jgi.p|Nanoce1779_2|563050, mRNA_46 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|563050
Unique Name	mRNA_46
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1350
Alignment location	scaffold_3:132116..133933 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	563136
Track	FilteredModels2
ProteinId	563050

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:132116..133933 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|563050	gene_46	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|563050	mRNA_46-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_46	CDS_46	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:132116..133933+
coding sequence from alignment at scaffold_3:132116..133933+

mRNA sequence

>mRNA_46 ID=mRNA_46|Name=jgi.p|Nanoce1779_2|563050|organism=Nannochloropsis oceanica|type=mRNA|length=1350bp
ATGCTCCTCGCCACCGTTGTGTCCTTCTCGGGAGAAGGCGCGGCGGCCGC
TGGGAAAGCCCAGCAAGATCTCGAATCTGCCTACCCTGCTGTTGCTGCTG
CTCTCTTGCAGGGCGGGGGGCAACCGGAGCCGTTGGCTCGACAGAAGTTC
ACGGTGATGGTGAACACTTACAAGAGGCACGACATGGCCAAAGACGCTGT
CCGGCACTATGCCGCGTGTGCCAAGGTTGACTCCATCCGCGTCGTTTGGT
CGGAGAACGGGACTTCTCCTCCTTCCCCCACTGACGAGAAAGACAAGGGA
TGGTTCAGTGAGCACAAGCCCGTTTTCTACGACACCTACTCAACGACCAG
TTTGAATAACCGTTTCGTCCCGCCCGTCGGCGAGGACGGGAAGGATAACG
GCTTGGTTACTGACGCCGTGTTCGCCGTGGACGATGACATCCGGGTCCCA
TGCACCGACTTGGATTTTGCCTTTGGTGTGTGGAAGGTGGCGGATGAGTC
GCTGGTGGGATTCATGCCGCGCATCCATACGATGAACCCCAAGGCATTGA
GGGCTGTGGCGGAGGCGGAAGGGCGCAAGGCCAAGAAGAAGGAGGAGAGA
CGGCGGAGGAAGAAGGGGGATGAAAGCAGGGAGAAAATAAGAGAGGGGGA
TGGGGAGGCGGAGGAGGGAGTTGGCAGGGGGGGAATGGAGGAAGAGGAGG
AAGACATTTTGGACGTGGAGGCGGAAGAGGGAGGGAAGGAGGGAGGGAGG
GATGGGGGAGGGCTGAGGGGGGGGAAGATCCCTCCGCCCTTGTTTCGCTA
CAACGGGTGGTGGAAGGTGTGGTGGGAGGGTGAATACTCTCTTGTATTGA
CCAAGGCAGCTTTCTTGCACCGCTCTTTTTTAACGGCCTACACGGAACTG
ATGCCGGGGACGATTCGGGCGTATGTGGACGAGAACCGGAATTGTGAGGA
CATTGCCATGCAGTTCCTCGCCACCAACATGACAGGAAAGCCGCCCATTT
TTGTGAGGGGGCGGTTAACGGACTTGGGGGTGTTTAAAGGTATCTCAACC
AAAAGCTGGACGCAACTCGGGCACATGAAAAGCCGCGGACAGTGCCTCAA
CGACTTTGTGGATCTGTACGGGGGAAGAATGCCCCTGGTGAAGGGGAGTG
TGGTGGCTGGCCCGGCAGGAAGTCTCCTGTTCGGGCGACCGTCGACCGTG
TTCGATTATTTCTCGAGTGACGTGTTGTTGGGCTCGGGGGGGGGAGGGGG
CGAGGGAGGGGAGGGAGGGAGGAGACGGGGTAAGGCATTGCACCTGGTAC
CGTTGCTGGCCGTTTTTTTGCTGATTGTCGTCAAGTTGTCTTTTTGGTAG

protein sequence of jgi.p|Nanoce1779_2|563050

>mRNA_46-protein ID=mRNA_46-protein|Name=jgi.p|Nanoce1779_2|563050|organism=Nannochloropsis oceanica|type=polypeptide|length=450bp
MLLATVVSFSGEGAAAAGKAQQDLESAYPAVAAALLQGGGQPEPLARQKF
TVMVNTYKRHDMAKDAVRHYAACAKVDSIRVVWSENGTSPPSPTDEKDKG
WFSEHKPVFYDTYSTTSLNNRFVPPVGEDGKDNGLVTDAVFAVDDDIRVP
CTDLDFAFGVWKVADESLVGFMPRIHTMNPKALRAVAEAEGRKAKKKEER
RRRKKGDESREKIREGDGEAEEGVGRGGMEEEEEDILDVEAEEGGKEGGR
DGGGLRGGKIPPPLFRYNGWWKVWWEGEYSLVLTKAAFLHRSFLTAYTEL
MPGTIRAYVDENRNCEDIAMQFLATNMTGKPPIFVRGRLTDLGVFKGIST
KSWTQLGHMKSRGQCLNDFVDLYGGRMPLVKGSVVAGPAGSLLFGRPSTV
FDYFSSDVLLGSGGGGGEGGEGGRRRGKALHLVPLLAVFLLIVVKLSFW*

mRNA from alignment at scaffold_3:132116..133933+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_46 ID=mRNA_46|Name=jgi.p|Nanoce1779_2|563050|organism=Nannochloropsis oceanica|type=mRNA|length=1818bp|location=Sequence derived from alignment at scaffold_3:132116..133933+ (Nannochloropsis oceanica)
ATGCTCCTCGCCACCGTTGTGTCCTTCTCGGGAGAAGGCGCGGCGGCCGC
TGGGAAAGCCCAGCAAGATCTCGAATCTGCCTACCCTGCTGTTGCTGCTG
CTCTCTTGCAGGGCGGGGGGCAACCGGAGCCGTTGGCTCGACAGAAGTTC
ACGGTGATGGTGAACACTTACAAGAGGCACGACATGGCCAAAGACGCTGT
CCGGCACTATGCCGCGTGTGCCAAGGTAACTCCCTCCCTCCCTCCCCCCC
GCCCTCCCTCGTCGCCTCCTCTTGCATTTTGGGTTCCTCAGTCTCGCCCG
ACCCCCCTCTTTCTCATCGTACTCCTTCCTTCCTTCCCGCCCTCCCTCCC
TCCCTCCCACCCTCCTCATGTTCAGGTTGACTCCATCCGCGTCGTTTGGT
CGGAGAACGGGACTTCTCCTCCTTCCCCCACTGACGAGAAAGACAAGGGA
TGGTTCAGTGAGCACAAGCCCGTTTTCTACGACACCTACTCAACGACCAG
TTTGAATAACCGTTTCGTCCCGCCCGTCGGCGAGGACGGGAAGGATAACG
GTAAGTGCCCTTCCCCTTCTCTCCCTCTCTTCCTCCCCCCTTCCCTCCTC
TCCTCCTCGGCCTGATACAAGACCCTCAATTCCCTCCTTCCCTCCTTCCC
ATCTTCCCTCCTTCCCGTCAACGCACTTTGTTCCTTTCTCTAGGCTTGGT
TACTGACGCCGTGTTCGCCGTGGACGATGACATCCGGGTCCCATGCACCG
ACTTGGATTTTGCCTTTGGTGTGTGGAAGGTGGCGGATGAGTCGCTGGTG
GGATTCATGCCGCGCATCCATACGATGAACCCCAAGGCATTGAGGGCTGT
GGCGGAGGCGGAAGGGCGCAAGGCCAAGAAGAAGGAGGAGAGACGGCGGA
GGAAGAAGGGGGATGAAAGCAGGGAGAAAATAAGAGAGGGGGATGGGGAG
GCGGAGGAGGGAGTTGGCAGGGGGGGAATGGAGGAAGAGGAGGAAGACAT
TTTGGACGTGGAGGCGGAAGAGGGAGGGAAGGAGGGAGGGAGGGATGGGG
GAGGGCTGAGGGGGGGGAAGATCCCTCCGCCCTTGTTTCGCTACAACGGG
TGGTGGAAGGTGTGGTGGGAGGGTGAATACTCTCTTGTATTGACCAAGGC
AGCTTTCTTGCACCGCTCTTTTTTAACGGCCTACACGGAACTGATGCCGG
GGACGATTCGGGCGTATGTGGACGAGAACCGGAATTGTGAGGACATTGCC
ATGCAGTTCCTCGCCACCAACATGACAGGAAAGCCGCCCATTTTTGTGAG
GGGGCGGTTAACGGACTTGGGGGTGTTTAAAGGTACGTTTTTTTGTTGTT
TTTGGGTACATTCTGTTTTCTTATTTGAAATTTGTCGATGTATGTTTGTA
TCTATTCTTCAATTCCTTGTTGCGTGATGTGAGTAATGGTTGGGCACGGT
CACTCATCCCTCCCCCCTTCCAACCCTTCCTTCCTTCCTCCCTCCCTCGT
TGCGCAGGTATCTCAACCAAAAGCTGGACGCAACTCGGGCACATGAAAAG
CCGCGGACAGTGCCTCAACGACTTTGTGGATCTGTACGGGGGAAGAATGC
CCCTGGTGAAGGGGAGTGTGGTGGCTGGCCCGGCAGGAAGTCTCCTGTTC
GGGCGACCGTCGACCGTGTTCGATTATTTCTCGAGTGACGTGTTGTTGGG
CTCGGGGGGGGGAGGGGGCGAGGGAGGGGAGGGAGGGAGGAGACGGGGTA
AGGCATTGCACCTGGTACCGTTGCTGGCCGTTTTTTTGCTGATTGTCGTC
AAGTTGTCTTTTTGGTAG

Coding sequence (CDS) from alignment at scaffold_3:132116..133933+

>mRNA_46 ID=mRNA_46|Name=jgi.p|Nanoce1779_2|563050|organism=Nannochloropsis oceanica|type=CDS|length=5400bp|location=Sequence derived from alignment at scaffold_3:132116..133933+ (Nannochloropsis oceanica)
ATGCTCCTCGCCACCGTTGTGTCCTTCTCGGGAGAAGGCGCGGCGGCCGC
TGGGAAAGCCCAGCAAGATCTCGAATCTGCCTACCCTGCTGTTGCTGCTG
CTCTCTTGCAGGGCGGGGGGCAACCGGAGCCGTTGGCTCGACAGAAGTTC
ACGGTGATGGTGAACACTTACAAGAGGCACGACATGGCCAAAGACGCTGT
CCGGCACTATGCCGCGTGTGCCAAGGTTGACTCCATCCGCGTCGTTTGGT
CGGAGAACGGGACTTCTCCTCCTTCCCCCACTGACGAGAAAGACAAGGGA
TGGTTCAGTGAGCACAAGCCCGTTTTCTACGACACCTACTCAACGACCAG
TTTGAATAACCGTTTCGTCCCGCCCGTCGGCGAGGACGGGAAGGATAACG
GCTTGGTTACTGACGCCGTGTTCGCCGTGGACGATGACATCCGGGTCCCA
TGCACCGACTTGGATTTTGCCTTTGGTGTGTGGAAGGTGGCGGATGAGTC
GCTGGTGGGATTCATGCCGCGCATCCATACGATGAACCCCAAGGCATTGA
GGGCTGTGGCGGAGGCGGAAGGGCGCAAGGCCAAGAAGAAGGAGGAGAGA
CGGCGGAGGAAGAAGGGGGATGAAAGCAGGGAGAAAATAAGAGAGGGGGA
TGGGGAGGCGGAGGAGGGAGTTGGCAGGGGGGGAATGGAGGAAGAGGAGG
AAGACATTTTGGACGTGGAGGCGGAAGAGGGAGGGAAGGAGGGAGGGAGG
GATGGGGGAGGGCTGAGGGGGGGGAAGATCCCTCCGCCCTTGTTTCGCTA
CAACGGGTGGTGGAAGGTGTGGTGGGAGGGTGAATACTCTCTTGTATTGA
CCAAGGCAGCTTTCTTGCACCGCTCTTTTTTAACGGCCTACACGGAACTG
ATGCCGGGGACGATTCGGGCGTATGTGGACGAGAACCGGAATTGTGAGGA
CATTGCCATGCAGTTCCTCGCCACCAACATGACAGGAAAGCCGCCCATTT
TTGTGAGGGGGCGGTTAACGGACTTGGGGGTGTTTAAAGGTATCTCAACC
AAAAGCTGGACGCAACTCGGGCACATGAAAAGCCGCGGACAGTGCCTCAA
CGACTTTGTGGATCTGTACGGGGGAAGAATGCCCCTGGTGAAGGGGAGTG
TGGTGGCTGGCCCGGCAGGAAGTCTCCTGTTCGGGCGACCGTCGACCGTG
TTCGATTATTTCTCGAGTGACGTGTTGTTGGGCTCGGGGGGGGGAGGGGG
CGAGGGAGGGGAGGGAGGGAGGAGACGGGGTAAGGCATTGCACCTGGTAC
CGTTGCTGGCCGTTTTTTTGCTGATTGTCGTCAAGTTGTCTTTTTGGTAG
ATGCTCCTCGCCACCGTTGTGTCCTTCTCGGGAGAAGGCGCGGCGGCCGC
TGGGAAAGCCCAGCAAGATCTCGAATCTGCCTACCCTGCTGTTGCTGCTG
CTCTCTTGCAGGGCGGGGGGCAACCGGAGCCGTTGGCTCGACAGAAGTTC
ACGGTGATGGTGAACACTTACAAGAGGCACGACATGGCCAAAGACGCTGT
CCGGCACTATGCCGCGTGTGCCAAGGTTGACTCCATCCGCGTCGTTTGGT
CGGAGAACGGGACTTCTCCTCCTTCCCCCACTGACGAGAAAGACAAGGGA
TGGTTCAGTGAGCACAAGCCCGTTTTCTACGACACCTACTCAACGACCAG
TTTGAATAACCGTTTCGTCCCGCCCGTCGGCGAGGACGGGAAGGATAACG
GCTTGGTTACTGACGCCGTGTTCGCCGTGGACGATGACATCCGGGTCCCA
TGCACCGACTTGGATTTTGCCTTTGGTGTGTGGAAGGTGGCGGATGAGTC
GCTGGTGGGATTCATGCCGCGCATCCATACGATGAACCCCAAGGCATTGA
GGGCTGTGGCGGAGGCGGAAGGGCGCAAGGCCAAGAAGAAGGAGGAGAGA
CGGCGGAGGAAGAAGGGGGATGAAAGCAGGGAGAAAATAAGAGAGGGGGA
TGGGGAGGCGGAGGAGGGAGTTGGCAGGGGGGGAATGGAGGAAGAGGAGG
AAGACATTTTGGACGTGGAGGCGGAAGAGGGAGGGAAGGAGGGAGGGAGG
GATGGGGGAGGGCTGAGGGGGGGGAAGATCCCTCCGCCCTTGTTTCGCTA
CAACGGGTGGTGGAAGGTGTGGTGGGAGGGTGAATACTCTCTTGTATTGA
CCAAGGCAGCTTTCTTGCACCGCTCTTTTTTAACGGCCTACACGGAACTG
ATGCCGGGGACGATTCGGGCGTATGTGGACGAGAACCGGAATTGTGAGGA
CATTGCCATGCAGTTCCTCGCCACCAACATGACAGGAAAGCCGCCCATTT
TTGTGAGGGGGCGGTTAACGGACTTGGGGGTGTTTAAAGGTATCTCAACC
AAAAGCTGGACGCAACTCGGGCACATGAAAAGCCGCGGACAGTGCCTCAA
CGACTTTGTGGATCTGTACGGGGGAAGAATGCCCCTGGTGAAGGGGAGTG
TGGTGGCTGGCCCGGCAGGAAGTCTCCTGTTCGGGCGACCGTCGACCGTG
TTCGATTATTTCTCGAGTGACGTGTTGTTGGGCTCGGGGGGGGGAGGGGG
CGAGGGAGGGGAGGGAGGGAGGAGACGGGGTAAGGCATTGCACCTGGTAC
CGTTGCTGGCCGTTTTTTTGCTGATTGTCGTCAAGTTGTCTTTTTGGTAG
ATGCTCCTCGCCACCGTTGTGTCCTTCTCGGGAGAAGGCGCGGCGGCCGC
TGGGAAAGCCCAGCAAGATCTCGAATCTGCCTACCCTGCTGTTGCTGCTG
CTCTCTTGCAGGGCGGGGGGCAACCGGAGCCGTTGGCTCGACAGAAGTTC
ACGGTGATGGTGAACACTTACAAGAGGCACGACATGGCCAAAGACGCTGT
CCGGCACTATGCCGCGTGTGCCAAGGTTGACTCCATCCGCGTCGTTTGGT
CGGAGAACGGGACTTCTCCTCCTTCCCCCACTGACGAGAAAGACAAGGGA
TGGTTCAGTGAGCACAAGCCCGTTTTCTACGACACCTACTCAACGACCAG
TTTGAATAACCGTTTCGTCCCGCCCGTCGGCGAGGACGGGAAGGATAACG
GCTTGGTTACTGACGCCGTGTTCGCCGTGGACGATGACATCCGGGTCCCA
TGCACCGACTTGGATTTTGCCTTTGGTGTGTGGAAGGTGGCGGATGAGTC
GCTGGTGGGATTCATGCCGCGCATCCATACGATGAACCCCAAGGCATTGA
GGGCTGTGGCGGAGGCGGAAGGGCGCAAGGCCAAGAAGAAGGAGGAGAGA
CGGCGGAGGAAGAAGGGGGATGAAAGCAGGGAGAAAATAAGAGAGGGGGA
TGGGGAGGCGGAGGAGGGAGTTGGCAGGGGGGGAATGGAGGAAGAGGAGG
AAGACATTTTGGACGTGGAGGCGGAAGAGGGAGGGAAGGAGGGAGGGAGG
GATGGGGGAGGGCTGAGGGGGGGGAAGATCCCTCCGCCCTTGTTTCGCTA
CAACGGGTGGTGGAAGGTGTGGTGGGAGGGTGAATACTCTCTTGTATTGA
CCAAGGCAGCTTTCTTGCACCGCTCTTTTTTAACGGCCTACACGGAACTG
ATGCCGGGGACGATTCGGGCGTATGTGGACGAGAACCGGAATTGTGAGGA
CATTGCCATGCAGTTCCTCGCCACCAACATGACAGGAAAGCCGCCCATTT
TTGTGAGGGGGCGGTTAACGGACTTGGGGGTGTTTAAAGGTATCTCAACC
AAAAGCTGGACGCAACTCGGGCACATGAAAAGCCGCGGACAGTGCCTCAA
CGACTTTGTGGATCTGTACGGGGGAAGAATGCCCCTGGTGAAGGGGAGTG
TGGTGGCTGGCCCGGCAGGAAGTCTCCTGTTCGGGCGACCGTCGACCGTG
TTCGATTATTTCTCGAGTGACGTGTTGTTGGGCTCGGGGGGGGGAGGGGG
CGAGGGAGGGGAGGGAGGGAGGAGACGGGGTAAGGCATTGCACCTGGTAC
CGTTGCTGGCCGTTTTTTTGCTGATTGTCGTCAAGTTGTCTTTTTGGTAG
ATGCTCCTCGCCACCGTTGTGTCCTTCTCGGGAGAAGGCGCGGCGGCCGC
TGGGAAAGCCCAGCAAGATCTCGAATCTGCCTACCCTGCTGTTGCTGCTG
CTCTCTTGCAGGGCGGGGGGCAACCGGAGCCGTTGGCTCGACAGAAGTTC
ACGGTGATGGTGAACACTTACAAGAGGCACGACATGGCCAAAGACGCTGT
CCGGCACTATGCCGCGTGTGCCAAGGTTGACTCCATCCGCGTCGTTTGGT
CGGAGAACGGGACTTCTCCTCCTTCCCCCACTGACGAGAAAGACAAGGGA
TGGTTCAGTGAGCACAAGCCCGTTTTCTACGACACCTACTCAACGACCAG
TTTGAATAACCGTTTCGTCCCGCCCGTCGGCGAGGACGGGAAGGATAACG
GCTTGGTTACTGACGCCGTGTTCGCCGTGGACGATGACATCCGGGTCCCA
TGCACCGACTTGGATTTTGCCTTTGGTGTGTGGAAGGTGGCGGATGAGTC
GCTGGTGGGATTCATGCCGCGCATCCATACGATGAACCCCAAGGCATTGA
GGGCTGTGGCGGAGGCGGAAGGGCGCAAGGCCAAGAAGAAGGAGGAGAGA
CGGCGGAGGAAGAAGGGGGATGAAAGCAGGGAGAAAATAAGAGAGGGGGA
TGGGGAGGCGGAGGAGGGAGTTGGCAGGGGGGGAATGGAGGAAGAGGAGG
AAGACATTTTGGACGTGGAGGCGGAAGAGGGAGGGAAGGAGGGAGGGAGG
GATGGGGGAGGGCTGAGGGGGGGGAAGATCCCTCCGCCCTTGTTTCGCTA
CAACGGGTGGTGGAAGGTGTGGTGGGAGGGTGAATACTCTCTTGTATTGA
CCAAGGCAGCTTTCTTGCACCGCTCTTTTTTAACGGCCTACACGGAACTG
ATGCCGGGGACGATTCGGGCGTATGTGGACGAGAACCGGAATTGTGAGGA
CATTGCCATGCAGTTCCTCGCCACCAACATGACAGGAAAGCCGCCCATTT
TTGTGAGGGGGCGGTTAACGGACTTGGGGGTGTTTAAAGGTATCTCAACC
AAAAGCTGGACGCAACTCGGGCACATGAAAAGCCGCGGACAGTGCCTCAA
CGACTTTGTGGATCTGTACGGGGGAAGAATGCCCCTGGTGAAGGGGAGTG
TGGTGGCTGGCCCGGCAGGAAGTCTCCTGTTCGGGCGACCGTCGACCGTG
TTCGATTATTTCTCGAGTGACGTGTTGTTGGGCTCGGGGGGGGGAGGGGG
CGAGGGAGGGGAGGGAGGGAGGAGACGGGGTAAGGCATTGCACCTGGTAC
CGTTGCTGGCCGTTTTTTTGCTGATTGTCGTCAAGTTGTCTTTTTGGTAG

Synonyms

Publications