jgi.p|Nanoce1779_2|437061, mRNA_4601 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|437061
Unique NamemRNA_4601
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1369
Alignment locationscaffold_9:151955..153607 -

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Properties
Property NameValue
TranscriptId437147
TrackFilteredModels2
ProteinId437061
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:151955..153607 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|437061gene_4601Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|437061mRNA_4601-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4601CDS_4601Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4601 ID=mRNA_4601|Name=jgi.p|Nanoce1779_2|437061|organism=Nannochloropsis oceanica|type=mRNA|length=1369bp
GGTTGACACCAAAGTCAATGAAATGCGCGTGTACTAGCAACTCATGACTT
TTTGGTTTGAGACGATGCGCTTCTCAGCACAGCTCGACAACGTATACCAA
TCAAGTCATGCATGCCCTCCTTTTGGCCGCCCCTGGCCTTGCACTATGAA
CGCCGCCACTTACTGCTCCTCCGCACATGCATACACAACACCCACAGGAC
CGGCTGTTAGAATCTTGTCGTCTGGCCGCCTGTGCTGGGGTTCCTGGTTG
TCGTCACACCTAGCAATACTATAAACTATACTTCCCCCGCCTCCCTCCCT
GTGAGTCATCAGCATCAGGCATGGACAAAAAGGACAAGCAACGGCAGTCC
TCCTCTTCTTCGTCCTCGTCCTCTTTTCCCTCCTCCTCCATTCCCTCTTC
GGAAGAAAGATCGACAACCCCCGTCGGCACGACGGCCGCATCAGTGTCCT
CCACTACCACGATCGGAGGCGGCATCCTATCCTCTTCCTCTTCCTCGTCC
TTGCAGCCCCCACGCTACCAACGACCCCCTAAGGCCGAAATAGACTATGC
CTCGGCCTTGCCAGACGAAATGCTGGTGCGGATCTTGCTGTTTCTGGACA
TTGATTCAGGGGTGACATCTACTCTGACTTCCACGCGGTGGCGGCCATTA
TTCACTGAACGGGTTTGTCAGGCACATTGCGAGAGAGTGTATCTGGACCA
GTCCCGCACCAAACGCCTCAACCCCGCCCGCTTTAACGGCAGCTGGAAGA
AGATGCTTTTCACCCGCCCTAGAGTAAGGACCAATGGCTTGTATTTCCTC
CTGTCGAGCTACATTAAGAAACCGATGAAGGACATGTGGACCGAGATCAC
CCCGGGCTCCATTCTGGAAGTCAAGTACTATCGCTACCTGCGCTTCCTCC
CCAACGGACGTCTGGTCTACGCCTTGCTCTACCTCCCTCCCTCCGAAGCC
GTGCGACTATTCAAAGATTGGGGATCAGCGCACCCTTCCTCCTTCATGTC
CTCGTCCTCGTCCTTACCCTCGTCCTCCTCCGCGGCCTGTGTGCGAGCGC
AGGTGGAAAGGAGGGAGGGTGGGAGGGAGGGAGGGGTGACCACCAGCAAT
AAGAAGAAGGAATTGAGCGAGGGTGTGTATTGGACGCACAAGAAAGAGAT
TTATTGTCAGATTCGGACATCTTACTCCTTGATTAATTTCCGGTTGGAAA
TCGGAGAGAGGGGGGCAGGGAGGGAGGGAGGGAGGGGGGGGGAAGTTTAC
GGAGCTGGCGATGGAGGAGCATTCGAGCGTGCCATACAATGACCCGACGG
CGACACCAGTTGCACACAAGCCGGCGTATGCCCCCTTCATGTTTCACAGG
GTCTCCATGTGGTAAATAA
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protein sequence of jgi.p|Nanoce1779_2|437061

>mRNA_4601-protein ID=mRNA_4601-protein|Name=jgi.p|Nanoce1779_2|437061|organism=Nannochloropsis oceanica|type=polypeptide|length=324bp
MDKKDKQRQSSSSSSSSSFPSSSIPSSEERSTTPVGTTAASVSSTTTIGG
GILSSSSSSSLQPPRYQRPPKAEIDYASALPDEMLVRILLFLDIDSGVTS
TLTSTRWRPLFTERVCQAHCERVYLDQSRTKRLNPARFNGSWKKMLFTRP
RVRTNGLYFLLSSYIKKPMKDMWTEITPGSILEVKYYRYLRFLPNGRLVY
ALLYLPPSEAVRLFKDWGSAHPSSFMSSSSSLPSSSSAACVRAQVERREG
GREGGVTTSNKKKELSEGVYWTHKKEIYCQIRTSYSLINFRLEIGERGAG
REGGRGGEVYGAGDGGAFERAIQ*
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mRNA from alignment at scaffold_9:151955..153607-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4601 ID=mRNA_4601|Name=jgi.p|Nanoce1779_2|437061|organism=Nannochloropsis oceanica|type=mRNA|length=1653bp|location=Sequence derived from alignment at scaffold_9:151955..153607- (Nannochloropsis oceanica)
GGTTGACACCAAAGTCAATGAAATGCGCGTGTACTAGCAACTCATGACTT
TTTGGTTTGAGACGATGCGCTTCTCAGCACAGCTCGACAACGTATACCAA
TCAAGTCATGCATGCCCTCCTTTTGGCCGCCCCTGGCCTTGCACTATGAA
CGCCGCCACTTACTGCTCCTCCGCACATGCATACACAACACCCACAGGAC
CGGCTGTTAGAATCTTGTCGTCTGGCCGCCTGTGCTGGGGTTCCTGGTTG
TCGTCACACCTAGCAATACTATAAACTATACTTCCCCCGCCTCCCTCCCT
GTGAGTCATCAGCATCAGGCATGGACAAAAAGGACAAGCAACGGCAGTCC
TCCTCTTCTTCGTCCTCGTCCTCTTTTCCCTCCTCCTCCATTCCCTCTTC
GGAAGAAAGATCGACAACCCCCGTCGGCACGACGGCCGCATCAGTGTCCT
CCACTACCACGATCGGAGGCGGCATCCTATCCTCTTCCTCTTCCTCGTCC
TTGCAGCCCCCACGCTACCAACGACCCCCTAAGGCCGAAATAGACTATGC
CTCGGCCTTGCCAGACGAAATGCTGGTGCGGATCTTGCTGTTTCTGGACA
TTGATTCAGGGGTGACATCTACTCTGACTTCCACGCGGTGGCGGCCATTA
TTCACTGAACGGGTTTGTCAGGCACATTGCGAGAGAGTGTATCTGGACCA
GGTAGCGAGAGAGGGAGGGAAGGAGGGAGGAAGGTAGGGAAGGAGGACAG
TGTGCAGCGAGGAAATAGTGTTCTATGTTCACTTGTCTACGGCTGTGACG
CTCACACACCTTCCTTCCCTCCCTCCCTCCCTCGCTCGCTCGCCGCAGTC
CCGCACCAAACGCCTCAACCCCGCCCGCTTTAACGGCAGCTGGAAGAAGA
TGCTTTTCACCCGCCCTAGAGTAAGGACCAATGGCTTGTATTTCCTCCTG
TCGAGCTACATTAAGAAACCGATGAAGGTACCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCTGACCCCTTCCTATGAGCAACGTACCACTCAATCCGTTCC
TTTCCCGCACTTCATCTCCTCACTCCTCCCTCTCTCCCTCCCTCCCTCTC
TCCCTCCTTGATAGGACATGTGGACCGAGATCACCCCGGGCTCCATTCTG
GAAGTCAAGTACTATCGCTACCTGCGCTTCCTCCCCAACGGACGTCTGGT
CTACGCCTTGCTCTACCTCCCTCCCTCCGAAGCCGTGCGACTATTCAAAG
ATTGGGGATCAGCGCACCCTTCCTCCTTCATGTCCTCGTCCTCGTCCTTA
CCCTCGTCCTCCTCCGCGGCCTGTGTGCGAGCGCAGGTGGAAAGGAGGGA
GGGTGGGAGGGAGGGAGGGGTGACCACCAGCAATAAGAAGAAGGAATTGA
GCGAGGGTGTGTATTGGACGCACAAGAAAGAGATTTATTGTCAGATTCGG
ACATCTTACTCCTTGATTAATTTCCGGTTGGAAATCGGAGAGAGGGGGGC
AGGGAGGGAGGGAGGGAGGGGGGGGGAAGTTTACGGAGCTGGCGATGGAG
GAGCATTCGAGCGTGCCATACAATGACCCGACGGCGACACCAGTTGCACA
CAAGCCGGCGTATGCCCCCTTCATGTTTCACAGGGTCTCCATGTGGTAAA
TAA
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Coding sequence (CDS) from alignment at scaffold_9:151955..153607-

>mRNA_4601 ID=mRNA_4601|Name=jgi.p|Nanoce1779_2|437061|organism=Nannochloropsis oceanica|type=CDS|length=2916bp|location=Sequence derived from alignment at scaffold_9:151955..153607- (Nannochloropsis oceanica)
GACATGTGGACCGAGATCACCCCGGGCTCCATTCTGGAAGTCAAGTACTA
TCGCTACCTGCGCTTCCTCCCCAACGGACGTCTGGTCTACGCCTTGCTCT
ACCTCCCTCCCTCCGAAGCCGTGCGACTATTCAAAGATTGGGGATCAGCG
CACCCTTCCTCCTTCATGTCCTCGTCCTCGTCCTTACCCTCGTCCTCCTC
CGCGGCCTGTGTGCGAGCGCAGGTGGAAAGGAGGGAGGGTGGGAGGGAGG
GAGGGGTGACCACCAGCAATAAGAAGAAGGAATTGAGCGAGGGTGTGTAT
TGGACGCACAAGAAAGAGATTTATTGTCAGATTCGGACATCTTACTCCTT
GATTAATTTCCGGTTGGAAATCGGAGAGAGGGGGGCAGGGAGGGAGGGAG
GGAGGGGGGGGGAAGTTTACGGAGCTGGCGATGGAGGAGCATTCGAGCGT
GCCATACAATGATCCCGCACCAAACGCCTCAACCCCGCCCGCTTTAACGG
CAGCTGGAAGAAGATGCTTTTCACCCGCCCTAGAGTAAGGACCAATGGCT
TGTATTTCCTCCTGTCGAGCTACATTAAGAAACCGATGAAGATGGACAAA
AAGGACAAGCAACGGCAGTCCTCCTCTTCTTCGTCCTCGTCCTCTTTTCC
CTCCTCCTCCATTCCCTCTTCGGAAGAAAGATCGACAACCCCCGTCGGCA
CGACGGCCGCATCAGTGTCCTCCACTACCACGATCGGAGGCGGCATCCTA
TCCTCTTCCTCTTCCTCGTCCTTGCAGCCCCCACGCTACCAACGACCCCC
TAAGGCCGAAATAGACTATGCCTCGGCCTTGCCAGACGAAATGCTGGTGC
GGATCTTGCTGTTTCTGGACATTGATTCAGGGGTGACATCTACTCTGACT
TCCACGCGGTGGCGGCCATTATTCACTGAACGGGTTTGTCAGGCACATTG
CGAGAGAGTGTATCTGGACCAGGACATGTGGACCGAGATCACCCCGGGCT
CCATTCTGGAAGTCAAGTACTATCGCTACCTGCGCTTCCTCCCCAACGGA
CGTCTGGTCTACGCCTTGCTCTACCTCCCTCCCTCCGAAGCCGTGCGACT
ATTCAAAGATTGGGGATCAGCGCACCCTTCCTCCTTCATGTCCTCGTCCT
CGTCCTTACCCTCGTCCTCCTCCGCGGCCTGTGTGCGAGCGCAGGTGGAA
AGGAGGGAGGGTGGGAGGGAGGGAGGGGTGACCACCAGCAATAAGAAGAA
GGAATTGAGCGAGGGTGTGTATTGGACGCACAAGAAAGAGATTTATTGTC
AGATTCGGACATCTTACTCCTTGATTAATTTCCGGTTGGAAATCGGAGAG
AGGGGGGCAGGGAGGGAGGGAGGGAGGGGGGGGGAAGTTTACGGAGCTGG
CGATGGAGGAGCATTCGAGCGTGCCATACAATGATCCCGCACCAAACGCC
TCAACCCCGCCCGCTTTAACGGCAGCTGGAAGAAGATGCTTTTCACCCGC
CCTAGAGTAAGGACCAATGGCTTGTATTTCCTCCTGTCGAGCTACATTAA
GAAACCGATGAAGATGGACAAAAAGGACAAGCAACGGCAGTCCTCCTCTT
CTTCGTCCTCGTCCTCTTTTCCCTCCTCCTCCATTCCCTCTTCGGAAGAA
AGATCGACAACCCCCGTCGGCACGACGGCCGCATCAGTGTCCTCCACTAC
CACGATCGGAGGCGGCATCCTATCCTCTTCCTCTTCCTCGTCCTTGCAGC
CCCCACGCTACCAACGACCCCCTAAGGCCGAAATAGACTATGCCTCGGCC
TTGCCAGACGAAATGCTGGTGCGGATCTTGCTGTTTCTGGACATTGATTC
AGGGGTGACATCTACTCTGACTTCCACGCGGTGGCGGCCATTATTCACTG
AACGGGTTTGTCAGGCACATTGCGAGAGAGTGTATCTGGACCAGGACATG
TGGACCGAGATCACCCCGGGCTCCATTCTGGAAGTCAAGTACTATCGCTA
CCTGCGCTTCCTCCCCAACGGACGTCTGGTCTACGCCTTGCTCTACCTCC
CTCCCTCCGAAGCCGTGCGACTATTCAAAGATTGGGGATCAGCGCACCCT
TCCTCCTTCATGTCCTCGTCCTCGTCCTTACCCTCGTCCTCCTCCGCGGC
CTGTGTGCGAGCGCAGGTGGAAAGGAGGGAGGGTGGGAGGGAGGGAGGGG
TGACCACCAGCAATAAGAAGAAGGAATTGAGCGAGGGTGTGTATTGGACG
CACAAGAAAGAGATTTATTGTCAGATTCGGACATCTTACTCCTTGATTAA
TTTCCGGTTGGAAATCGGAGAGAGGGGGGCAGGGAGGGAGGGAGGGAGGG
GGGGGGAAGTTTACGGAGCTGGCGATGGAGGAGCATTCGAGCGTGCCATA
CAATGATCCCGCACCAAACGCCTCAACCCCGCCCGCTTTAACGGCAGCTG
GAAGAAGATGCTTTTCACCCGCCCTAGAGTAAGGACCAATGGCTTGTATT
TCCTCCTGTCGAGCTACATTAAGAAACCGATGAAGATGGACAAAAAGGAC
AAGCAACGGCAGTCCTCCTCTTCTTCGTCCTCGTCCTCTTTTCCCTCCTC
CTCCATTCCCTCTTCGGAAGAAAGATCGACAACCCCCGTCGGCACGACGG
CCGCATCAGTGTCCTCCACTACCACGATCGGAGGCGGCATCCTATCCTCT
TCCTCTTCCTCGTCCTTGCAGCCCCCACGCTACCAACGACCCCCTAAGGC
CGAAATAGACTATGCCTCGGCCTTGCCAGACGAAATGCTGGTGCGGATCT
TGCTGTTTCTGGACATTGATTCAGGGGTGACATCTACTCTGACTTCCACG
CGGTGGCGGCCATTATTCACTGAACGGGTTTGTCAGGCACATTGCGAGAG
AGTGTATCTGGACCAG
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Synonyms
Publications