGTTTAAAGATCGTCTAGGTGCCGGTTCCCCAGAGGAGCAAGCCTTGG
CCGCCATGCCCCGCCCGCCCGCGGTGAATAAGCGCACGTGGACTGATTCC
TCCATCGTCCACATCACTGACGTCGCCCACTTGGCCAAGATCCGGGCACA
GGCTAGAGAGGCGGGCGTACCGGTGGTGATTGATTTCACAGCCACCTGGT
GTGGGCCATGCCGGACGATTGCGCCTGTCTTTGAGGAATTGAGCCAGCAG
TACAATGCCGCCTTTCTGAAGGTCGACATTGACGAAGCTGACGACGTCGC
CCAAGCTTTTGCCATCCGTTCCATGCCCACCTTTGTATTCCTCAGGCCTA
AGGATGGCCTAGAGGAAGAGATTCGGTTTTCGGGCGCTAACAAACCCAAG
CTGGAGGGATTGGTTCGCGCGACTTGCGCGGCGGTCGTGAGGGACGGGAC
GGAGGAGGAAGACAAGAAGAGCAAGTAG

Synonyms

Publications