jgi.p|Nanoce1779_2|627914, mRNA_460 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|627914
Unique Name	mRNA_460
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	911
Alignment location	scaffold_3:1123485..1124395 +

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Properties


Property Name	Value
TranscriptId	628000
Track	FilteredModels2
ProteinId	627914

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1123485..1124395 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627914	gene_460	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627914	mRNA_460-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_460	CDS_460	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1123485..1124395+
coding sequence from alignment at scaffold_3:1123485..1124395+

mRNA sequence

>mRNA_460 ID=mRNA_460|Name=jgi.p|Nanoce1779_2|627914|organism=Nannochloropsis oceanica|type=mRNA|length=911bp
GGGAAGGGCGGCGTGTGAGTGCTTGCTTTACAAAGGGGGCTGATTTCTTC
TCTCTAGCCCAAAAGAGAGCCAACAGCTGCTGGGAGCCTGGCATGATGGC
ATCCTCCCCGCCGTCAGTCACCACTGCCGCTAATCTGTCCACCTGCGACG
CATTGCCCACATCTATGAGCAGCGTGTGGGCGTGTGATATGTCGCTGGGT
GGTGAGGCGCCAATTGACAAGACGATCATGATTGAACAGCACTTGCACGC
AAGACAGTGTTGTATCTTGCCTTCTCGAGTCGACGTTCTCGAAAACGCAC
GTGGCTGGGAGAAAGGAGCCGCGTCCCGCCGCCCAATGCACCTCGACATT
CACGATCACACAGGCTATGAGGGAAGGCACAATTTGCGCTTTACTGACAT
AAAGCAACAATTGGGGGTGAAGTCCTCTGATCATCAGAAATTCTCTTGAG
AAGAGGCAATCGCTGCTTGACAACAAGGACGGGCATCAGATAAGGCAAGC
AGCAGATGGCTTCATTACTCAGAGAATTTCACGCCGCAAACGCCATACGA
GTGCATTTTTTACAAATACTGATTTGCGATGAAAAGATAACAAATGAGCA
TGTATATGTGAAGATGCGCGCCCGGCAGGCTCGCCGGAGCCACACGTGCA
AGCCCTCGGTGAAGCTTGATTTGCTGCTTTGATGTCATCGCCAATGCTGC
GGTGTCCCAACTGGGGGAAAGCGCTCGTTGTTCCCCAAGCCAGCTGTGCC
CGGAGATTCCAATCAGTTCTGCACTCCCCCCGCCCCCTTTGGTTGTTGTG
ACAAAAGTAAAAGGGGAGACACCTTGAGTCTTATGTCCCTAGCTTTTCAT
TACTTCCCCCCCTAATTCGGATCAAGTTGCCCTTCCGGAAATGTGGTGGC
GTACGGTTTTC

protein sequence of jgi.p|Nanoce1779_2|627914

>mRNA_460-protein ID=mRNA_460-protein|Name=jgi.p|Nanoce1779_2|627914|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MMASSPPSVTTAANLSTCDALPTSMSSVWACDMSLGGEAPIDKTIMIEQH
LHARQCCILPSRVDVLENARGWEKGAASRRPMHLDIHDHTGYEGRHNLRF
TDIKQQLGVKSSDHQKFS*

mRNA from alignment at scaffold_3:1123485..1124395+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_460 ID=mRNA_460|Name=jgi.p|Nanoce1779_2|627914|organism=Nannochloropsis oceanica|type=mRNA|length=911bp|location=Sequence derived from alignment at scaffold_3:1123485..1124395+ (Nannochloropsis oceanica)
GGGAAGGGCGGCGTGTGAGTGCTTGCTTTACAAAGGGGGCTGATTTCTTC
TCTCTAGCCCAAAAGAGAGCCAACAGCTGCTGGGAGCCTGGCATGATGGC
ATCCTCCCCGCCGTCAGTCACCACTGCCGCTAATCTGTCCACCTGCGACG
CATTGCCCACATCTATGAGCAGCGTGTGGGCGTGTGATATGTCGCTGGGT
GGTGAGGCGCCAATTGACAAGACGATCATGATTGAACAGCACTTGCACGC
AAGACAGTGTTGTATCTTGCCTTCTCGAGTCGACGTTCTCGAAAACGCAC
GTGGCTGGGAGAAAGGAGCCGCGTCCCGCCGCCCAATGCACCTCGACATT
CACGATCACACAGGCTATGAGGGAAGGCACAATTTGCGCTTTACTGACAT
AAAGCAACAATTGGGGGTGAAGTCCTCTGATCATCAGAAATTCTCTTGAG
AAGAGGCAATCGCTGCTTGACAACAAGGACGGGCATCAGATAAGGCAAGC
AGCAGATGGCTTCATTACTCAGAGAATTTCACGCCGCAAACGCCATACGA
GTGCATTTTTTACAAATACTGATTTGCGATGAAAAGATAACAAATGAGCA
TGTATATGTGAAGATGCGCGCCCGGCAGGCTCGCCGGAGCCACACGTGCA
AGCCCTCGGTGAAGCTTGATTTGCTGCTTTGATGTCATCGCCAATGCTGC
GGTGTCCCAACTGGGGGAAAGCGCTCGTTGTTCCCCAAGCCAGCTGTGCC
CGGAGATTCCAATCAGTTCTGCACTCCCCCCGCCCCCTTTGGTTGTTGTG
ACAAAAGTAAAAGGGGAGACACCTTGAGTCTTATGTCCCTAGCTTTTCAT
TACTTCCCCCCCTAATTCGGATCAAGTTGCCCTTCCGGAAATGTGGTGGC
GTACGGTTTTC

Coding sequence (CDS) from alignment at scaffold_3:1123485..1124395+

>mRNA_460 ID=mRNA_460|Name=jgi.p|Nanoce1779_2|627914|organism=Nannochloropsis oceanica|type=CDS|length=357bp|location=Sequence derived from alignment at scaffold_3:1123485..1124395+ (Nannochloropsis oceanica)
ATGATGGCATCCTCCCCGCCGTCAGTCACCACTGCCGCTAATCTGTCCAC
CTGCGACGCATTGCCCACATCTATGAGCAGCGTGTGGGCGTGTGATATGT
CGCTGGGTGGTGAGGCGCCAATTGACAAGACGATCATGATTGAACAGCAC
TTGCACGCAAGACAGTGTTGTATCTTGCCTTCTCGAGTCGACGTTCTCGA
AAACGCACGTGGCTGGGAGAAAGGAGCCGCGTCCCGCCGCCCAATGCACC
TCGACATTCACGATCACACAGGCTATGAGGGAAGGCACAATTTGCGCTTT
ACTGACATAAAGCAACAATTGGGGGTGAAGTCCTCTGATCATCAGAAATT
CTCTTGA

Synonyms

Publications